Genome Research and Molecular Bio Medicine

2016

Macronutrient composition determines accumulation of persistent organic pollutants from dietary exposure in adipose tissue of mice

Myrmel, L. S., Fjære, E., Midtbø, L. K., Bernhard, A., Petersen, R. K., Sonne, S. B., Mortensen, A., Hao, Q., Brattelid, T., Liaset, B., Kristiansen, K. & Madsen, L., 2016, In: Journal of Nutritional Biochemistry. 27, p. 307-316 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

12 Citations (Scopus)

Marine fatty acids aggravate hepatotoxicity of α-HBCD in juvenile female BALB/c mice

Bernhard, A., Berntssen, M. H. G., Lundebye, A-K., Alvheim, A. R., Myrmel, L. S., Fjære, E., Torstensen, B. E., Kristiansen, K., Madsen, L., Brattelid, T. & Rasinger, J. D., 1 Nov 2016, In: Food and Chemical Toxicology. 97, p. 411-423 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

8 Citations (Scopus)

MDM2 facilitates adipocyte differentiation through CRTC-mediated activation of STAT3

Hallenborg, P., Siersbæk, M., Barrio-Hernandez, I., Nielsen, R., Kristiansen, K., Mandrup, S., Grøntved, L. & Blagoev, B., 2016, In: Cell Death & Disease. 7, 12 p., e2289.

Research output: Contribution to journal › Journal article › Research › peer-review

13 Citations (Scopus)

71 Downloads (Pure)

No effect of anti-inflammatory medication on postprandial and postexercise muscle protein synthesis in elderly men with slightly elevated systemic inflammation

Dideriksen, K. J., Reitelseder, S., Malmgaard-Clausen, N. M., Bechshøft, R., Petersen, R. K., Mikkelsen, U. R. & Holm, L., 1 Oct 2016, In: Experimental Gerontology. 83, p. 120-129 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Novel loci and pathways significantly associated with longevity

Zeng, Y., Nie, C., Min, J., Liu, X., Li, M., Chen, H., Xu, H., Wang, M., Ni, T., Li, Y., Yan, H., Zhang, J-P., Song, C., Chi, L-Q., Wang, H-M., Dong, J., Zheng, G-Y., Lin, L., Qian, F., Qi, Y., & 37 othersLiu, X., Cao, H., Wang, Y., Zhang, L., Li, Z., Zhou, Y., Wang, Y., Lu, J., Li, J., Qi, M., Bolund, L., Yashin, A., Land, K. C., Gregory, S., Yang, Z., Gottschalk, W., Tao, W., Wang, J., Wang, J., Xu, X., Bae, H., Nygaard, M., Christiansen, L., Christensen, K., Franceschi, C., Lutz, M. W., Gu, J., Tan, Q., Perls, T., Sebastiani, P., Deelen, J., Slagboom, E., Hauser, E., Xu, H., Tian, X-L., Yang, H. & Vaupel, J. W., 25 Feb 2016, In: Scientific Reports. 6, 13 p., 21243 .

Research output: Contribution to journal › Journal article › Research › peer-review

75 Citations (Scopus)

73 Downloads (Pure)

Novel Y-chromosomal microdeletions associated with non-obstructive azoospermia uncovered by high throughput sequencing of sequence-tagged sites (STSs)

Liu, X., Li, Z., Su, Z., Zhang, J., Li, H., Xie, J., Xu, H., Jiang, T., Luo, L., Zhang, R., Zeng, X., Xu, H., Huang, Y., Mou, L., Hu, J., Qian, W., Zeng, Y., Zhang, X., Xiong, C., Yang, H., & 4 othersKristiansen, K., Cai, Z., Wang, J. & Gui, Y., 24 Feb 2016, In: Scientific Reports. 6, 12 p., 21831 .

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

64 Downloads (Pure)

p53 regulates expression of uncoupling protein 1 through binding and repression of PPARγ coactivator-1α

Hallenborg, P., Fjære, E., Liaset, B., Petersen, R. K., Murano, I., Sonne, S. B., Falkerslev, M., Winther, S., Jensen, B. A. H., Ma, T., Hansen, J. B., Cinti, S., Blagoev, B., Madsen, L. & Kristiansen, K., 15 Jan 2016, In: American Journal of Physiology: Endocrinology and Metabolism. 310, 2, p. E116-128 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

19 Citations (Scopus)

POPDC1^S201F causes muscular dystrophy and arrhythmia by affecting protein trafficking

