Søren Johannes Sørensen

2015

Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

Klümper, U., Riber, L., Dechesne, A., Sannazzaro, A. I., Hansen, L. H., Sørensen, S. J. & Smets, B. F., 17 Mar 2015, In: I S M E Journal. 9, p. 934-945 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

134 Citations (Scopus)

Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium

Behrendt, L., Brejnrod, A. D., Schliep, M., Sørensen, S. J., Larkum, A. W. D. & Kühl, M., 2015, In: The ISME Journal. 9, 9, p. 2108-2111 4 p.

Research output: Contribution to journal › Letter › peer-review

74 Citations (Scopus)

Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments

Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Hallin, P. F., Sørensen, S. J., Stougaard, P. & Glaring, M. A., 2015, In: Genome Announcements. 3, 3, 2 p., e00585-15.

Research output: Contribution to journal › Journal article › Research › peer-review

2 Citations (Scopus)

651 Downloads (Pure)

Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models

Madsen, J. S., Lin, Y. C., Squyres, G. R., Price-Whelan, A., Torio, A. D. S., Song, A., Cornell, W. C., Sørensen, S. J., Xavier, J. B. & Dietrich, L. E. P., 2015, In: Applied and Environmental Microbiology. 81, 24, p. 8414-8426 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

36 Citations (Scopus)

High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

Ren, D., Madsen, J. S., Sørensen, S. J. & Burmølle, M., 11 Jan 2015, In: ISME Journal. 9, p. 81-89 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

132 Citations (Scopus)

Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1

T'Syen, J., Tassoni, R., Hansen, L. H., Sørensen, S. J., Leroy, B., Sekhar, A., Wattiez, R., De Mot, R. & Springael, D., 26 Aug 2015, In: Environmental Science & Technology (Washington). 49, 19, p. 11703-11713 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment

Macdonald, C. A., Crawley, M. J., Wright, D. J., Kuczynski, J., Robinson, L., Knight, R., Abu Al-Soud, W., Sørensen, S. J., Deng, Y., Zhou, J. & Singh, B. K., 1 Mar 2015, In: Environmental Microbiology. 17, 3, p. 841-854 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

14 Citations (Scopus)

Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment

Røder, H. L., Raghupathi, P. K., Herschend, J., Brejnrod, A. D., Knøchel, S., Sørensen, S. J. & Burmølle, M., 2015, In: Food Microbiology. 51, p. 18-24 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

49 Citations (Scopus)

Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere

Pathan, S. I., Ceccherini, M. T., Hansen, M. A., Giagnoni, L., Ascher, J., Arenella, M., Sørensen, S. J., Pietramellara, G., Nannipieri, P. & Renella, G., 1 Nov 2015, In: Biology and Fertility of Soils. 51, 8, p. 995-1004 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

27 Citations (Scopus)

Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques

Ryssel, M., Johansen, P., Abu Al-Soud, W., Sørensen, S. J., Arneborg, N. & Jespersen, L., 23 Dec 2015, In: International Journal of Food Microbiology. 215, p. 124-30 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

18 Citations (Scopus)

Microbial diversity in a permanently cold and alkaline environment in Greenland

Glaring, M. A., Vester, J. K., Lylloff, J. E., Abu Al-Soud, W., Sørensen, S. J. & Stougaard, P., 27 Apr 2015, In: PLoS ONE. 10, 4, 22 p., e0124863.

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

431 Downloads (Pure)

Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields

Farias, P., Santo, C. E., Branco, R., Francisco, R., Santos, S., Hansen, L. H., Sørensen, S. J. & Morais, P. V., 2015, In: Applied and Environmental Microbiology. 81, 7, p. 2534-2543 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

28 Citations (Scopus)

Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law

Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, S. J., Riber, L., Fickers, P. & Delvigne, F., 1 Aug 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

18 Citations (Scopus)

Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming

Nazaries, L., Tottey, W., Robinson, L., Khachane, A., Abu Al-Soud, W., Sørensen, S. J. & Singh, B. K., 2015, In: Soil Biology & Biochemistry. 89, p. 123-134 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

47 Citations (Scopus)

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

Sipkema, D., de Caralt, S., Morillo, J. A., Abu Al-Soud, W., Sørensen, S. J., Smidt, H. & Uriz, M. J., 1 Oct 2015, In: Environmental Microbiology. 17, 10, p. 3807-3821 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

40 Citations (Scopus)

2014

An improved method for including upper size range plasmids in metamobilomes

Norman, A., Riber, L., Luo, W., Li, L., Hansen, L. H. & Sørensen, S. J., 2014, In: PLoS ONE. 9, 8, 12 p., e104405.

