Rasmus Nielsen

2020

A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

Moreno-Mayar, J. V., Korneliussen, T. S., Dalal, J., Renaud, G., Albrechtsen, A., Nielsen, R. & Malaspinas, A-S., 1 Feb 2020, In: Bioinformatics. 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

2019

Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

Rascovan, N., Sjogren, K-G., Kristiansen, K., Nielsen, R., Willerslev, E., Desnues, C. & Rasmussen, S., 10 Jan 2019, In: Cell. 176, 1-2, p. 295-305.e10

Research output: Contribution to journal › Journal article › Research › peer-review

62 Citations (Scopus)

Human Disease Variation in the Light of Population Genomics

Prohaska, A., Racimo, F., Schork, A. J., Sikora, M., Stern, A. J., Ilardo, M., Allentoft, M. E., Folkersen, L., Buil, A., Moreno-Mayar, J. V., Korneliussen, T., Geschwind, D., Ingason, A., Werge, T., Nielsen, R. & Willerslev, E., 21 Mar 2019, In: Cell. 177, 1, p. 115-131 17 p.

Research output: Contribution to journal › Review › peer-review

19 Citations (Scopus)

The population history of northeastern Siberia since the Pleistocene

et al., 13 Jun 2019, In: Nature. 570, p. 182–188

Research output: Contribution to journal › Journal article › Research › peer-review

71 Citations (Scopus)

180 Downloads (Pure)

2018

137 ancient human genomes from across the Eurasian steppes

Damgaard, P. D. B., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T. S., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasievl, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G., & 55 othersBazaliiskii, V. I., Beisenov, A., Boldbaatar, B., Boldgiv, B., Dorzhu, C., Ellingvag, S., Erdenebaatar, D., Dajani, R., Dmitriev, E., Evdokimov, V., Frei, K. M., Gromov, A., Goryachev, A., Hakonarson, H., Hegay, T., Khachatryan, Z., Khaskhanov, R., Kitov', E., Kolbina, A., Kubatbek, T., Kukushkin, A., Kukushkin, I., Lau, N., Margaryan, A., Merkyte, I., Mertz, I. V., Mertz, V. K., Mijiddorj, E., Moiyesev, V., Mukhtarova, G., Nurmukhanbetov, B., Orozbekova, Z., Panyushkina, I., Pieta, K., Smrčka, V., Shevnina, I., Logvin, A., Sjögren, K-G., Štolcová, T., Tashbaeva, K., Tkachev, A., Tulegenov, T., Voyakin, D., Yepiskoposyan, L., Undrakhbold, S., Varfolomeev, V., Weber, A., Kradin, N., Allentoft, M. E., Orlando, L. A. A., Nielsen, R., Sikora, M., Heyer, E., Kristiansen, K. & Willerslev, E., 17 May 2018, In: Nature. 557, 7705, p. 369-374 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

111 Citations (Scopus)

A population phylogenetic view of mitochondrial heteroplasmy

Wilton, P. R., Zaidi, A., Makova, K. & Nielsen, R., 2018, In: Genetics. 208, 3, p. 1261-1274 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Early human dispersals within the Americas

Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Allentoft, M. E., Vimala, T., Racimo, F., Rasmussen, S., Margaryan, A., Iraeta Orbegozo, M., Mylopotamitaki, D., Alexandersen, V., Primeau, C., Gregersen, K., Hansen, K. L., Lynnerup, N., Kjær, K., Schroeder, H., Malaspinas, A. S., Sikora, M., & 2 othersNielsen, R. & Willerslev, E., 7 Dec 2018, In: Science (New York, N.Y.). 362, 6419, p. 1, 1-11 12 p., eaav2621.

Research output: Contribution to journal › Journal article › Research › peer-review

92 Citations (Scopus)

Estimating the timing of multiple admixture pulses during local ancestry inference

Medina, P., Thornlow, B., Nielsen, R. & Corbett-Detig, R., 2018, In: Genetics. 210, 3, p. 1089-1107 19 p.