Schindler, R. F. R., Scotton, C., Zhang, J., Passarelli, C., Ortiz-Bonnin, B., Simrick, S., Schwerte, T., Poon, K-L., Fang, M., Rinne, S., Froese, A., Nikolaev, V. O., Grunert, C., Mueller, T., Tasca, G., Sarathchandra, P., Drago, F., Dallapiccola, B., Rapezzi, C., Arbustini, E., & 14 othersDi Raimo, F. R., Neri, M., Selvatici, R., Gualandi, F., Fattori, F., Pietrangelo, A., Li, W., Jiang, H., Xu, X., Bertini, E., Becher, N., Wang, J., Brand, T. & Ferlini, A., 4 Jan 2016, In: Journal of Clinical Investigation. 126, 1, p. 239-253 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

43 Citations (Scopus)

Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota

Palleja, A., Kashani, A., Allin, K. H., Nielsen, T., Zhang, C., Li, Y., Brach, T., Liang, S., Feng, Q., Jørgensen, N. B., Bojsen-Møller, K. N., Dirksen, C., Burgdorf, K. S., Holst, J. J., Madsbad, S., Wang, J., Pedersen, O. B., Hansen, T. & Arumugam, M., 15 Jun 2016, In: Genome Medicine. 8, 13 p., 67.

Research output: Contribution to journal › Journal article › Research › peer-review

137 Citations (Scopus)

196 Downloads (Pure)

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

Shen, Y., Stracquadanio, G., Wang, Y., Yang, K., Mitchell, L. A., Xue, Y., Cai, Y., Chen, T., Dymond, J. S., Kang, K., Gong, J., Zeng, X., Zhang, Y., Li, Y., Feng, Q., Xu, X., Wang, J., Wang, J., Yang, H., Boeke, J. D., & 1 othersBader, J. S., Jan 2016, In: Genome Research. 26, 1, p. 36-49 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

72 Citations (Scopus)

71 Downloads (Pure)

Shotgun metagenomics of 250 adult twins reveals genetic and environmental impacts on the gut microbiome

Xie, H., Guo, R., Zhong, H., Feng, Q., Lan, Z., Qin, B., Ward, K. J., Jackson, M. A., Xia, Y., Chen, X., Chen, B., Xia, H., Xu, C., Li, F., Xu, X., Al-Aama, J. Y., Yang, H., Wang, J., Kristiansen, K., Wang, J., & 5 othersSteves, C. J., Bell, J. T., Li, J., Spector, T. D. & Jia, H., 2016, In: Cell Systems. 3, 6, p. 572-584.e3 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

111 Citations (Scopus)

Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis

Qiu, S., Li, W., Xiong, H., Liu, D., Bai, Y., Wu, K., Zhang, X., Yang, H., Ma, K., Hou, Y. & Li, B., 29 Sept 2016, In: BMC Genomics. 17, 11 p., 766.

Research output: Contribution to journal › Journal article › Research › peer-review

16 Citations (Scopus)

70 Downloads (Pure)

Systematic comparative evaluation of methods for investigating the TCRβ repertoire

Liu, X., Zhang, W., Zeng, X., Zhang, R., Du, Y., Hong, X., Cao, H., Su, Z., Wang, C., Wu, J., Nie, C., Xu, X. & Kristiansen, K., 2016, In: P L o S One. 11, 3, 18 p., e0152464.

Research output: Contribution to journal › Journal article › Research › peer-review

22 Citations (Scopus)

77 Downloads (Pure)

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts

Bian, C., Hu, Y., Ravi, V., Kuznetsova, I. S., Shen, X., Mu, X., Sun, Y., You, X., Li, J., Li, X., Qiu, Y., Tay, B. H., Thevasagayam, N. M., Komissarov, A. S., Trifonov, V., Kabilov, M., Tupikin, A., Luo, J., Liu, Y., Song, H., & 32 othersLiu, C., Wang, X., Gu, D., Yang, Y., Li, W., Polgar, G., Fan, G., Zeng, P., Zhang, H., Xiong, Z., Tang, Z., Peng, C., Ruan, Z., Yu, H., Chen, J., Fan, M., Huang, Y., Wang, M., Zhao, X., Hu, G., Yang, H., Wang, J., Wang, J., Xu, X., Song, L., Xu, G., Xu, P., Xu, J., O'Brien, S. J., Orbán, L., Venkatesh, B. & Shi, Q., 2016, In: Scientific Reports. 6, 17 p., 24501.

Research output: Contribution to journal › Journal article › Research › peer-review

44 Citations (Scopus)

600 Downloads (Pure)

The elusive endogenous adipogenic PPARγ agonists: lining up the suspects

Hallenborg, P., Petersen, R. K., Kouskoumvekaki, I., Newman, J. W., Madsen, L. & Kristiansen, K., 1 Jan 2016, In: Progress in Lipid Research. 61, p. 149-162 14 p.

