Research output per year
Research output per year
Search results
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2018
Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
Müller, O., Bang-Andreasen, T., White, R. A., Elberling, B., Taş, N., Kneafsey, T., Jansson, J. K. & Øvreås, L., Dec 2018, In: Environmental Microbiology. 20, 12, p. 4328-4342 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities
Meisner, A., Jacquiod, S., Snoek, B. L., ten Hooven, F. C. & van der Putten, W. H., 7 Mar 2018, In: Frontiers in Microbiology. 9, 12 p., 294.Research output: Contribution to journal › Journal article › Research › peer-review
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Emissions of biogenic volatile organic compounds from arctic shrub litter are coupled with changes in the bacterial community composition
Svendsen, S. H., Prieme, A., Voriskova, J., Kramshoj, M., Schostag, M. D., Jacobsen, C. S. & Rinnan, R., May 2018, In: Soil Biology & Biochemistry. 120, p. 80-90 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Enhanced bacterial mutualism through an evolved biofilm phenotype
Røder, H. L., Herschend, J., Russel, J., Andersen, M. F., Madsen, J. S., Sørensen, S. J. & Burmølle, M., 1 Nov 2018, In: I S M E Journal. 12, p. 2608-2618 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity
Kang, D., Herschend, J., Abu Al-Soud, W., Mortensen, M. S., Gonzalo, M., Jacquiod, S. J. A. & Sørensen, S. J., Dec 2018, In: Bioresource Technology. 270, p. 303-310Research output: Contribution to journal › Journal article › Research › peer-review
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Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community
Li, L., Dechesne, A., He, Z., Madsen, J. S., Nesme, J., Sørensen, S. J. & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.Research output: Contribution to journal › Letter › peer-review
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Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments
Pinilla-Redondo, R., Riber, L. & Sørensen, S. J., 1 Mar 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Kanfra, X., Liu, B., Beerhues, L., Sørensen, S. J. & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies
Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, S. J. & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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How Microbial Aggregates Protect against Nanoparticle Toxicity
Tang, J., Wu, Y., Esquivel-Elizondo, S., Sørensen, S. J. & Rittmann, B. E., Nov 2018, In: Trends in Biotechnology. 36, 11, p. 1171-1182Research output: Contribution to journal › Review › peer-review
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Impact of free living protozoa and bacterial interactions on multispecies biofilm
Raghupathi, P. K., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis
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Insights into Bacterial Milk Spoilage with Particular Emphasis on the Roles of Heat-Stable Enzymes, Biofilms, and Quorum Sensing
Yuan, L., Sadiq, F. A., Burmølle, M., Liu, T. & He, G., 2018, In: Journal of Food Protection. 81, 10, p. 1651-1660Research output: Contribution to journal › Review › peer-review
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In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina
Behrendt, L., Raina, J-B., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, S. J., Larkum, A. W. D. & Kühl, M., 1 Feb 2018, In: I S M E Journal. 12, p. 556–567 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Interactions in Microbial Community Assembly - from Patterns to Processes and Back
Russel, J., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis
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Interspecies variation in biofilm-forming capacity of psychrotrophic bacterial isolates from Chinese raw milk
Yuan, L., Burmølle, M., Sadiq, F. A., Wang, N. & He, G., Sept 2018, In: Food Control. 91, p. 47-57 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, L. H., Horemans, B., Sørensen, S. J., De Mot, R. & Springael, D., 18 Nov 2018, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, M. K., Olsen, M. L., Kot, W. P., Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 2 May 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment.