Research output: Contribution to journal › Journal article › Research › peer-review

20 Citations (Scopus)

1042 Downloads (Pure)

Bioinformatic approaches reveal metagenomic characterization of soil microbial community

Xu, Z., Hansen, M. A., Hansen, L. H., Jacquiod, S. J. A. & Sørensen, S. J., 1 Apr 2014, In: P L o S One. 9, 4, 11 p., e93445.

Research output: Contribution to journal › Journal article › Research › peer-review

47 Citations (Scopus)

1002 Downloads (Pure)

Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters

Ellekilde, M., Krych, L., Hansen, C. H. F., Hufeldt, M. R., Dahl, K., Hansen, L. H., Sørensen, S. J., Vogensen, F. K., Nielsen, D. S. & Hansen, A. K., Apr 2014, In: Research in Veterinary Science. 96, 2, p. 241-250 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

49 Citations (Scopus)

Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species

Kot, W. P., Neve, H., Vogensen, F. K., Heller, K. J., Sørensen, S. J. & Hansen, L. H., 2014, In: Genome Announcements. 2, 4, 2 p., e00265-14.

Research output: Contribution to journal › Journal article › Research › peer-review

4 Citations (Scopus)

1024 Downloads (Pure)

Current strategies for mobilome research

Jørgensen, T. S., Kiil, A. S., Hansen, M. A., Sørensen, S. J. & Hansen, L. H., 2014, In: Frontiers in Microbiology. 5, 6 p., 750.

Research output: Contribution to journal › Journal article › Research › peer-review

28 Citations (Scopus)

140 Downloads (Pure)

DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque

Kot, W. P., Vogensen, F. K., Sørensen, S. J. & Hansen, L. H., Feb 2014, In: Journal of Virological Methods. 196, p. 152-156 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

25 Citations (Scopus)

Draft genome sequence of Burkholderia sordidicola S170, a potential plant growth promoter isolated from coniferous forest soil in the Czech Republic

Lladó, S., Xu, Z., Sørensen, S. J. & Baldrian, P., 2014, In: Genome Announcements. 2, 4, 2 p., e00810-14.

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

351 Downloads (Pure)

Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

Riber, L., Poulsen, P. H. B., Abu Al-Soud, W., Hansen, L. B. S., Bergmark, L., Brejnrod, A. D., Norman, A., Hansen, L. H., Magid, J. & Sørensen, S. J., 1 Oct 2014, In: F E M S Microbiology Ecology. 90, 1, p. 206-224 19 p.

Research output: Contribution to journal › Journal article › Research › peer-review

42 Citations (Scopus)

Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter

Pedersen, T. B., Kot, W. P., Hansen, L. H., Sørensen, S. J., Broadbent, J. R., Vogensen, F. K. & Ardö, Y. M., 2014, In: Genome Announcements. 2, 3, 1 p.

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

1166 Downloads (Pure)

Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures

Pedersen, T. B., Kot, W. P., Hansen, L. H., Sørensen, S. J., Broadbent, J. R., Vogensen, F. K. & Ardö, Y. M., 2014, In: Genome Announcements. 2, 3, p. 2 e00484-14.

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

874 Downloads (Pure)

High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions

Ren, D., Madsen, J. S., de la Cruz Perera, C. I., Bergmark, L., Sørensen, S. J. & Burmølle, M., Jul 2014, In: Microbial Ecology. 68, 1, p. 146-154 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

54 Citations (Scopus)

Host-specific microbial communities in three sympatric North Sea sponges

Naim, M. A., Morillo, J. A., Sørensen, S. J., Abu Al-Soud, W., Smidt, H. & Sipkema, D., 1 Nov 2014, In: F E M S Microbiology Ecology. 90, 2, p. 390-403 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

20 Citations (Scopus)

Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome

Jørgensen, T. S., Xu, Z., Hansen, M. A., Sørensen, S. J. & Hansen, L. H., 4 Feb 2014, In: P L o S One. 9, 2, 9 p., e87924.