Research output: Contribution to journal › Review › peer-review

29 Citations (Scopus)

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

Lagkouvardos, I., Pukall, R., Abt, B., Foesel, B. U., Meier-Kolthoff, J. P., Kumar, N., Bresciani, A., Martínez, I., Just, S., Ziegler, C., Brugiroux, S., Garzetti, D., Wenning, M., Bui, T. P. N., Wang, J., Hugenholtz, F., Plugge, C. M., Peterson, D. A., Hornef, M. W., Baines, J. F., & 8 othersSmidt, H., Walter, J., Kristiansen, K., Nielsen, H. B., Haller, D., Overmann, J., Stecher, B. & Clavel, T., 8 Aug 2016, In: Nature Microbiology. 1, 15 p., 16131.

Research output: Contribution to journal › Journal article › Research › peer-review

160 Citations (Scopus)

134 Downloads (Pure)

The protein source determines the potential of high protein diets to attenuate obesity development in C57BL/6J mice

Aune, U. L., Myrmel, L. S., Fjære, E., Rønnevik, A. K., Bjelland, S., Fauske, K. R., Holm, J. B., Basse, A. L., Hansen, J. B., Liaset, B., Kristiansen, K. & Madsen, L., 2 Apr 2016, In: Adipocytes. 5, 2, p. 196-211 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

25 Citations (Scopus)

The Role of Seafood Nutrients and Persistent Organic Pollutants in the Development of Metabolic Diseases

Bernhard, A., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 250 p.

Research output: Book/Report › Ph.D. thesis

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Yang, J., Chen, X., Bai, J., Fang, D., Qiu, Y., Jiang, W., Yuan, H., Bian, C., Lu, J., He, S., Pan, X., Zhang, Y., Wang, X., You, X., Wang, Y., Sun, Y., Mao, D., Liu, Y., Fan, G., Zhang, H., & 21 othersChen, X., Zhang, X., Zheng, L., Wang, J., Cheng, L., Chen, J., Ruan, Z., Li, J., Yu, H., Peng, C., Ma, X., Xu, J., He, Y., Xu, Z., Xu, P., Wang, J., Yang, H., Wang, J., Whitten, T., Xu, X. & Shi, Q., 4 Jan 2016, In: B M C Biology. 14, 13 p., 1.

Research output: Contribution to journal › Journal article › Research › peer-review

76 Citations (Scopus)

160 Downloads (Pure)

Understanding Cancer Genome and Its Evolution by Next Generation Sequencing

Hou, Y., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 144 p.

Research output: Book/Report › Ph.D. thesis

2015

A catalog of the mouse gut metagenome

Xiao, L., Feng, Q., Liang, S., Sonne, S. B., Xia, Z., Qiu, X., Li, X., Long, H., Zhang, J., Zhang, D., Liu, C., Fang, Z., Chou, J., Glanville, J., Hao, Q., Kotowska, D. E., Colding, C. S., Licht, T. R., Wu, D., Yu, J., & 17 othersSung, J. J. Y., Liang, Q., Li, J., Jia, H., Lan, Z., Tremaroli, V., Dworzynski, P., Nielsen, H. B., Bäckhed, G. F., Dore, J., Le Chatelier, E., Ehrlich, S. D., Lin, J. C., Arumugam, M., Wang, J., Madsen, L. & Kristiansen, K., 1 Oct 2015, In: Nature Biotechnology. 33, 10, p. 1103-1108 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

210 Citations (Scopus)

A comparison of isolated circulating tumor cells and tissue biopsies using whole-genome sequencing in prostate cancer

Jiang, R., Lu, Y-T., Ho, H., Li, B., Chen, J-F., Lin, M., Li, F., Wu, K., Wu, H., Lichterman, J., Wan, H., Lu, C-L., OuYang, W., Ni, M., Wang, L., Li, G., Lee, T., Zhang, X., Yang, J., Rettig, M., & 9 othersChung, L. W. K., Yang, H., Li, K-C., Hou, Y., Tseng, H-R., Hou, S., Xu, X., Wang, J. & Posadas, E. M., 2015, In: OncoTarget. 6, 42, p. 44781-44793 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

72 Citations (Scopus)

Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways

Hansen, S. N., Westergaard, D., Thomsen, M. B. H., Vistesen, M. V., Do, K. N., Fogh, L., Belling, K. G., Wang, J., Yang, H., Gupta, R., Ditzel, H. J., Moreira, J., Brünner, N., Stenvang, J. & Rasmussen, A-S. S., 11 Jun 2015, In: Tumor Biology. 36, 6, p. 4327-4338 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

25 Citations (Scopus)

Activity of dietary fatty acids on FFA1 and FFA4 and characterisation of pinolenic acid as a dual FFA1/FFA4 agonist with potential effect against metabolic diseases

