Bent Petersen

2020

Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y., & 6 othersDalén, L., Marquès-Bonet, T., Zhang, G., Antunes, A., Gilbert, M. T. P. & Lalueza-Fox, C., 6 Jan 2020, In: Current biology : CB. 30

Research output: Contribution to journal › Journal article › Research › peer-review

6 Citations (Scopus)

2019

A Novel and Direct Metamobilome Approach improves the Detection of Larger-sized Circular Elements across Kingdoms

Alanin, K. S., Joergensen, T. S., Browne, P. D., Petersen, B., Riber, L., Kot, W. P. & Hansen, L. H., 2019, (Submitted) In: bioRxiv. 761098.

Research output: Contribution to journal › Journal article › Research

1 Downloads (Pure)

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise

Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, B., Dalen, L., Benz, B. W., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P. & Irestedt, M., 1 May 2019, In: GigaScience. 8, 5, 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

15 Downloads (Pure)

Evolutionary History, Genomic Adaptation to Toxic Diet and Extinction of the Carolina Parakeet

Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Stiller, J., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y., & 6 othersDalén, L., Marquès-Bonet, T., Zhang, G., Antunes, A., Gilbert, M. T. P. & Lalueza-Fox, C., 24 Jul 2019, In: SSRN Electronic Journal.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic analyses reveal an absence of contemporary introgressive admixture between fin whales and blue whales, despite known hybrids

Westbury, M. V., Petersen, B. & Lorenzen, E. D., 1 Sept 2019, In: PLoS ONE. 14, 9, 13 p., e0222004.

Research output: Contribution to journal › Journal article › Research › peer-review

3 Citations (Scopus)

12 Downloads (Pure)

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, R. S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S. K., Kjeldgaard, J., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Bego, A., & 108 othersRees, C., Cassar, S., Coventry, K., Collignon, P., Allerberger, F., Rahube, T. O., Oliveira, G., Ivanov, I., Vuthy, Y., Sopheak, T., Yost, C. K., Ke, C., Zheng, H., Baisheng, L., Jiao, X., Donado-Godoy, P., Coulibaly, K. J., Jergović, M., Hrenovic, J., Karpíšková, R., Villacis, J. E., Legesse, M., Eguale, T., Heikinheimo, A., Malania, L., Nitsche, A., Brinkmann, A., Saba, C. K. S., Kocsis, B., Solymosi, N., Thorsteinsdottir, T. R., Hatha, A. M., Alebouyeh, M., Morris, D., Cormican, M., O’Connor, L., Moran-Gilad, J., Alba, P., Battisti, A., Shakenova, Z., Kiiyukia, C., Ng’eno, E., Raka, L., Avsejenko, J., Bērziņš, A., Bartkevics, V., Penny, C., Rajandas, H., Parimannan, S., Haber, M. V., Pal, P., Jeunen, G. J., Gemmell, N., Fashae, K., Holmstad, R., Hasan, R., Shakoor, S., Rojas, M. L. Z., Wasyl, D., Bosevska, G., Kochubovski, M., Radu, C., Gassama, A., Radosavljevic, V., Wuertz, S., Zuniga-Montanez, R., Tay, M. Y. F., Gavačová, D., Pastuchova, K., Truska, P., Trkov, M., Esterhuyse, K., Keddy, K., Cerdà-Cuéllar, M., Pathirage, S., Norrgren, L., Örn, S., Larsson, D. G. J., Heijden, T. V. D., Kumburu, H. H., Sanneh, B., Bidjada, P., Njanpop-Lafourcade, B. M., Nikiema-Pessinaba, S. C., Levent, B., Meschke, J. S., Beck, N. K., Van, C. D., Phuc, N. D., Tran, D. M. N., Kwenda, G., Tabo, D. A., Wester, A. L., Cuadros-Orellana, S., Amid, C., Cochrane, G., Sicheritz-Ponten, T., Schmitt, H., Alvarez, J. R. M., Aidara-Kane, A., Pamp, S. J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M. P., Vigre, H., Petersen, T. N. & Aarestrup, F. M., 1 Dec 2019, In: Nature Communications. 10, 1, 12 p., 1124.