Research output: Contribution to journal › Journal article › Research › peer-review

12 Citations (Scopus)

Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History

Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T., & 18 othersYang, M. A., Fu, Q., Wang, J., Zhou, L., Krogh, A., Zhang, H., Wang, W., Chen, Z., Cai, Z., Yin, Y., Yang, H., Mao, M., Shendure, J., Wang, J., Albrechtsen, A., Jin, X., Nielsen, R. & Xu, X., 4 Oct 2018, In: Cell. 175, 2, p. 347-359, e1-e7

Research output: Contribution to journal › Journal article › Research › peer-review

73 Citations (Scopus)

Human adaptation to extreme environmental conditions

Ilardo, M. & Nielsen, R., 1 Dec 2018, In: Current Opinion in Genetics and Development. 53, p. 77-82 6 p.

Research output: Contribution to journal › Review › peer-review

21 Citations (Scopus)

Molecular footprints of aquatic adaptation including bone mass changes in cetaceans

Zhou, X., Sun, D., Guang, X., Ma, S., Fang, X., Mariotti, M., Nielsen, R., Gladyshev, V. N. & Yang, G., 1 Mar 2018, In: Genome Biology and Evolution. 10, 3, p. 967-975 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

12 Citations (Scopus)

5 Downloads (Pure)

On the number of siblings and p-th cousins in a large population sample

Shchur, V. & Nielsen, R., 1 Nov 2018, In: Journal of Mathematical Biology. 77, 5, p. 1279-1298

Research output: Contribution to journal › Journal article › Research › peer-review

3 Citations (Scopus)

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

Wu, D-D., Ding, X. D., Wang, S., Wójcik, J. M., Zhang, Y., Tokarska, M., Li, Y., Wang, M. S., Faruque, O., Nielsen, R., Zhang, Q. & Zhang, Y-P., 2018, In: Nature Ecology and Evolution. 2, 7, p. 1139-1145 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

59 Citations (Scopus)

Physiological and Genetic Adaptations to Diving in Sea Nomads

Ilardo, M. A., Moltke, I., Korneliussen, T. S., Cheng, J., Stern, A. J., Racimo, F., Damgaard, P. D. B., Sikora, M., Seguin-Orlando, A., Rasmussen, S., van den Munckhof, I. C. L., ter Horst, R., Joosten, L. A. B., Netea, M. G., Salingkat, S., Nielsen, R. & Willerslev, E., 19 Apr 2018, In: Cell. 173, 3, p. 569-580 12 p., e15.

Research output: Contribution to journal › Journal article › Research › peer-review

60 Citations (Scopus)

Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater

Zhou, X., Guang, X., Sun, D., Xu, S., Li, M., Seim, I., Jie, W., Yang, L., Zhu, Q., Xu, J., Gao, Q., Kaya, A., Dou, Q., Chen, B., Ren, W., Li, S., Zhou, K., Gladyshev, V. N., Nielsen, R., Fang, X., & 1 othersYang, G., 2018, In: Nature Communications. 9, 8 p., 1276.

Research output: Contribution to journal › Journal article › Research › peer-review

28 Citations (Scopus)

3 Downloads (Pure)

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

Moreno Mayar, J. V., Potter, B. A., Vinner, L., Steinrucken, M., Rasmussen, S., Terhorst, J., Kamm, J. A., Albrechtsen, A., Malaspinas, A-S., Sikora, M., Reuther, J. D., Irish, J. D., Malhi, R. S., Orlando, L. A. A., Song, Y. S., Nielsen, R., Meltzer, D. J. & Willerslev, E., 11 Jan 2018, In: Nature Genetics. 553, 7687, p. 203-207 5 p.