Christiansen, E., Watterson, K. R., Stocker, C. J., Sokol, E., Jenkins, L., Simon, K., Grundmann, M., Petersen, R. K., Wargent, E. T., Hudson, B. D., Kostenis, E., Ejsing, C. S., Cawthorne, M. A., Milligan, G. & Ulven, T., 14 Jun 2015, In: British Journal of Nutrition. 113, 11, p. 1677-1688 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

56 Citations (Scopus)

Advantage of whole exome sequencing over allele-specific and targeted segment sequencing in detection of novel TULP1 mutation in leber congenital amaurosis

Guo, Y., Prokudin, I., Yu, C., Liang, J., Xie, Y., Flaherty, M., Tian, L., Crofts, S., Wang, F., Snyder, J., Donaldson, C., Abdel-Magid, N., Vazquez, L., Keating, B., Hakonarson, H., Wang, J. & Jamieson, R. V., 2015, In: Ophthalmic Genetics. 36, 4, p. 333-338 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

A global reference for human genetic variation

Wang, J., Feng, Q., Fang, X., Guo, X., Jian, M., Jiang, H., Liu, X., Fang, L., Cao, H. & Jespersen, J. B., 30 Sept 2015, In: Nature. 526, 7571, p. 68-74 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

5791 Citations (Scopus)

280 Downloads (Pure)

Aniline is rapidly converted into Paracetamol impairing male reproductive development

Holm, J. B., Chalmey, C., Modick, H., Jensen, L. S., Dierkes, G., Weiss, T., Jensen, B. A. H., Nørregard, M. M., Borkowski, K., Styrishave, B., Koch, H. M., Mazaud-Guittot, S., Jegou, B., Kristiansen, K. & Kristensen, D. M., Nov 2015, In: Toxicological Sciences. 148, 1, p. 288-298 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

30 Citations (Scopus)

Characterization of 26 deletion CNVs reveals the frequent occurrence of micro-mutations within the breakpoint-flanking regions and frequent repair of double-strand breaks by templated insertions derived from remote genomic regions

Wang, Y., Su, P., Hu, B., Zhu, W., Li, Q., Yuan, P., Li, J., Guan, X., Li, F., Jing, X., Li, R., Zhang, Y., Ferec, C., Cooper, D. N., Wang, J., Huang, D., Chen, J-M. & Wang, Y., 1 Jun 2015, In: Human Genetics. 134, 6, p. 589-603 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

19 Citations (Scopus)

Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of lactobacilli

Holm, J. B., Sorobetea, D., Kiilerich, P., Ramayo-Caldas, Y., Estellé, J., Ma, T., Madsen, L., Kristiansen, K. & Svensson-Frej, M., 5 May 2015, In: PLOS ONE. 10, 5, 22 p., e0125495.

Research output: Contribution to journal › Journal article › Research › peer-review

98 Citations (Scopus)

87 Downloads (Pure)

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

Zhang, W., Yu, Y., Hertwig, F., Thierry-Mieg, J., Zhang, W., Thierry-Mieg, D., Wang, J., Furlanello, C., Devanarayan, V., Cheng, J., Deng, Y., Hero, B., Hong, H., Jia, M., Li, L., Lin, S. M., Nikolsky, Y., Oberthuer, A., Qing, T., Su, Z., & 56 othersVolland, R., Wang, C., Wang, M. D., Ai, J., Albanese, D., Asgharzadeh, S., Avigad, S., Bao, W., Bessarabova, M., Brilliant, M. H., Brors, B., Chierici, M., Chu, T-M., Zhang, J., Grundy, R. G., He, M. M., Hebbring, S., Kaufman, H. L., Lababidi, S., Lancashire, L. J., Li, Y., Lu, X. X., Luo, H., Ma, X., Ning, B., Noguera, R., Peifer, M., Phan, J. H., Roels, F., Rosswog, C., Shao, S., Shen, J., Theissen, J., Tonini, G. P., Vandesompele, J., Wu, P-Y., Xiao, W., Xu, J., Xu, W., Xuan, J., Yang, Y., Ye, Z., Dong, Z., Zhang, K. K., Yin, Y., Zhao, C., Zheng, Y., Wolfinger, R. D., Shi, T., Malkas, L. H., Berthold, F., Wang, J., Tong, W., Shi, L., Peng, Z. & Fischer, M., 25 Jun 2015, In: Genome Biology (Online Edition). 16, 12 p., 133.