Research output: Contribution to journal › Journal article › Research › peer-review

152 Citations (Scopus)

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Rey-Iglesia, A., Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Ahlmann Nielsen, A., Röder, T., Pedersen, L. B., Næsborg-Nielsen, C., Sinding, M-H. S., Rath, M. F., Li, Z., Petersen, B., Gilbert, M. T. P., Bunce, M., Mourier, T. & Hansen, A. J., Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

2 Citations (Scopus)

Narwhal Genome Reveals Long-Term Low Genetic Diversity despite Current Large Abundance Size

Westbury, M. V., Petersen, B., Garde, E., Heide-Jørgensen, M. P. & Lorenzen, E. D., 31 May 2019, In: iScience. 15, p. 592-599

Research output: Contribution to journal › Journal article › Research › peer-review

11 Citations (Scopus)

27 Downloads (Pure)

NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

Klausen, M. S., Jespersen, M. C., Nielsen, H., Jensen, K. K., Jurtz, V. I., Sønderby, C. K., Sommer, M. O. A., Winther, O., Nielsen, M., Petersen, B. & Marcatili, P., Jun 2019, In: Proteins: Structure, Function and Bioinformatics. 87, 6, p. 520-527

Research output: Contribution to journal › Journal article › Research › peer-review

91 Citations (Scopus)

Palaeogenomic insights into the origins of French grapevine diversity

Ramos-Madrigal, J., Runge, A. K. W., Bouby, L., Lacombe, T., Samaniego Castruita, J. A., Adam-Blondon, A-F., Figueiral, I., Hallavant, C., Martínez-Zapater, J. M., Schaal, C., Töpfer, R., Petersen, B., Sicheritz-Pontén, T., This, P., Bacilieri, R., Gilbert, M. T. P. & Wales, N., 1 Jun 2019, In: Nature Plants. 5, 6, p. 595-603 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

32 Citations (Scopus)

The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution

Jorgensen, T. S., Petersen, B., Petersen, H. C. B., Browne, P. D., Prost, S., Stillman, J. H., Hansen, L. H. & Hansen, B. W., 1 May 2019, In: Genome Biology and Evolution. 11, 5, p. 1440-1450

Research output: Contribution to journal › Journal article › Research › peer-review

4 Citations (Scopus)

14 Downloads (Pure)

The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi

Jorgensen, T. S., Nielsen, B. L. H., Petersen, B., Browne, P. D., Hansen, B. W. & Hansen, L. H., 1 May 2019, In: G3: Genes, Genomes, Genetics (Bethesda). 9, 5, p. 1295-1302

Research output: Contribution to journal › Journal article › Research › peer-review

1 Citation (Scopus)

14 Downloads (Pure)

2018

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, J. A., Maretty, L., Krogh, A., Petersen, B., Sibbesen, J. A., Liu, S., Have, C. T., Bork-Jensen, J., Guo, X., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J. & Brunak, S., 1 Jul 2018, In: Nature Genetics. 50, p. 1054-1059 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Antibodies to intercellular adhesion molecule 1-binding Plasmodium falciparum erythrocyte membrane protein 1-DBLβ are biomarkers of protective immunity to malaria in a cohort of young children from Papua New Guinea

Tessema, S. K., Utama, D., Chesnokov, O., Hodder, A. N., Lin, C. S., Harrison, G. L. A., Jespersen, J. S., Petersen, B., Tavul, L., Siba, P., Kwiatkowski, D., Lavstsen, T., Hansen, D. S., Oleinikov, A. V., Mueller, I. & Barry, A. E., 1 Aug 2018, In: Infection and Immunity. 86, 8, p. 1-14 14 p., e00485-17.

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, M. L., Danish Pan Genome Consortium, Brunak, S., Izarzugaza, J. M. G., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J., Eiberg, H. R. L. & Kristiansen, K., 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

Research output: Contribution to journal › Journal article › Research › peer-review

8 Citations (Scopus)

69 Downloads (Pure)

Genome analyses show strong selection on coloration, morphological and behavioral phenotypes in birds-of-paradise

Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, B., Dalen, L., Benz, B. W., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P. & Irestedt, M., 16 May 2018, (Accepted/In press) In: bioRxiv.

