Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming

Loïc Nazaries; William Tottey; Lucinda Robinson; Amit Khachane; Waleed Abu Al-Soud; Søren Johannes Sørensen; Brajesh K. Singh

doi:10.1016/j.soilbio.2015.06.027

Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming

Loïc Nazaries, William Tottey, Lucinda Robinson, Amit Khachane, Waleed Abu Al-Soud, Søren Johannes Sørensen, Brajesh K. Singh^*

^*Corresponding author for this work

Microbiology

47 Citations (Scopus)

Abstract

Soil stores more carbon (C) than plants and atmosphere combined and it is vulnerable to increased microbial respiration under projected global changes including land-use change and future climate scenarios (mainly elevated temperature). Land-use change is known to have a direct impact on soil organic C and soil respiration (Rs) but the mechanisms that drive these changes remain debatable. Similarly, recent studies and simulation models predict that Rs will respond positively to projected climate warming. However, there are significant uncertainties in the magnitude and mechanisms of this feedback response of Rs to global change. To identify the mechanisms of Rs response to land-use change and climate warming, we first investigated Rs from different land use types. Soil respiration was estimated seasonally from four different Scottish land uses: moorland, birch woodland, grassland and pine forest (n = 24). Our results demonstrated that despite a dramatic loss of total C and nitrogen (N) in the soils under birch trees, the Rs in the birch woodland was similar to that of the moorland and pine forest, with Rs in the grassland being significantly higher. The microbial community structure, estimated by Multiplex Terminal-Restriction Fragment Length Polymorphism (MT-RFLP) and 454 pyrosequencing, was significantly different under each land use type. A strong correlation of Rs with soil properties (pH, inorganic N, C:N ratio and moisture) and with microbial community structure was identified.To test the impact of elevated temperature on Rs and to identify potential microbial mechanisms, we performed laboratory incubation studies. Soils from different land uses were incubated at 7 °C (mean annual temperature (MAT) in Scotland) and 10 °C (MAT + 3 °C) with and without the presence of a labile (<sup>13</sup>C-glucose) and recalcitrant (<sup>13</sup>C-lignin) form of C to identify the active groups of microbes and to determine the role of substrate availability on feedback response. The warming treatment induced an increase in Rs rates in all soils. The magnitude of the Rs response to warming was modulated by the land use types, and the Rs was more prominent in soils with high C contents. The addition of glucose substantially increased both total and rate of Rs compared to no substrate- and lignin-amended soils, providing evidence of labile C depletion as a mechanism for the thermal response of Rs. The warming treatment did not impact the composition of the active or total microbial community as revealed by phospholipid fatty acid-stable isotope probing (PLFA-SIP), MT-RFLP and 454 pyrosequencing. Our results showed that the microbial metabolic activity was higher under warming treatment suggesting that a positive feedback of Rs to increased temperature is mediated by changes in substrate availability and microbial metabolic rates.

Original language	English
Journal	Soil Biology & Biochemistry
Volume	89
Pages (from-to)	123-134
Number of pages	12
ISSN	0038-0717
DOIs	https://doi.org/10.1016/j.soilbio.2015.06.027
Publication status	Published - 2015

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10.1016/j.soilbio.2015.06.027

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@article{f75703ddc65047ccb96f4ebb002e9b47,