Research output: Contribution to journal › Letter › peer-review

111 Citations (Scopus)

The Genetic Basis of Adaptation following Plastic Changes in Coloration in a Novel Environment

Corl, A., Bi, K., Luke, C., Challa, A. S., Stern, A. J., Sinervo, B. & Nielsen, R., 2018, In: Current Biology. 28, 18, p. 2970-2977, e1-e7

Research output: Contribution to journal › Journal article › Research › peer-review

35 Citations (Scopus)

2017

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy

Corbett-Detig, R. & Nielsen, R., 3 Jan 2017, In: PLoS Genetics. 13, 1, 40 p., e1006529.

Research output: Contribution to journal › Journal article › Research › peer-review

39 Citations (Scopus)

137 Downloads (Pure)

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

Sikora, M., Seguin-Orlando, A., Sousa, V. C., Albrechtsen, A., Korneliussen, T. S., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, P. R., Bosch, M. D., Renaud, G., Allentoft, M. E., Margaryan, A., Vasilyev, S. V., Veselovskaya, E. V., Borutskaya, S. B., Deviese, T., Comeskey, D., Higham, T., Manica, A., & 7 othersFoley, R., Meltzer, D. J., Nielsen, R., Excoffler, L., Lahr, M. M., Orlando, L. A. A. & Willerslev, E., 3 Nov 2017, In: Science. 358, 6363, p. 659-662 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

93 Citations (Scopus)

43 Downloads (Pure)

Archaic adaptive introgression in TBX15/WARS2

Racimo, F., Gokhman, D., Fumagalli, M., Ko, A., Hansen, T., Moltke, I., Albrechtsen, A., Carmel, L., Huerta-Sánchez, E. & Nielsen, R., 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.

Research output: Contribution to journal › Journal article › Research › peer-review

50 Citations (Scopus)

83 Downloads (Pure)

Composite likelihood method for inferring local pedigrees

Ko, A. & Nielsen, R., 21 Aug 2017, In: PLoS Genetics. 13, 8, 21 p., e1006963.

Research output: Contribution to journal › Journal article › Research › peer-review

10 Citations (Scopus)

108 Downloads (Pure)

Fast admixture analysis and population tree estimation for SNP and NGS data

Cheng, J. Y., Mailund, T. & Nielsen, R., 15 Jul 2017, In: Bioinformatics. 33, 14, p. 2148-2155 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

13 Citations (Scopus)

Genome-wide signatures of complex introgression and adaptive evolution in the big cats

Figueiró, H. V., Li, G., Trindade, F. J., Assis, J., Pais, F., Fernandes, G., Santos, S. H. D., Hughes, G. M., Komissarov, A., Antunes, A., Trinca, C. S., Rodrigues, M. R., Linderoth, T., Bi, K., Silveira, L., Azevedo, F. C. C., Kantek, D., Ramalho, E., Brassaloti, R. A., Villela, P. M. S., & 13 othersNunes, A. L. V., Teixeira, R. H. F., Morato, R. G., Loska, D., Saragüeta, P., Gabaldón, T., Teeling, E. C., O'Brien, S. J., Nielsen, R., Coutinho, L. L., Oliveira, G., Murphy, W. J. & Eizirik, E., 1 Jan 2017, In: Science Advances. 3, 7, 13 p., e1700299.

Research output: Contribution to journal › Journal article › Research › peer-review

38 Citations (Scopus)

Natural selection on genes related to cardiovascular health in high-altitude adapted Andeans

Crawford, J. E., Amaru, R., Song, J., Julian, C. G., Racimo, F., Cheng, J. Y., Guo, X., Yao, J., Ambale-Venkatesh, B., Lima, J. A., Rotter, J. I., Stehlik, J., Moore, L. G., Prchal, J. T. & Nielsen, R., 2 Nov 2017, In: American Journal of Human Genetics. 101, 5, p. 752-767 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

42 Citations (Scopus)

Q&A: where did the Neanderthals go?

Harris, K. & Nielsen, R., 1 Sept 2017, In: BMC Biology. 15, 3 p., 73.