Research output: Contribution to journal › Journal article › Research › peer-review

Improved de novo genomic assembly for the domestic donkey

Renaud, G., Petersen, B., Seguin-orlando, A., Bertelsen, M. F., Waller, A., Newton, R., Paillot, R., Bryant, N., Vaudin, M., Librado, P. & Orlando, L., 4 Apr 2018, In: Science Advances. 4, 4, eaaq0392.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

22 Downloads (Pure)

Improved ontology for eukaryotic single-exon coding sequences in biological databases

Jorquera, R., González, C., Clausen, P. T. L. C., Petersen, B. & Holmes, D. S., 1 Jan 2018, In: Database: The Journal of Biological Databases and Curation. 2018, 6 p., bay089.

Research output: Contribution to journal › Journal article › Research › peer-review

2 Citations (Scopus)

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K., & 7 othersHeide-Jørgensen, M. P., Petersen, B., Sicheritz-Ponten, T., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., 5 Nov 2018, In: Current Biology. 28, 21, p. 3441-3449

Research output: Contribution to journal › Journal article › Research › peer-review

33 Citations (Scopus)

69 Downloads (Pure)

"Out of the Can": A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus

Machado, A. M., Tørresen, O. K., Kabeya, N., Couto, A., Petersen, B., Felicio, M., Campos, P. F., Fonseca, E., Bandarra, N., Lopes-Marques, M., Ferraz, R., Ruivo, R., Fonseca, M. M., Jentoft, S., Monroig, Ó., da Fonseca, R. R. & Castro, L. F. C., 9 Oct 2018, In: Genes. 9, 10, p. 1-13 485.

Research output: Contribution to journal › Journal article › Research › peer-review

16 Citations (Scopus)

82 Downloads (Pure)

Population genomics of grey wolves and wolf-like canids in North America

Sinding, M. H. S., Gopalakrishan, S., Vieira, F. G., Samaniego Castruita, J. A., Raundrup, K., Heide Jørgensen, M. P., Meldgaard, M., Petersen, B., Sicheritz-Ponten, T., Mikkelsen, J. B., Marquard-Petersen, U., Dietz, R., Sonne, C., Dalén, L., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., Nov 2018, In: PLOS Genetics. 14, 11, 23 p., e1007745.

Research output: Contribution to journal › Journal article › Research › peer-review

12 Citations (Scopus)

38 Downloads (Pure)

2017

Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Danish Pan Genome Consortium, Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Rasmussen, S., Kristiansen, K. & Brunak, S., Aug 2017, In: PLOS Genetics. 13, 8, p. e1006834

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Assembly and analysis of 100 full MHC haplotypes from the Danish population

Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., & 39 othersYe, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., Beusekom, J. V., Espeseth, T., Flindt, E., Halager, A. E., Hellard, S. L., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, T., Bolund, L., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Gupta, R., Rasmussen, S., Børglum, A. D., Wang, J., Eiberg, H. R. L., Kristiansen, K., Brunak, S. & Schierup, M. H., Sept 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

150 Downloads (Pure)

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Mak, S., Gopalakrishnan, S., Carøe, C., Geng, C., Liu, S., Sinding, M. H. S., Kuderna, L. F. K., Zhang, W., Fu, S., Garrett Vieira, F. J., Germonpré, M., Bocherens, H., Fedorov, S., Petersen, B., Sicheritz-Pontén, T., Marques-Bonet, T., Zhang, G., Jiang, H. & Gilbert, T., 1 Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

61 Citations (Scopus)

281 Downloads (Pure)

Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)

Haddad, N. J., Al-Nakeeb, K. A. A., Petersen, B., Dalén, L., Blom, N. & Sicheritz-Pontén, T., 1 Jan 2017, In: Mitochondrial DNA Part B: Resources. 2, 1, p. 139-140 2 p.

Research output: Contribution to journal › Journal article › Research › peer-review

11 Citations (Scopus)

Diversity, prevalence, and longitudinal occurrence of type II toxin-antitoxin systems of Pseudomonas aeruginosa infecting cystic fibrosis lungs

Andersen, S. B., Ghoul, M., Griffin, A. S., Petersen, B., Johansen, H. K. & Molin, S., 2017, In: Frontiers in Microbiology. 8, 12 p., 1180.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

23 Downloads (Pure)

Gene expression plasticity across hosts of an invasive scale insect species

Christodoulides, N., Van Dam, A. R., Peterson, D. A., Frandsen, R. J. N., Mortensen, U. H., Petersen, B., Rasmussen, S., Normark, B. B. & Hardy, N. B., May 2017, In: PLoS ONE. 12, 5

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

Genome sequence of Talaromyces atroroseus, which produces red colorants for the food industry

Thrane, U., Rasmussen, K. B., Petersen, B., Rasmussen, S., Sicheritz-Pontén, T. & Mortensen, U. H., 2017, In: Genome Announcements. 5, 9, 2 p.