title = "Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming",

abstract = "Soil stores more carbon (C) than plants and atmosphere combined and it is vulnerable to increased microbial respiration under projected global changes including land-use change and future climate scenarios (mainly elevated temperature). Land-use change is known to have a direct impact on soil organic C and soil respiration (Rs) but the mechanisms that drive these changes remain debatable. Similarly, recent studies and simulation models predict that Rs will respond positively to projected climate warming. However, there are significant uncertainties in the magnitude and mechanisms of this feedback response of Rs to global change. To identify the mechanisms of Rs response to land-use change and climate warming, we first investigated Rs from different land use types. Soil respiration was estimated seasonally from four different Scottish land uses: moorland, birch woodland, grassland and pine forest (n = 24). Our results demonstrated that despite a dramatic loss of total C and nitrogen (N) in the soils under birch trees, the Rs in the birch woodland was similar to that of the moorland and pine forest, with Rs in the grassland being significantly higher. The microbial community structure, estimated by Multiplex Terminal-Restriction Fragment Length Polymorphism (MT-RFLP) and 454 pyrosequencing, was significantly different under each land use type. A strong correlation of Rs with soil properties (pH, inorganic N, C:N ratio and moisture) and with microbial community structure was identified.To test the impact of elevated temperature on Rs and to identify potential microbial mechanisms, we performed laboratory incubation studies. Soils from different land uses were incubated at 7 °C (mean annual temperature (MAT) in Scotland) and 10 °C (MAT + 3 °C) with and without the presence of a labile (13C-glucose) and recalcitrant (13C-lignin) form of C to identify the active groups of microbes and to determine the role of substrate availability on feedback response. The warming treatment induced an increase in Rs rates in all soils. The magnitude of the Rs response to warming was modulated by the land use types, and the Rs was more prominent in soils with high C contents. The addition of glucose substantially increased both total and rate of Rs compared to no substrate- and lignin-amended soils, providing evidence of labile C depletion as a mechanism for the thermal response of Rs. The warming treatment did not impact the composition of the active or total microbial community as revealed by phospholipid fatty acid-stable isotope probing (PLFA-SIP), MT-RFLP and 454 pyrosequencing. Our results showed that the microbial metabolic activity was higher under warming treatment suggesting that a positive feedback of Rs to increased temperature is mediated by changes in substrate availability and microbial metabolic rates.",

keywords = "Climate warming, Land-use change, Microbial community structure, Soil respiration",

author = "Lo{\"i}c Nazaries and William Tottey and Lucinda Robinson and Amit Khachane and {Abu Al-Soud}, Waleed and S{\o}rensen, {S{\o}ren Johannes} and Singh, {Brajesh K.}",

year = "2015",

doi = "10.1016/j.soilbio.2015.06.027",

language = "English",

volume = "89",

pages = "123--134",

journal = "Soil Biology & Biochemistry",

issn = "0038-0717",

publisher = "Pergamon Press",

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TY - JOUR

T1 - Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming

AU - Nazaries, Loïc

AU - Tottey, William

AU - Robinson, Lucinda

AU - Khachane, Amit

AU - Abu Al-Soud, Waleed

AU - Sørensen, Søren Johannes

AU - Singh, Brajesh K.

PY - 2015

Y1 - 2015

N2 - Soil stores more carbon (C) than plants and atmosphere combined and it is vulnerable to increased microbial respiration under projected global changes including land-use change and future climate scenarios (mainly elevated temperature). Land-use change is known to have a direct impact on soil organic C and soil respiration (Rs) but the mechanisms that drive these changes remain debatable. Similarly, recent studies and simulation models predict that Rs will respond positively to projected climate warming. However, there are significant uncertainties in the magnitude and mechanisms of this feedback response of Rs to global change. To identify the mechanisms of Rs response to land-use change and climate warming, we first investigated Rs from different land use types. Soil respiration was estimated seasonally from four different Scottish land uses: moorland, birch woodland, grassland and pine forest (n = 24). Our results demonstrated that despite a dramatic loss of total C and nitrogen (N) in the soils under birch trees, the Rs in the birch woodland was similar to that of the moorland and pine forest, with Rs in the grassland being significantly higher. The microbial community structure, estimated by Multiplex Terminal-Restriction Fragment Length Polymorphism (MT-RFLP) and 454 pyrosequencing, was significantly different under each land use type. A strong correlation of Rs with soil properties (pH, inorganic N, C:N ratio and moisture) and with microbial community structure was identified.To test the impact of elevated temperature on Rs and to identify potential microbial mechanisms, we performed laboratory incubation studies. Soils from different land uses were incubated at 7 °C (mean annual temperature (MAT) in Scotland) and 10 °C (MAT + 3 °C) with and without the presence of a labile (13C-glucose) and recalcitrant (13C-lignin) form of C to identify the active groups of microbes and to determine the role of substrate availability on feedback response. The warming treatment induced an increase in Rs rates in all soils. The magnitude of the Rs response to warming was modulated by the land use types, and the Rs was more prominent in soils with high C contents. The addition of glucose substantially increased both total and rate of Rs compared to no substrate- and lignin-amended soils, providing evidence of labile C depletion as a mechanism for the thermal response of Rs. The warming treatment did not impact the composition of the active or total microbial community as revealed by phospholipid fatty acid-stable isotope probing (PLFA-SIP), MT-RFLP and 454 pyrosequencing. Our results showed that the microbial metabolic activity was higher under warming treatment suggesting that a positive feedback of Rs to increased temperature is mediated by changes in substrate availability and microbial metabolic rates.