Research output: Contribution to journal › Comment/debate › Research › peer-review

3 Citations (Scopus)

60 Downloads (Pure)

Selection in Europeans on fatty acid desaturases associated with dietary changes

Buckley, M. T., Racimo, F., Allentoft, M. E., Jensen, M. K., Jonsson, A. E., Huang, H., Hormozdiari, F., Sikora, M., Marnetto, D., Eskin, E., Jørgensen, M. E., Grarup, N., Pedersen, O. B., Hansen, T., Kraft, P., Willerslev, E. & Nielsen, R., Jun 2017, In: Molecular Biology and Evolution. 34, 6, p. 1307-1318 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

37 Citations (Scopus)

122 Downloads (Pure)

Tracing the peopling of the world through genomics

Nielsen, R., Akey, J. M., Jakobsson, M., Pritchard, J. K., Tishkoff, S. & Willerslev, E., 18 Jan 2017, In: Nature. 541, 7637, p. 302-310 9 p.

Research output: Contribution to journal › Review › peer-review

231 Citations (Scopus)

2016

A genomic history of aboriginal Australia

Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., & 55 othersEriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M. & Willerslev, E., 2016, In: Nature. 538, 7624, p. 207-214 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

186 Citations (Scopus)

Detecting recent selective sweeps while controlling for mutation rate and background selection

Huber, C. D., DeGiorgio, M., Hellmann, I. & Nielsen, R., 2016, In: Molecular Ecology. 25, 1, p. 142-156 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

62 Citations (Scopus)

Estimating IBD tracts from low coverage NGS data

Garrett Vieira, F. J., Albrechtsen, A. & Nielsen, R., 15 Jul 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

16 Citations (Scopus)

Evolution of GOUNDRY, a cryptic subgroup of Anopheles gambiae s.l., and its impact on susceptibility to Plasmodium infection

Crawford, J. E., Riehle, M. M., Markianos, K., Bischoff, E., Guelbeogo, W. M., Gneme, A., Sagnon, NF., Vernick, K. D., Nielsen, R. & Lazzaro, B. P., 2016, In: Molecular Ecology. 25, 7, p. 1494-1510 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

8 Citations (Scopus)

Fumio Tajima and the origin of modern population genetics

Nielsen, R., 2016, In: Genetics. 204, 2, p. 389-390 2 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic analyses inform on migration events during the peopling of Eurasia

Pagani, L., Lawson, D. J., Jagoda, E., Moerseburg, A., Eriksson, A., Mitt, M., Clemente, F., Hudjashov, G., DeGiorgio, M., Saag, L., Wall, J. D., Cardona, A., Maegi, R., Sayres, M. A. W., Kaewert, S., Inchley, C., Scheib, C. L., Jaerve, M., Karmin, M., Jacobs, G. S., & 78 othersAntao, T., Iliescu, F. M., Kushniarevich, A., Ayub, Q., Tyler-Smith, C., Xue, Y., Yunusbayev, B., Tambets, K., Mallick, C. B., Saag, L., Pocheshkhova, E., Andriadze, G., Muller, C. E., Westaway, M. C., Lambert, D. M., Zoraqi, G., Turdikulova, S., Dalimova, D., Sabitov, Z., Sultana, G. N. N., Lachance, J., Tishkoff, S., Momynaliev, K., Isakova, J., Damba, L. D., Gubina, M., Nymadawa, P., Evseeva, I., Atramentova, L., Utevska, O., Ricaut, F-X., Brucato, N., Sudoyo, H., Letellier, T., Cox, M. P., Barashkov, N. A., Škaro, V., Mulahasanovic, L., Primorac, D., Sahakyan, H., Mormina, M., Eichstaedt, C. A., Lichman, D. V., Abdullah, S., Chaubey, G., Wee, J. T. S., Mihailov, E., Karunas, A., Litvinov, S., Khusainova, R., Ekomasova, N., Akhmetova, V., Khidiyatova, I., Marjanovi, D., Yepiskoposyan, L., Behar, D. M., Balanovska, E., Metspalu, A., Derenko, M., Malyarchuk, B., Voevoda, M., Fedorova, S. A., Osipova, L. P., Mirazon, M., Gerbault, P., Leavesley, M., Migliano, A. B., Petraglia, M., Balanovsky, O., Khusnutdinova, E. K., Metspalu, E., Thomas, M. G., Manica, A., Nielsen, R., Villems, R., Willerslev, E., Kivisild, T. & Metspalu, M., 1 Jul 2016, In: Nature. 538, 7624, p. 238-242 5 p.