Research output: Contribution to journal › Journal article › Research › peer-review

55 Citations (Scopus)

741 Downloads (Pure)

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Nielsen, H. B., Almeida, M., Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J-M., dos Santos, M. B. Q., Blom, N., Borruel, N., Burgdorf, K. S., & 31 othersBoumezbeur, F., Casellas, F., Doré, J., Dworzynski, P., Guarner, F., Hansen, T., Hildebrand, F., Kaas, R. S., Kennedy, S., Kristiansen, K., Kultima, J. R., Léonard, P., Levenez, F., Lund, O., Moumen, B., Le Paslier, D., Pons, N., Pedersen, O. B., Prifti, E., Qin, J., Raes, J., Sørensen, S. J., Tap, J., Tims, S., Ussery, D., Yamada, T., Renault, P., Sicheritz-Pontén, T., Bork, P., Wang, J. & MetaHIT Consortium, 1 Aug 2014, In: Nature Biotechnology. 32, 8, p. 822–828 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

454 Citations (Scopus)

Identifying the core microbial community in the gut of fungus-growing termites

Otani, S., Mikaelyan, A., Nobre, T., Hansen, L. H., Koné, NG. A., Sørensen, S. J., Aanen, D. K., Boomsma, J. J., Brune, A. & Thomas-Poulsen, M., 2014, In: Molecular Ecology. 23, 18, p. 4631–4644 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

90 Citations (Scopus)

Interactions in multispecies biofilms: do they actually matter?

Burmølle, M., Ren, D., Bjarnsholt, T. & Sørensen, S. J., Feb 2014, In: Trends in Microbiology. 22, 2, p. 84-91 8 p.

Research output: Contribution to journal › Review › peer-review

235 Citations (Scopus)

Loss of microbial diversity in soils is coincident with reductions in some specialized functions

Singh, B. K., Quince, C., Macdonald, C. A., Khachane, A., Thomas, N., Abu Al-Soud, W., Sørensen, S. J., He, Z., White, D., Sinclair, A., Crooks, B., Zhou, J. & Campbell, C. D., Aug 2014, In: Environmental Microbiology. 16, 8, p. 2408-2420 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

138 Citations (Scopus)

Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine

Møller, A. K., Barkay, T., Hansen, M. A., Norman, A., Hansen, L. H., Sørensen, S. J., Boyd, E. S. & Kroer, N., Jan 2014, In: FEMS Microbiology Ecology. 87, 1, p. 52-63 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

37 Citations (Scopus)

Metabolic variability in bioprocessing: implications of microbial phenotypic heterogeneity

Delvigne, F., Zune, Q., Lara, A. R., Abu Al-Soud, W. & Sørensen, S. J., 1 Dec 2014, In: Trends in Biotechnology. 32, 12, p. 608-616 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

56 Citations (Scopus)

Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts

Duan, Y. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, S. J., Elsgaard, L., Petersen, S. O. & Boon, N., 1 Oct 2014, In: Journal of Applied Microbiology. 117, 4, p. 1066-1078 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

10 Citations (Scopus)

Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris

Behrendt, L., Nielsen, J. L., Sørensen, S. J., Larkum, A. W. D., Winther, J. R. & Kühl, M., May 2014, In: Applied and Environmental Microbiology. 80, 10, p. 3244-3249 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

Sequence and comparative analysis of Leuconostoc dairy bacteriophages

Kot, W. P., Hansen, L. H., Neve, H., Hammer, K., Jacobsen, S., Pedersen, P. D., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 17 Apr 2014, In: International Journal of Food Microbiology. 176, p. 29-37 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