AB - Soil stores more carbon (C) than plants and atmosphere combined and it is vulnerable to increased microbial respiration under projected global changes including land-use change and future climate scenarios (mainly elevated temperature). Land-use change is known to have a direct impact on soil organic C and soil respiration (Rs) but the mechanisms that drive these changes remain debatable. Similarly, recent studies and simulation models predict that Rs will respond positively to projected climate warming. However, there are significant uncertainties in the magnitude and mechanisms of this feedback response of Rs to global change. To identify the mechanisms of Rs response to land-use change and climate warming, we first investigated Rs from different land use types. Soil respiration was estimated seasonally from four different Scottish land uses: moorland, birch woodland, grassland and pine forest (n = 24). Our results demonstrated that despite a dramatic loss of total C and nitrogen (N) in the soils under birch trees, the Rs in the birch woodland was similar to that of the moorland and pine forest, with Rs in the grassland being significantly higher. The microbial community structure, estimated by Multiplex Terminal-Restriction Fragment Length Polymorphism (MT-RFLP) and 454 pyrosequencing, was significantly different under each land use type. A strong correlation of Rs with soil properties (pH, inorganic N, C:N ratio and moisture) and with microbial community structure was identified.To test the impact of elevated temperature on Rs and to identify potential microbial mechanisms, we performed laboratory incubation studies. Soils from different land uses were incubated at 7 °C (mean annual temperature (MAT) in Scotland) and 10 °C (MAT + 3 °C) with and without the presence of a labile (13C-glucose) and recalcitrant (13C-lignin) form of C to identify the active groups of microbes and to determine the role of substrate availability on feedback response. The warming treatment induced an increase in Rs rates in all soils. The magnitude of the Rs response to warming was modulated by the land use types, and the Rs was more prominent in soils with high C contents. The addition of glucose substantially increased both total and rate of Rs compared to no substrate- and lignin-amended soils, providing evidence of labile C depletion as a mechanism for the thermal response of Rs. The warming treatment did not impact the composition of the active or total microbial community as revealed by phospholipid fatty acid-stable isotope probing (PLFA-SIP), MT-RFLP and 454 pyrosequencing. Our results showed that the microbial metabolic activity was higher under warming treatment suggesting that a positive feedback of Rs to increased temperature is mediated by changes in substrate availability and microbial metabolic rates.

KW - Climate warming

KW - Land-use change

KW - Microbial community structure

KW - Soil respiration

U2 - 10.1016/j.soilbio.2015.06.027

DO - 10.1016/j.soilbio.2015.06.027

M3 - Journal article

AN - SCOPUS:84937681997

SN - 0038-0717

VL - 89

SP - 123

EP - 134

JO - Soil Biology & Biochemistry

JF - Soil Biology & Biochemistry

ER -

Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming

Abstract

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