Research output: Contribution to journal › Journal article › Research › peer-review

170 Citations (Scopus)

231 Downloads (Pure)

Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

Hou, Y., Wu, K., Shi, X., Li, F., Song, L., Wu, H., Dean, M., Li, G., Tsang, S., Jiang, R., Zhang, X., Li, B., Liu, G., Bedekar, N., Lu, N., Xie, G., Liang, H., Chang, L., Wang, T., Chen, J., & 6 othersLi, Y., Zhang, X., Yang, H., Xu, X., Wang, L. & Wang, J., 2015, In: GigaScience. 4, 16 p., 37.

Research output: Contribution to journal › Journal article › Research › peer-review

81 Citations (Scopus)

303 Downloads (Pure)

Contaminant levels in Norwegian farmed Atlantic salmon (Salmo salar) in the 13-year period from 1999 to 2011

Nøstbakken, O. J., Hove, H. T., Duinker, A., Lundebye, A-K., Berntssen, M. H. G., Hannisdal, R., Lunestad, B. T., Maage, A., Madsen, L., Torstensen, B. E. & Julshamn, K., 1 Jan 2015, In: Environment International. 74, p. 274-280 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

39 Citations (Scopus)

92 Downloads (Pure)

De novo assembly of a haplotype-resolved human genome

Cao, H., Wu, H., Luo, R., Huang, S., Sun, Y., Tong, X., Xie, Y., Liu, B., Yang, H., Zheng, H., Li, J., Li, B., Wang, Y., Yang, F., Sun, P., Liu, S., Gao, P., Huang, H., Sun, J., Chen, D., & 21 othersHe, G., Huang, W., Huang, Z., Li, Y., Tellier, L. C. A. M., Liu, X., Feng, Q., Xu, X., Zhang, X., Bolund, L., Krogh, A., Kristiansen, K., Drmanac, R., Drmanac, S., Nielsen, R., Li, S., Wang, J., Yang, H., Li, Y., Wong, G. K-S. & Wang, J., 11 Jun 2015, In: Nature Biotechnology. 33, 6, p. 617-626 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

41 Citations (Scopus)

Dietary n-6 PUFA, carbohydrate: protein ratio and change in body weight and waist circumference: a follow-up study

Jakobsen, M. U., Madsen, L., Dethlefsen, C., Due, K. M., Halkjaer, J., Sørensen, T. I. A., Kristiansen, K. & Overvad, K., 10 Feb 2015, In: Public Health Nutrition. 18, 07, p. 1317-1323 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

3 Citations (Scopus)

Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale

Danish Pan Genome Consortium, Belling, K. G. & Rasmussen, S., 2015, In: GigaScience. 4, 13 p., 64.

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

198 Downloads (Pure)

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Forslund, K., Hildebrand, F., Nielsen, T., Falony, G., Le Chatelier, E., Sunagawa, S., Prifti, E., Vieira-Silva, S., Gudmundsdottir, V., Pedersen, H. K., Arumugam, M., Kristiansen, K., Yvonne Voigt, A., Vestergaard, H., Hercog, R., Igor Costea, P., Roat Kultima, J., Li, J., Jørgensen, T., Levenez, F., & 9 othersDore, J., Nielsen, H. B., Brunak, S., Raes, J., Hansen, T., Wang, J., Dusko Ehrlich, S., Bork, P. & Pedersen, O. B., 10 Dec 2015, In: Nature. 528, 7581, p. 262-266 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

856 Citations (Scopus)

Dynamics and stabilization of the human gut microbiome during the first year of life

Bäckhed, G. F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., Khan, M. T., Zhang, J., Li, J., Xiao, L., Al-Aama, J., Zhang, D., Lee, Y. S., Kotowska, D. E., Colding, C. S., Tremaroli, V., & 7 othersYin, Y., Bergman, S., Xu, X., Madsen, L., Kristiansen, K., Dahlgren, J. & Wang, J., 13 May 2015, In: Cell Host & Microbe. 17, 5, p. 690-703 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

1060 Citations (Scopus)

Egg cortisol exposure enhances fearfulness in larvae and juvenile rainbow trout

Colson, V., Valotaire, C., Geffroy, B. & Kiilerich, P., 1 Dec 2015, In: Ethology. 121, 12, p. 1191-1201 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

19 Citations (Scopus)

Embryo genome profiling by single-cell sequencing for preimplantation genetic diagnosis in a β-thalassemia family

Xu, Y., Chen, S., Yin, X., Shen, X., Pan, X., Chen, F., Jiang, H., Liang, Y., Wang, W., Xu, X., Wang, J., Zhang, X., Zhou, C. & Wang, J., 1 Apr 2015, In: Clinical Chemistry. 61, 4, p. 617-626 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas

Wu, K., Zhang, X., Li, F., Xiao, D., Hou, Y., Zhu, S., Liu, D., Ye, X., Ye, M., Yang, J., Shao, L., Pan, H., Lu, N., Yu, Y., Liu, L., Li, J., Huang, L., Tang, H., Deng, Q., Zheng, Y., & 26 othersPeng, L., Liu, G., Gu, X., He, P., Gu, Y., Lin, W., He, H., Xie, G., Liang, H., An, N., Wang, H., Teixeira, M., Vieira, J., Liang, W., Zhao, X., Peng, Z., Mu, F., Zhang, X., Xu, X., Yang, H., Kristiansen, K., Zhong, N., Wang, J., Pan-Hammarström, Q., He, J. & Wang, J., 2015, In: Nature Communications. 6, 13 p., 10131.