Research output: Contribution to journal › Journal article › Research › peer-review

2 Citations (Scopus)

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X., & 39 othersSun, J., Cao, H., Ye, C., van Beusekom, J., Espeseth, T., Flindt, E., Friborg, R. M., Halager, A. E., Le Hellard, S., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Mailund, T., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, T., Krogh, A., Bolund, L., Sørensen, T. I. A., Pedersen, O. B., Gupta, R., Rasmussen, S., Besenbacher, S., Børglum, A. D., Wang, J., Eiberg, H. R. L., Kristiansen, K., Brunak, S. & Schierup, M. H., 3 Aug 2017, In: Nature. 548, 7665, p. 87-91 5 p.

Research output: Contribution to journal › Letter › peer-review

52 Citations (Scopus)

291 Downloads (Pure)

The first draft reference genome of the American mink (Neovison vison)

Cai, Z., Petersen, B., Sahana, G., Madsen, L. B., Larsen, K., Thomsen, B., Bendixen, C., Lund, M. S., Guldbrandtsen, B. & Panitz, F., 1 Dec 2017, In: Scientific Reports. 7, 1, 10 p., 14564 .

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

9 Downloads (Pure)

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

Gopalakrishnan, S., Samaniego Castruita, J. A., Sinding, M. H. S., Kuderna, L. F. K., Räikkönen, J., Petersen, B., Sicheritz-Pontén, T., Larson, G., Orlando, L. A. A., Marques-Bonet, T., Hansen, A. J., Dalén, L. & Gilbert, T., 2017, In: BMC Genomics. 18, 11 p., 495.

Research output: Contribution to journal › Journal article › Research › peer-review

27 Citations (Scopus)

135 Downloads (Pure)

2016

Plasmodium falciparum var genes expressed in children with severe malaria encode CIDRα1 domains

Jespersen, J. S., Wang, C. W., Mkumbaye, S. I., Minja, D. T., Petersen, B., Turner, L., Petersen, J. E., Lusingu, J. P., Theander, T. G. & Lavstsen, T., 1 Aug 2016, In: EMBO Molecular Medicine. 8, 8, p. 839-850 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

53 Citations (Scopus)

118 Downloads (Pure)

Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data

Rask, T. S., Petersen, B., Chen, D. S., Day, K. P. & Pedersen, A. G., 22 Apr 2016, In: BMC Bioinformatics. 17, p. 176

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

2015

Evolutionary genomics and conservation of the endangered Przewalski's horse

Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M., & 17 othersJagannathan, V., Feh, C., Greenblatt, C. L., Ludwig, A., Abramson, N. I., Zimmermann, W., Schafberg, R., Tikhonov, A., Sicheritz-Ponten, T., Willerslev, E., Marques-Bonet, T., Ryder, O. A., McCue, M., Rieder, S., Leeb, T., Slatkin, M. & Orlando, L. A. A., 2015, In: Current Biology. 25, 19, p. 2577-2583 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

94 Citations (Scopus)

Structural Conservation Despite Huge Sequence Diversity Allows EPCR Binding by the PfEMP1 Family Implicated in Severe Childhood Malaria

Lau, C. K. Y., Turner, L., Jespersen, J. S., Lowe, E. D., Petersen, B., Wang, C. W., Petersen, J. E. V., Lusingu, J., Theander, T. G., Lavstsen, T. & Higgins, M. K., 14 Jan 2015, In: Cell Host & Microbe. 17, 1, p. 118-29 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