Research output: Contribution to journal › Letter › peer-review

180 Citations (Scopus)

Postglacial viability and colonization in North America’s ice-free corridor

Pedersen, M. W., Ruter, A. H., Schweger, C., Friebe, H., Staff, R. A., Kjeldsen, K. K., Zepeda Mendoza, M. L., Beaudoin, A. B., Zutter, C., Larsen, N. K., Potter, B. A., Nielsen, R., Rainville, R. A., Orlando, L. A. A., Meltzer, D. J., Kjær, K. H. & Willerslev, E., 10 Aug 2016, In: Nature. 537, 7618, p. 45–49 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

154 Citations (Scopus)

REPdenovo: Inferring De Novo repeat motifs from short sequence reads

Chu, C., Nielsen, R. & Wu, Y., 2016, In: PLoS ONE. 11, 3, 17 p., e0150719.

Research output: Contribution to journal › Journal article › Research › peer-review

24 Citations (Scopus)

The genetic cost of Neanderthal introgression

Harris, K. & Nielsen, R., Jun 2016, In: Genetics (Online). 203, 2, p. 881-891 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

132 Citations (Scopus)

The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication

Wang, H., Xu, X., Garrett Vieira, F. J., Xiao, Y., Li, Z., Wang, J., Nielsen, R. & Chu, C., 1 Jul 2016, In: Molecular Plant. 9, 7, p. 975-985 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

58 Citations (Scopus)

2015

A genome-wide scan for signatures of directional selection in domesticated pigs

Moon, S., Kim, T. H., Lee, K. T., Kwak, W., Lee, T., Lee, S. W., Kim, M. J., Cho, K., Kim, N., Chung, W. H., Sung, S., Park, T., Cho, S., Groenen, M. A. M., Nielsen, R., Kim, Y. & Kim, H., 25 Feb 2015, In: BMC Genomics. 16, 1, 130.

Research output: Contribution to journal › Journal article › Research › peer-review

41 Citations (Scopus)

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

Karmin, M., Saag, L., Vicente, M., Wilson Sayres, M. A., Järve, M., Talas, U. G., Rootsi, S., Ilumäe, A-M., Mägi, R., Mitt, M., Pagani, L., Puurand, T., Faltyskova, Z., Clemente, F., Cardona, A., Metspalu, E., Sahakyan, H., Yunusbayev, B., Hudjashov, G., DeGiorgio, M., & 80 othersLoogväli, E-L., Eichstaedt, C., Eelmets, M., Chaubey, G., Tambets, K., Litvinov, S., Mormina, M., Xue, Y., Ayub, Q., Zoraqi, G., Korneliussen, T. S., Akhatova, F., Lachance, J., Tishkoff, S., Momynaliev, K., Ricaut, F-X., Kusuma, P., Razafindrazaka, H., Pierron, D., Cox, M. P., Sultana, G. N. N., Willerslev, R., Muller, C., Westaway, M., Lambert, D., Skaro, V., Kovačevic, L., Turdikulova, S., Dalimova, D., Khusainova, R., Trofimova, N., Akhmetova, V., Khidiyatova, I., Lichman, D. V., Isakova, J., Pocheshkhova, E., Sabitov, Z., Barashkov, N. A., Nymadawa, P., Mihailov, E., Seng, J. W. T., Evseeva, I., Migliano, A. B., Abdullah, S., Andriadze, G., Primorac, D., Atramentova, L., Utevska, O., Yepiskoposyan, L., Marjanovic, D., Kushniarevich, A., Behar, D. M., Gilissen, C., Vissers, L., Veltman, J. A., Balanovska, E., Derenko, M., Malyarchuk, B., Metspalu, A., Fedorova, S., Eriksson, A., Manica, A., Mendez, F. L., Karafet, T. M., Veeramah, K. R., Bradman, N., Hammer, M. F., Osipova, L. P., Balanovsky, O., Khusnutdinova, E. K., Johnsen, K., Remm, M., Thomas, M. G., Tyler-Smith, C., Underhill, P. A., Willerslev, E., Nielsen, R., Metspalu, M., Villems, R. & Kivisild, T., 1 Apr 2015, In: Genome Research. 25, 4, p. 459-466 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