Research output: Contribution to journal › Journal article › Research › peer-review

53 Citations (Scopus)

102 Downloads (Pure)

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells

Wu, L., Zhang, X., Zhao, Z., Wang, L., Li, B., Li, G., Dean, M., Yu, Q., Wang, Y., Lin, X., Rao, W., Mei, Z., Li, Y., Jiang, R., Yang, H., Li, F., Xie, G., Xu, L., Wu, K., Zhang, J., & 9 othersChen, J., Wang, T., Kristiansen, K., Zhang, X., Li, Y., Yang, H., Wang, J., Hou, Y. & Xu, X., 2015, In: GigaScience. 4, 17 p., 51.

Research output: Contribution to journal › Journal article › Research › peer-review

36 Citations (Scopus)

152 Downloads (Pure)

Genome of the Netherlands population-specific imputations identify an ABCA6 variant associated with cholesterol levels

Van Leeuwen, E. M., Karssen, L. C., Deelen, J., Isaacs, A., Medina-Gomez, C., Mbarek, H., Kanterakis, A., Trompet, S., Postmus, I., Verweij, N., Van Enckevort, D. J., Huffman, J. E., White, C. C., Feitosa, M. F., Bartz, T. M., Manichaikul, A., Joshi, P. K., Peloso, G. M., Deelen, P., Van Dijk, F., & 105 othersWillemsen, G., De Geus, E. J., Milaneschi, Y., Penninx, B. W. J. H., Francioli, L. C., Menelaou, A., Pulit, S. L., Rivadeneira, F., Hofman, A., Oostra, B. A., Franco, O. H., Leach, I. M., Beekman, M., De Craen, A. J. M., Uh, H. W., Trochet, H., Hocking, L. J., Porteous, D. J., Sattar, N., Packard, C. J., Buckley, B. M., Brody, J. A., Bis, J. C., Rotter, J. I., Mychaleckyj, J. C., Campbell, H., Duan, Q., Lange, L. A., Wilson, J. F., Hayward, C., Polasek, O., Vitart, V., Rudan, I., Wright, A. F., Rich, S. S., Psaty, B. M., Borecki, I. B., Kearney, P. M., Stott, D. J., Cupples, L. A., Jukema, J. W., Van Der Harst, P., Sijbrands, E. J., Hottenga, J. J., Uitterlinden, A. G., Swertz, M. A., Van Ommen, G. J. B., De Bakker, P. I. W., Eline Slagboom, P., Boomsma, D. I., Wijmenga, C., Van Duijn, C. M., Neerincx, P. B. T., Elbers, C. C., Palamara, P. F., Peer, I., Abdellaoui, A., Kloosterman, W. P., Van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Stoneking, M., De Knijff, P., Kayser, M., Veldink, J. H., Van Den Berg, L. H., Byelas, H., Den Dunnen, J. T., Dijkstra, M., Amin, N., Van Der Velde, K. J., Van Setten, J., Kattenberg, M., Van Schaik, B. D. C., Bot, J., Nijman, I. J., Mei, H., Koval, V., Ye, K., Lameijer, E. W., Moed, M. H., Hehir-Kwa, J. Y., Handsaker, R. E., Sunyaev, S. R., Sohail, M., Hormozdiari, F., Marschall, T., Schönhuth, A., Guryev, V., Suchiman, H. E. D., Wolffenbuttel, B. H., Platteel, M., Pitts, S. J., Potluri, S., Cox, D. R., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J. & Bovenberg, J. A., 2015, In: Nature Communications. 6, 6 p., 6065.