98 Citations (Scopus)

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

Sanz, P. L., Der Sarkissian, C., Ermini, L., Schubert, M., Jónsson, H., Albrechtsen, A., Fumagalli, M., Yang, M. A., Gamba, C., Seguin-Orlando, A., Mortensen, C. D., Petersen, B., Hoover, C. A., Lorente-Galdos, B., Nedoluzhko, A., Boulygina, E., Tsygankova, S., Neuditschko, M., Jagannathan, V., Theves, C., & 20 othersAlfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Sicheritz-Pontén, T., Popov, R., Grigoriev, S., Alekseev, A. N., Rubin, E. M., McCue, M., Rieder, S., Leeb, T., Tikhonov, A., Crubézy, E., Slatkin, M., Marques-Bonet, T., Nielsen, R., Willerslev, E., Kantanen, J., Prokhortchouk, E. & Orlando, L. A. A., 15 Dec 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 50, p. E6889-E6897 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

69 Citations (Scopus)

Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients

Marvig, R. L., Dolce, D., Sommer, L. M., Petersen, B., Ciofu, O., Campana, S., Molin, S., Taccetti, G. & Johansen, H. K., Dec 2015, In: B M C Microbiology. 15, 13 p., 218.

Research output: Contribution to journal › Journal article › Research › peer-review

28 Citations (Scopus)

2014

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

Schubert, M., Jónsson, H., Chang, D., Der Sarkissian, C., Ermini, L., Ginolhac, A., Albrechtsen, A., Dupanloup, I., Foucal, A., Petersen, B., Fumagalli, M., Raghavan, M., Seguin-Orlando, A., Korneliussen, T. S., Velazquez, A. M. V., Stenderup, J., Hoover, C. A., Rubin, C-J., Alfarhan, A. H., Alquraishi, S. A., & 15 othersAl-Rasheid, K. A. S., MacHugh, D. E., Kalbfleisch, T., MacLeod, J. N., Rubin, E. M., Sicheritz-Ponten, T., Andersson, L., Hofreiter, M., Marques-Bonet, T., Gilbert, M. T. P., Nielsen, R., Excoffier, L., Willerslev, E., Shapiro, B. & Orlando, L. A. A., 30 Dec 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 52, p. E5661–E5669 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

162 Citations (Scopus)

Speciation with gene flow in equids despite extensive chromosomal plasticity

Jónsson, H., Schubert, M., Seguin-Orlando, A., Ginolhac, A., Petersen, L., Fumagalli, M., Albrechtsen, A., Petersen, B., Korneliussen, T. S., Mouatt, J. T. V., Lear, T., Myka, J. L., Lundquist, J., Miller, D. C., Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Stagegaard, J., Strauss, G., Bertelsen, M. F., & 6 othersSicheritz-Ponten, T., Antczak, D. F., Bailey, E., Nielsen, R., Willerslev, E. & Orlando, L. A. A., 30 Dec 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 52, p. 18655–18660 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

102 Citations (Scopus)

Whole-genome analyses resolve early branches in the tree of life of modern birds

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G., & 85 othersBoussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Terkelsen, K. M., Schierup, M. H., Lindow, B. E. K., Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, M. F., Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Schneider, M. P. C., Prosdocimi, F., Samaniego Castruita, J. A., Velazquez, A. M. V., Alfaro Nuñez, L. A., Campos, P., Petersen, B., Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldså, J., Orlando, L. A. A., Barker, F. K., Jønsson, K. A., Johnson, W., Koepfli, K. P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, C., Willerslev, E., Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M. T. P. & Zhang, G., 2014, In: Science. 346, 6215, p. 1320-1331 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

958 Citations (Scopus)

2013

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J., & 36 othersDolocan, A., Stenderup, J., Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, A., Gilbert, T., Kjær, K. H., Sicheritz-Pontén, T., Jensen, L. J., Olsen, J. V., Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, E., 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

Research output: Contribution to journal › Letter › peer-review

454 Citations (Scopus)

2010

NetTurnP - Neural Network Prediction of Beta-turns by Use of Evolutionary information and predicted Protein Sequence Features

Petersen, B., Lundegaard, C. & Petersen, T. N., 2010, In: PLoS ONE. 5, 11, 9 p., e15079.

Research output: Contribution to journal › Journal article › Research › peer-review

62 Citations (Scopus)

2009

A generic method for assignment of reliability scores applied to solvent accessibility predictions

Petersen, B., Petersen, T. N., Andersen, P., Nielsen, M. & Lundegaard, C., 2009, In: BMC Structural Biology. 9, 10 p., 51.

Research output: Contribution to journal › Journal article › Research › peer-review

454 Citations (Scopus)

4 Downloads (Pure)

Bent Petersen

Research output

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