Herschend, J., Koren, K., Røder, H. L., Brejnrod, A. D., Kühl, M. & Burmølle, M., 1 Nov 2018, In: Applied and Environmental Microbiology. 84, 21, p. 1-15 e01450-18.Research output: Contribution to journal › Journal article › Research › peer-review
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In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment
Herschend, J., Koren, K., Røder, H. L., Brejnrod, A., Kühl, M. & Burmølle, M., 2018, In: Applied and Environmental Microbiology. 84, 21, e01450.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, L., Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, S. J., 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, P. E., Johansen, A., Brandt, K. K., Priemé, A. & Sørensen, S. J., 13 Dec 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
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Maturation of the gut microbiome and risk of asthma in childhood
Stokholm, J., Blaser, M. J., Thorsen, J., Rasmussen, M. A., Waage, J. E., Vinding, R. K., Schoos, A-M. M., Kunøe, A., Fink, N. R., Chawes, B. L., Bønnelykke, K., Brejnrod, A. D., Mortensen, M. S., Abu Al-Soud, W., Sørensen, S. J. & Bisgaard, H., 1 Dec 2018, In: Nature Communications. 9, 10 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
Raghupathi, P. K., Zupančič, J., Brejnrod, A. D., Jacquiod, S. J. A., Houf, K., Burmølle, M., Gunde-Cimerman, N. & Sørensen, S. J., 1 Mar 2018, In: Applied and Environmental Microbiology. 84, 5, 17 p., e02755-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbial indicators for soil quality
Schloter, M., Nannipieri, P., Sørensen, S. J. & van Elsas, J. D., 1 Jan 2018, In: Biology and Fertility of Soils. 54, 1, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
Liu, W., Russel, J., Burmølle, M., Sørensen, S. J. & Madsen, J. S., 1 Aug 2018, In: I S M E Journal. 12, p. 1940-1951 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives
Pinilla Redondo, R., Cyriaque, V., Jacquiod, S., Sørensen, S. J. & Riber, L., Sept 2018, In: Plasmid. 99, p. 56-67Research output: Contribution to journal › Review › peer-review
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Nutrient Fortification of Human Donor Milk Affects Intestinal Function and Protein Metabolism in Preterm Pigs
Sun, J., Li, Y., Nguyen, D. N., Mortensen, M. S., van den Akker, C. H. P., Skeath, T., Pors, S. E., Pankratova, S., Rudloff, S., Sørensen, S. J., Burrin, D. G., Thymann, T. & Sangild, P. T., 1 Mar 2018, In: Journal of Nutrition. 148, 3, p. 336-347 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Papio spp. Colon microbiome and its link to obesity in pregnancy
Li, X., Rensing, C., Taylor, W. L., Costelle, C., Brejnrod, A. D., Ferry, R. J. . J., Higgins, P. B., Folli, F., Kottapalli, K. R., Hubbard, G. B., Dick, E. J. . J., Yooseph, S., Nelson, K. E. & Schlabritz-Loutsevitch, N., Dec 2018, In: Journal of Medical Primatology. 47, 6, p. 393-401Research output: Contribution to journal › Journal article › Research › peer-review
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Rifaximin has minor effects on bacterial composition, inflammation and bacterial translocation in cirrhosis: a randomized trial
Kimer, N., Pedersen, J. S., Tavenier, J., Christensen, J. E., Busk, T. M., Hobolth, L., Krag, A., Abu Al-Soud, W., Mortensen, M. S., Sørensen, S. J., Møller, S. & Bendtsen, F., Jan 2018, In: Journal of Gastroenterology and Hepatology. 33, 1, p. 307-314 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Short and Long-Term Controls on Active Layer and Permafrost Carbon Turnover Across the Arctic
Faucherre, S., Jørgensen, C. J., Blok, D., Weiss, N., Siewert, M. B., Bang-Andreasen, T., Hugelius, G., Kuhry, P. & Elberling, B., Feb 2018, In: Journal of Geophysical Research. 123, 2, p. 372-390 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial
Wei, S., Mortensen, M. S., Stokholm, J., Brejnrod, A. D., Thorsen, J., Rasmussen, M. A., Trivedi, U., Bisgaard, H. & Sørensen, S. J., Dec 2018, In: EBioMedicine. 38, p. 265-272Research output: Contribution to journal › Journal article › Research › peer-review
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Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome
Wolters, B., Fornefeld, E., Jechalke, S., Su, J-Q., Zhu, Y-G., Sørensen, S. J., Smalla, K. & Jacquiod, S., 18 Nov 2018, In: F E M S Microbiology Reviews. 95, 1, p. 1-14 fiy193.Research output: Contribution to journal › Journal article › Research › peer-review
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Soil bacteria show different tolerance ranges to an unprecedented disturbance
Nunes, I. M., Jurburg, S., Jacquiod, S. J. A., Brejnrod, A. D., Falcão Salles, J., Priemé, A. & Sørensen, S. J., 1 Feb 2018, In: Biology and Fertility of Soils. 54, 2, p. 189–202 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Stability and resilience of the intestinal microbiota in children in daycare - a 12 month cohort study
Mortensen, M. S., Jensen, B. H., Williams, J., Brejnrod, A. D., Andersen, L. OB., Röser, D., Andreassen, B. U., Petersen, A. M., Stensvold, C. R., Sørensen, S. J. & Krogfelt, K. A., 22 Dec 2018, In: BMC Microbiology. 18, p. 1-11 223.Research output: Contribution to journal › Journal article › Research › peer-review
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Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions
Trivedi, U., Madsen, J. S., Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, M., Rumbaugh, K. P. & Sørensen, S. J., 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779Research output: Contribution to journal › Journal article › Research › peer-review
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Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers
Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, M., Sørensen, S. J. & Gunde-Cimerman, N., 30 Jan 2018, In: Frontiers in Microbiology. 9, 13 p., 21.Research output: Contribution to journal › Journal article › Research › peer-review
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Synergistic Interactions within a Multispecies Biofilm Enhance Individual Species Protection against Grazing by a Pelagic Protozoan
Raghupathi, P. K., Liu, W., Sabbe, K., Houf, K., Burmølle, M. & Sørensen, S. J., 9 Jan 2018, In: Frontiers in Microbiology. 8, 11 p., 2649.Research output: Contribution to journal › Journal article › Research › peer-review
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Synergistic Removal of Static and Dynamic Staphylococcus aureus Biofilms by Combined Treatment with a Bacteriophage Endolysin and a Polysaccharide Depolymerase
Olsen, N. M. C., Thiran, E., Hasler, T., Vanzieleghem, T., Belibasakis, G. N., Mahillon, J., Loessner, M. J. & Schmelcher, M., 18 Aug 2018, In: Viruses. 10, 8, p. 1-17 438.Research output: Contribution to journal › Journal article › Research › peer-review
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The bacterial microbiota in first-void urine from men with and without idiopathic urethritis
Frølund, M., Wikström, A., Lidbrink, P., Abu Al-Soud, W., Larsen, N., Harder, C. B., Sørensen, S. J., Jensen, J. S. & Ahrens, P., Jul 2018, In: PLoS ONE. 13, 7, p. 1-19 e0201380.Research output: Contribution to journal › Journal article › Research › peer-review
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The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice
Brandt, N., Kotowska, D., Kristensen, C. M., Olesen, J., Lützhøft, D. O., Halling, J. F., Hansen, M., Al-Soud, W. A., Hansen, L., Kiilerich, P. & Pilegaard, H., Oct 2018, In: Physiological Reports. 6, 20, p. 1-11 e13881.Research output: Contribution to journal › Journal article › Research › peer-review
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The origin of king crabs: hermit crab ancestry under the magnifying glass
Noever, C. & Glenner, H., 19 Jan 2018, In: Zoological Journal of the Linnean Society. 182, 2, p. 300-318Research output: Contribution to journal › Journal article › Research › peer-review
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Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota
Bradford, L. M., Vestergaard, G., Táncsics, A., Zhu, B., Schloter, M. & Lueders, T., 13 Nov 2018, In: Frontiers in Microbiology. 9, 13 p., 2696.Research output: Contribution to journal › Journal article › Research › peer-review
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2017
Adaptation of root growth to increased ambient temperature requires auxin and ethylene coordination in Arabidopsis
Fei, Q., Wei, S., Zhou, Z., Gao, H. & Li, X., 2017, In: Plant Cell Reports. 36, 9, p. 1507-1518 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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All together now: experimental multispecies biofilm model systems
Tan, C. H., Lee, K. W. K., Burmølle, M., Kjelleberg, S. & Rice, S. A., 1 Jan 2017, In: Environmental Microbiology. 19, 1, p. 42-53 12 p.Research output: Contribution to journal › Review › peer-review
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Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D
Barfod, K. K., Roggenbuck, M., Al-Shuweli, S., Fakih, D., Sørensen, S. J. & Sørensen, G. L., Mar 2017, In: Heliyon. 3, 3, 19 p., e00262.Research output: Contribution to journal › Journal article › Research › peer-review
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A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community
Herschend, J., Damholt, Z. B. V., Marquard, A. M., Svensson, B., Sørensen, S. J., Hägglund, P. M. & Burmølle, M., 1 Dec 2017, In: Scientific Reports. 7, 13 p., 16483.Research output: Contribution to journal › Journal article › Research › peer-review
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An alternative anionic bio-sustainable anti-fungal agent: investigation of its mode of action on the fungal cell membrane
Stenbæk, J., Löf, D., Falkman, P., Jensen, B. & Cárdenas, M., 1 Jul 2017, In: Journal of Colloid and Interface Science. 497, p. 242-248 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil
Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, M. H., Al-Soud, W. A., Sørensen, S. J. & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.Research output: Contribution to journal › Journal article › Research › peer-review
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Antagonism correlates with metabolic similarity in diverse bacteria
Russel, J., Røder, H. L., Madsen, J. S., Burmølle, M. & Sørensen, S. J., 3 Oct 2017, In: Proceedings of the National Academy of Science of the United States of America. 114, 40, p. 10684-10688 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media
Trivedi, U., Madsen, J. S., Rumbaugh, K. P., Wolcott, R. D., Burmølle, M. & Sørensen, S. J., 2017, In: Critical Reviews in Microbiology. 43, 4, p. 453-465 12 p.Research output: Contribution to journal › Review › peer-review