Research output: Contribution to journal › Journal article › Research › peer-review

24 Citations (Scopus)

58 Downloads (Pure)

Genome-wide identification of RNA editing in hepatocellular carcinoma

Kang, L., Liu, X., Gong, Z., Zheng, H., Wang, J., Li, Y., Yang, H., Hardwick, J., Dai, H., Poon, R. T. P., Lee, N. P., Mao, M., Peng, Z. & Chen, R., 1 Feb 2015, In: Genomics. 105, 2, p. 76-82 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Genomic legacy of the African cheetah, Acinonyx jubatus

Dobrynin, P., Liu, S., Tamazian, G., Xiong, Z., Yurchenko, A. A., Krasheninnikova, K., Kliver, S., Schmidt-Kuentzel, A., Koepfli, K-P., Johnson, W., Kuderna, L. F. K., Garcia-Perez, R., de Manuel, M., Godinez, R., Komissarov, A., Makunin, A., Brukhin, V., Qiu, W., Zhou, L., Li, F., & 15 othersYi, J., Driscoll, C., Antunes, A., Oleksyk, T. K., Eizirik, E., Perelman, P., Roelke, M., Wildt, D., Diekhans, M., Marques-Bonet, T., Marker, L., Bhak, J., Wang, J., Zhang, G. & O'Brien, S. J., 10 Dec 2015, In: Genome Biology (Online Edition). 16, 19 p., 277.

Research output: Contribution to journal › Journal article › Research › peer-review

70 Citations (Scopus)

180 Downloads (Pure)

Genomic signatures of evolutionary transitions from solitary to group living

Kapheim, K. M., Pan, H., Li, C., Salzberg, S. L., Puiu, D., Magoc, T., Robertson, H. M., Hudson, M. E., Venkat, A., Fischman, B. J., Hernandez, A., Yandell, M., Ence, D., Holt, C., Yocum, G. D., Kemp, W. P., Bosch, J., Waterhouse, R. M., Zdobnov, E. M., Stolle, E., & 32 othersKraus, F. B., Helbing, S., Moritz, R. F. A., Glastad, K. M., Hunt, B. G., Goodisman, M. A. D., Hauser, F., Grimmelikhuijzen, C., Pinheiro, D. G., Nunes, F. M. F., Soares, M. P. M., Tanaka, É. D., Simões, Z. L. P., Hartfelder, K., Evans, J. D., Barribeau, S. M., Johnson, R. M., Massey, J. H., Southey, B. R., Hasselmann, M., Hamacher, D., Biewer, M., Kent, C. F., Zayed, A., Blatti, C., Sinha, S., Johnston, J. S., Hanrahan, S. J., Kocher, S. D., Wang, J., Robinson, G. E. & Zhang, G., 5 Jun 2015, In: Science (New York, N.Y.). 348, 6239, p. 1139-1143 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

191 Citations (Scopus)

Gliadin intake alters intestinal microbiota, glucose and lipid metabolism, and adipose tissue and liver immune cells

Andersen, D., Zhang, L., Roager, H. M., Danneskiold-Samsøe, N. B., Hansen, C. H. F., Bahl, M. I., Hansen, A. K., Brix, S., Hellgren, L. I. & Licht, T. R., Sept 2015, In: Diabetologia. 58, Supplement 1, p. S314-S314 1 p., 653.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling

Basse, A. L., Dixen, K., Yadav, R., Tygesen, M. P., Qvortrup, K., Kristiansen, K., Quistorff, B., Gupta, R., Wang, J. & Hansen, J. B., 19 Mar 2015, In: BMC Genomics. 16, 19 p., 215.

Research output: Contribution to journal › Journal article › Research › peer-review

29 Citations (Scopus)

659 Downloads (Pure)

Gut microbiome development along the colorectal adenoma-carcinoma sequence

Feng, Q., Liang, S., Jia, H., Stadlmayr, A., Tang, L., Lan, Z., Zhang, D., Xia, H., Xu, X., Jie, Z., Su, L., Li, X., Li, X., Li, J., Xiao, L., Huber-Schönauer, U., Niederseer, D., Xu, X., Al-Aama, J. Y., Yang, H., & 6 othersWang, J., Kristiansen, K., Arumugam, M., Tilg, H., Datz, C. & Wang, J., 11 Mar 2015, In: Nature Communications. 6, 13 p., 6528.

Research output: Contribution to journal › Journal article › Research › peer-review

424 Citations (Scopus)

Hepatic NAD salvage pathway is enhanced in mice on a high-fat diet

Penke, M., Larsen, P. S., Schuster, S., Dall, M., Jensen, B. A. H., Gorski, T., Meusel, A., Richter, S., Vienberg, S. G., Treebak, J. T., Kiess, W. & Garten, A., 5 Sept 2015, In: Molecular and Cellular Endocrinology. 412, p. 65-72 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