177 Citations (Scopus)

Association mapping for compound heterozygous traits using phenotypic distance and integer programming

Gusfield, D. & Nielsen, R., 1 Jan 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 136-147 12 p. A1. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 9289).

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Evidence for archaic adaptive introgression in humans

Racimo, F., Sankararaman, S., Nielsen, R. & Huerta-Sánchez, E., 18 May 2015, In: Nature Reviews Genetics. 16, 6, p. 359-371 13 p.

Research output: Contribution to journal › Review › peer-review

232 Citations (Scopus)

Fitting the Balding-Nichols model to forensic databases

Rohlfs, R. V., Aguiar, V. R. C., Lohmueller, K. E., Castro, A. M., Ferreira, A. C. S., Almeida, V. C. O., Louro, I. D. & Nielsen, R., 16 Jul 2015, In: Forensic Science International: Genetics. 19, p. 86-91 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

1 Citation (Scopus)

Genomic evidence for the Pleistocene and recent population history of Native Americans

Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera Morales, C. E., Avila Arcos, M. D. C., Malaspinas, A. S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno Mayar, J. V., Korneliussen, T. S., Pierre, T. L., Rasmussen, M., & 81 othersCampos, P., Damgaard, P. D. B., Allentoft, M. E., Lindo, J., Metspalu, E., Rodríguez-Varela, R., Mansilla, J., Henrickson, C., Seguin-Orlando, A., Malmström, H., Stafford jr., T., Shringarpure, S. S., Moreno-Estrada, A., Karmin, M., Tambets, K., Bergström, A., Xue, Y., Warmuth, V., Friend, A. D., Singarayer, J., Valdes, P., Balloux, F., Leboreiro, I., Vera, J. L., Rangel-Villalobos, H., Pettener, D., Luiselli, D., Davis, L. G., Heyer, E., Zollikofer, C. P. E., Ponce de León, M. S., Smith, C. I., Grimes, V., Pike, K-A., Deal, M., Fuller, B. T., Arriaza, B., Standen, V., Luz, M. F., Ricaut, F., Guidon, N., Osipova, L., Voevoda, M. I., Posukh, O. L., Balanovsky, O., Lavryashina, M., Bogunov, Y., Khusnutdinova, E., Gubina, M., Balanovska, E., Fedorova, S., Litvinov, S., Malyarchuk, B., Derenko, M., Mosher, M. J., Archer, D., Cybulski, J., Petzelt, B., Mitchell, J., Worl, R., Norman, P. J., Parham, P., Kemp, B. M., Kivisild, T., Tyler-Smith, C., Sandhu, M. S., Crawford, M., Villems, R., Smith, D. G., Waters, M. R., Goebel, T., Johnson, J. R., Malhi, R. S., Jakobsson, M., Meltzer, D. J., Manica, A., Durbin, R., Bustamante, C. D., Song, Y. S., Nielsen, R. & Willerslev, E., 21 Aug 2015, In: Science (New York, N.Y.). 349, 6250, 6250.

