Research output per year
Research output per year
Personal profile
Primary fields of research
- Research within veterinary medicine with emphasis on veterinary viral diseases (Foot and Mouth disease)
- Research within molecular microbiology with emphasis on virulence regulation in S. aureus
- Research within food microbiology with emphasis on bacteriophages in food fermentation
Current research
- MetaPhageLAB: Development and evolution of Lactococcus and Leuconostoc phages in Dairies using undefined mesophilic starter cultures, a metgenome approach
- Controlling synergistic and antagonistic microbial activities behind the rich and specific flavours of hard cheese
Teaching
- Co-supervisor at BSc and MSc student projects
- Participate in preparing teaching materials for practical sessions for the course Food Microbiology
- Participate in teaching of the course Food Microbiology
CV
Education
2012 –2015: PhD student, Department of Food Science, University of Copenhagen
2009 – 2011: Master in Biology-Biotechnology, Faculty of Sciences, University of Copenhagen
2003 – 2008: Doctor of Veterinary Medicine (DVM), Faculty of Veterinary Medicine, Addis Ababa University.
Work experience
2008-2009: Instructor/ Lecturer (Biomedical Sciences), College of Veterinary Medicine, Mekelle University
Language
- Amharic (Ethiopian National Language) – native language.
- Arabic
- English
- Danish
Keywords
- Faculty of Science
- Veterinary Medicine
- Molecular Microbial Ecology
- food microbiology
Fingerprint
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- 6 Similar Profiles
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Correlates of gut function in children hospitalized for severe acute malnutrition, a cross-sectional study in Uganda
Lanyero, B., Grenov, B., Barungi, N. N., Namusoke, H., Michaelsen, K. F., Mupere, E., Mølgaard, C., Jiang, P., Frøkiær, H., Wiese, M., Muhammed, M. K., Pesu, H., Nielsen, D. S., Friis, H., Rytter, M. J. H. & Christensen, V. B., 1 Sept 2019, In: Journal of Pediatric Gastroenterology and Nutrition. 69, 3, p. 292-298 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, M. K., Olsen, M. L., Kot, W. P., Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 2 May 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophages
Muhammed, M. K., Krych, L., Nielsen, D. S. & Vogensen, F. K., 2017, In: PLOS ONE. 12, 3, 12 p., e0174223.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
Muhammed, M. K., Kot, W. P., Neve, H., Mahony, J., Castro Mejia, J. L., Krych, L., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J., van Sinderen, D. & Vogensen, F. K., 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Development and Diversity of Lactococcus lactis and Leuconostoc Bacteriophages in Dairies Using Undefined Mesophilic DL-Starter Cultures: A Metagenomic Approach
Muhammed, M. K., 2016, Department of Food Science, Faculty of Science, University of Copenhagen. 242 p.Research output: Book/Report › Ph.D. thesis
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Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
Castro Mejia, J. L., Muhammed, M. K., Kot, W. P., Neve, H., Franz, C. M. A. P., Hansen, L. H., Vogensen, F. K. & Nielsen, D. S., 17 Nov 2015, In: Microbiome. 3, 14 p., 64.Research output: Contribution to journal › Journal article › Research › peer-review
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New insights into Staphylococcus aureus stress tolerance and virulence regulation from an analysis of the role of the ClpP protease in the strains Newman, COL, and SA564
Frees, D., Andersen, J. H., Hemmingsen, L., Koskenniemi, K., Bæk, K. T., Muhammed, M. K., Gudeta, D. D., Nyman, T. A., Sukura, A., Varmanen, P. & Savijoki, K., 1 Jan 2012, In: Journal of Proteome Research. 11, 1, p. 95-108 14 p.Research output: Contribution to journal › Journal article › Research › peer-review