21 Citations (Scopus)

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel

Huang, J., Howie, B., Mccarthy, S., Memari, Y., Walter, K., Min, J. L., Danecek, P., Malerba, G., Trabetti, E., Zheng, H., Al Turki, S., Amuzu, A., Anderson, C. A., Anney, R., Antony, D., Artigas, M. S., Ayub, M., Bala, S., Barrett, J. C., Barroso, I., & 219 othersBeales, P., Benn, M., Bentham, J., Bhattacharya, S., Birney, E., Blackwood, D., Bobrow, M., Bochukova, E., Bolton, P. F., Bounds, R., Boustred, C., Breen, G., Calissano, M., Carss, K., Pablo Casas, J., Chambers, J. C., Charlton, R., Chatterjee, K., Chen, L., Ciampi, A., Cirak, S., Clapham, P., Clement, G., Coates, G., Cocca, M., Collier, D. A., Cosgrove, C., Cox, T., Craddock, N., Crooks, L., Curran, S., Curtis, D., Daly, A., Day, I. N. M., Day-williams, A., Dedoussis, G., Down, T., Du, Y., Van Duijn, C. M., Dunham, I., Edkins, S., Ekong, R., Ellis, P., Evans, D. M., Farooqi, I. S., Fitzpatrick, D. R., Flicek, P., Floyd, J., Foley, A. R., Franklin, C. S., Futema, M., Gallagher, L., Gasparini, P., Gaunt, T. R., Geihs, M., Geschwind, D., Greenwood, C., Griffin, H., Grozeva, D., Guo, X., Guo, X., Gurling, H., Hart, D., Hendricks, A. E., Holmans, P., Huang, L., Hubbard, T., Humphries, S. E., Hurles, M. E., Hysi, P., Iotchkova, V., Isaacs, A., Jackson, D. K., Jamshidi, Y., Johnson, J., Joyce, C., Karczewski, K. J., Kaye, J., Keane, T., Kemp, J. P., Kennedy, K., Kent, A., Keogh, J., Khawaja, F., Kleber, M. E., Van Kogelenberg, M., Kolb-kokocinski, A., Kooner, J. S., Lachance, G., Langenberg, C., Langford, C., Lawson, D., Lee, I., Van Leeuwen, E. M., Lek, M., Li, R., Li, Y., Liang, J., Lin, H., Liu, R., Lönnqvist, J., Lopes, L. R., Lopes, M., Luan, J., Macarthur, D. G., Mangino, M., Marenne, G., März, W., Maslen, J., Matchan, A., Mathieson, I., Mcguffin, P., Mcintosh, A. M., Mckechanie, A. G., Mcquillin, A., Metrustry, S., Migone, N., Mitchison, H. M., Moayyeri, A., Morris, J., Morris, R., Muddyman, D., Muntoni, F., Nordestgaard, B., Northstone, K., O'donovan, M. C., O'rahilly, S., Onoufriadis, A., Oualkacha, K., Owen, M. J., Palotie, A., Panoutsopoulou, K., Parker, V., Parr, J. R., Paternoster, L., Paunio, T., Payne, F., Payne, S. J., Perry, J. R. B., Pietilainen, O., Plagnol, V., Pollitt, R. C., Povey, S., Quail, M. A., Quaye, L., Raymond, L., Rehnström, K., Ridout, C. K., Ring, S., Ritchie, G. R. S., Roberts, N., Robinson, R. L., Savage, D. B., Scambler, P., Schiffels, S., Schmidts, M., Schoenmakers, N., Scott, R. H., Scott, R. A., Semple, R. K., Serra, E., Sharp, S. I., Shaw, A., Shihab, H. A., Shin, S., Skuse, D., Small, K. S., Smee, C., Smith, G. D., Southam, L., Spasic-boskovic, O., Spector, T. D., St Clair, D., St Pourcain, B., Stalker, J., Stevens, E., Sun, J., Surdulescu, G., Suvisaari, J., Syrris, P., Tachmazidou, I., Taylor, R., Tian, J., Tobin, M. D., Toniolo, D., Traglia, M., Tybjærg-Hansen, A., Valdes, A. M., Vandersteen, A. M., Varbo, A., Vijayarangakannan, P., Visscher, P. M., Wain, L. V., Walters, J. T. R., Wang, G., Wang, J., Wang, Y., Ward, K., Wheeler, E., Whincup, P., Whyte, T., Williams, H. J., Williamson, K. A., Wilson, C., Wilson, S. G., Wong, K., Xu, C., Yang, J., Zaza, G., Zeggini, E., Zhang, F., Zhang, P., Zhang, W., Gambaro, G., Richards, J. B., Durbin, R., Timpson, N. J., Marchini, J. & Soranzo, N., 14 Sept 2015, In: Nature Communications. 6, 9 p., 8111.

Research output: Contribution to journal › Journal article › Research › peer-review

136 Citations (Scopus)

92 Downloads (Pure)

Genome Research and Molecular Bio Medicine

Research output

Search results