Research output: Contribution to journal › Journal article › Research › peer-review

227 Citations (Scopus)

Greenlandic Inuit show genetic signatures of diet and climate adaptation

Fumagalli, M., Moltke, I., Grarup, N., Racimo, F., Bjerregaard, P., Jørgensen, M. E., Korneliussen, T. S., Gerbault, P., Skotte, L., Linneberg, A. R., Christensen, C., Brandslund, I., Jørgensen, T., Huerta-Sánchez, E., Schmidt, E. B., Pedersen, O. B., Hansen, T., Albrechtsen, A. & Nielsen, R., 18 Sept 2015, In: Science (New York, N.Y.). 349, 6254, p. 1343-1347 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

236 Citations (Scopus)

Introduction: Genomics and philosophy of race

Winther, R. G., Millstein, R. L. & Nielsen, R., 1 Aug 2015, In: Studies in History and Philosophy of Science Part C :Studies in History and Philosophy of Biological and Biomedical Sciences. 52, p. 1-4 4 p.

Research output: Contribution to journal › Editorial › peer-review

1 Citation (Scopus)

Number of genes controlling a quantitative trait in a hybrid zone of the aposematic frog ranitomeya imitator

Vestergaard, J. S., Twomey, E., Larsen, R., Summers, K. & Nielsen, R., 22 May 2015, In: Proceedings of the Royal Society B: Biological Sciences. 282, 1807, 20141950.

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

Phylogenetic ANOVA: the expression variance and evolution model for quantitative trait evolution

Rohlfs, R. V. & Nielsen, R., Sept 2015, In: Systematic Biology. 64, 5, p. 695-708 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

32 Citations (Scopus)

Population genomics of bronze age Eurasia

Allentoft, M. E., Sikora, M., Sjogren, K-G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P. D. B., Schroeder, H., Ahlstrom, T., Vinner, L., Malaspinas, A. S., Margaryan, A., Higham, T., Chivall, D., Lynnerup, N., Harvig, L. L., Baron, J., Della Casa, P., Dabrowski, P., Duffy, P. R., & 46 othersEbel, A. V., Epimakhov, A., Frei, K., Furmanek, M., Gralak, T., Gromov, A., Gronkiewicz, S., Grupe, G., Hajdu, T., Jarysz, R., Khartanovich, V., Khokhlov, A., Kiss, V., Kolar, J., Kriiska, A., Lasak, I., Longhi, C., McGlynn, G., Merkevicius, A., Merkyte, I., Metspalu, M., Mkrtchyan, R., Moiseyev, V., Paja, L., Palfi, G., Pokutta, D., Pospieszny, L., Price, T. D., Saag, L., Sablin, M., Shishlina, N., Smrcka, V., Soenov, V. I., Szeverenyi, V., Toth, G., Trifanova, S. V., Varul, L., Vicze, M., Yepiskoposyan, L., Zhitenev, V., Orlando, L. A. A., Sicheritz-Ponten, T., Brunak, S., Nielsen, R., Kristiansen, K. & Willerslev, E., 10 Jun 2015, In: Nature Genetics. 522, 7555, p. 167-172 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

617 Citations (Scopus)

Reticulate speciation and barriers to introgression in the anopheles gambiae species complex

Crawford, J. E., Riehle, M. M., Guelbeogo, W. M., Gneme, A., Sagnon, N., Vernick, K. D., Nielsen, R. & Lazzaro, B. P., 1 Nov 2015, In: Genome Biology and Evolution. 7, 11, p. 3116-3131 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

21 Citations (Scopus)

The ancestry and affiliations of Kennewick Man

Rasmussen, M., Sikora, M., Albrechtsen, A., Korneliussen, T. S., Moreno Mayar, J. V., Poznik, G. D., Zollikofer, C. P. E., Ponce de León, M. S., Allentoft, M. E., Moltke, I., Jónsson, H., Valdiosera Morales, C. E., Malhi, R. S., Orlando, L. A. A., Bustamante, C. D., Stafford jr., T., Meltzer, D. J., Nielsen, R. & Willerslev, E., 18 Jun 2015, In: Nature. 523, 7561, p. 455-458 4 p.

Research output: Contribution to journal › Letter › peer-review

118 Citations (Scopus)

316 Downloads (Pure)

Rasmus Nielsen

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