14 Citations (Scopus)

Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics

Pellicer i Nàcher, C., Franck, S., Gülay, A., Ruscalleda, M., Terada, A., Abu Al-Soud, W., Hansen, M. A., Sørensen, S. J. & Smets, B. F., Jan 2014, In: Microbial Biotechnology. 7, 1, p. 32-43 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

31 Citations (Scopus)

56 Downloads (Pure)

Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year

Dealtry, S., Holmsgaard, P. N., Dunon, V., Jechalke, S., Ding, G-C., Kroegerrecklenfort, E., Heuer, H., Hansen, L. H., Springael, D., Zuehlke, S., Sørensen, S. J. & Smalla, K., 2014, In: Applied and Environmental Microbiology. 80, 13, p. 4012-4020 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

36 Citations (Scopus)

Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial

van Zanten, G. C., Krych, L., Röytiö, H., Forssten, S., Lahtinen, S. J., Abu Al-Soud, W., Sørensen, S. J., Svensson, B., Jespersen, L. & Jakobsen, M., 1 Oct 2014, In: F E M S Microbiology Ecology. 90, 1, p. 225-236 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

32 Citations (Scopus)

The giraffe (Giraffa camelopardalis) rumen microbiome

Roggenbuck, M., Sauer, C., Poulsen, M., Bertelsen, M. F. & Sørensen, S. J., 1 Oct 2014, In: F E M S Microbiology Ecology. 90, 1, p. 237-246 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

19 Citations (Scopus)

The microbiome of New World vultures

Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, S. J., Gilbert, M. T. P., Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.

Research output: Contribution to journal › Journal article › Research › peer-review

146 Citations (Scopus)

2013

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

Sundberg, C., Abu Al-Soud, W., Larsson, M., Alm, E., Yekta, S. S., Svensson, B. H., Sørensen, S. J. & Karlsson, A., Sept 2013, In: FEMS Microbiology Ecology. 85, 3, p. 612-626 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

418 Citations (Scopus)

Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments

Puentes-Téllez, P., Hansen, M. A., Sørensen, S. & van Elsas, J., Feb 2013, In: Applied and Environmental Microbiology. 79, 3, p. 1008-1017 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors

Brognaux, A., Han, S., Sørensen, S. J., Lebeau, F., Thonart, P. & Delvigne, F., 31 Oct 2013, In: Microbial Cell Factories. 12, 100, 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

39 Citations (Scopus)

504 Downloads (Pure)

A spatiotemporal view of plasmid loss in biofilms and planktonic cultures: [plus] Erratum

Madsen, J. S., Burmølle, M. & Sørensen, S. J., Dec 2013, In: Biotechnology and Bioengineering (Print). 110, 12, p. 3071-3074 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

6 Citations (Scopus)

Bacterial chitinolytic communities respond to chitin and pH alteration in soil

Kielak, A., Cretoiu, M., Semenov, A., Sørensen, S. J. & van Elsas, J., Jan 2013, In: Applied and Environmental Microbiology. 79, 1, p. 263-272 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

54 Citations (Scopus)

Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation

Møller, A. K., Søborg, D. A., Abu Al-Soud, W., Sørensen, S. J. & Kroer, N., 2013, In: Polar Research. 32, 11 p., 17390.

Research output: Contribution to journal › Journal article › Research › peer-review

55 Citations (Scopus)

1251 Downloads (Pure)

Cell mass and cell cycle dynamics of an asynchronous budding yeast population: Experimental observations, flow cytometry data analysis, and multi-scale modeling

Lencastre Fernandes, R., Carlquist, M., Neves Lundin, A. L., Heins, A-L., Dutta, A., Sørensen, S. J., Jensen, R. A., Nopens, I., Eliasson Lantz, A. & Gernaey, K., Mar 2013, In: Biotechnology and Bioengineering (Print). 110, 3, p. 812-826 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

24 Citations (Scopus)

Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J., & 2 othersHøiby, N. & Bjarnsholt, T., 22 Jul 2013, In: P L o S One. 8, 7, 17 p., e68484.

Research output: Contribution to journal › Journal article › Research › peer-review

50 Citations (Scopus)

2657 Downloads (Pure)

Søren Johannes Sørensen

Research output

Search results