MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Alba Rey-Iglesia; Shyam Gopalakrishan; Christian Carøe; David E. Alquezar-Planas; Anne Ahlmann Nielsen; Timo Röder; Lene Bruhn Pedersen; Christina Næsborg-Nielsen; Mikkel-Holger S. Sinding; Martin Fredensborg Rath; Zhipeng Li; Bent Petersen; M Thomas P Gilbert; Michael Bunce; Tobias Mourier; Anders Johannes Hansen

doi:10.1111/1755-0998.12984

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Alba Rey-Iglesia, Shyam Gopalakrishan, Christian Carøe, David E. Alquezar-Planas, Anne Ahlmann Nielsen, Timo Röder, Lene Bruhn Pedersen, Christina Næsborg-Nielsen, Mikkel-Holger S. Sinding, Martin Fredensborg Rath, Zhipeng Li, Bent Petersen, M Thomas P Gilbert, Michael Bunce, Tobias Mourier, Anders Johannes Hansen

Molecular Neuroscience

2 Citations (Scopus)

Original language	English
Journal	Molecular Ecology Resources
Volume	19
Issue number	2
Pages (from-to)	512-525
Number of pages	14
ISSN	1755-098X
DOIs	https://doi.org/10.1111/1755-0998.12984
Publication status	Published - Mar 2019

Keywords

genotyping
population genomics
reduced representation library
SNP discovery
TE
transposable elements

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10.1111/1755-0998.12984

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Rey-Iglesia, A., Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Ahlmann Nielsen, A., Röder, T., Pedersen, L. B., Næsborg-Nielsen, C., Sinding, M.-H. S., Rath, M. F., Li, Z., Petersen, B., Gilbert, M. T. P., Bunce, M., Mourier, T., & Hansen, A. J. (2019). MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements. Molecular Ecology Resources, 19(2), 512-525. https://doi.org/10.1111/1755-0998.12984

Rey-Iglesia, A, Gopalakrishan, S, Carøe, C, Alquezar-Planas, DE, Ahlmann Nielsen, A, Röder, T, Pedersen, LB, Næsborg-Nielsen, C, Sinding, M-HS, Rath, MF, Li, Z, Petersen, B, Gilbert, MTP, Bunce, M, Mourier, T & Hansen, AJ 2019, 'MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements', Molecular Ecology Resources, vol. 19, no. 2, pp. 512-525. https://doi.org/10.1111/1755-0998.12984

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title = "MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements",

keywords = "genotyping, population genomics, reduced representation library, SNP discovery, TE, transposable elements",

author = "Alba Rey-Iglesia and Shyam Gopalakrishan and Christian Car{\o}e and Alquezar-Planas, {David E.} and {Ahlmann Nielsen}, Anne and Timo R{\"o}der and Pedersen, {Lene Bruhn} and Christina N{\ae}sborg-Nielsen and Sinding, {Mikkel-Holger S.} and Rath, {Martin Fredensborg} and Zhipeng Li and Bent Petersen and Gilbert, {M Thomas P} and Michael Bunce and Tobias Mourier and Hansen, {Anders Johannes}",

year = "2019",

month = mar,

doi = "10.1111/1755-0998.12984",

language = "English",

volume = "19",

pages = "512--525",

journal = "Molecular Ecology Resources",

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T1 - MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

AU - Rey-Iglesia, Alba

AU - Gopalakrishan, Shyam

AU - Carøe, Christian

AU - Alquezar-Planas, David E.

AU - Ahlmann Nielsen, Anne

AU - Röder, Timo

AU - Pedersen, Lene Bruhn

AU - Næsborg-Nielsen, Christina

AU - Sinding, Mikkel-Holger S.

AU - Rath, Martin Fredensborg

AU - Li, Zhipeng

AU - Petersen, Bent

AU - Gilbert, M Thomas P

AU - Bunce, Michael

AU - Mourier, Tobias

AU - Hansen, Anders Johannes

PY - 2019/3

Y1 - 2019/3

KW - genotyping

KW - population genomics

KW - reduced representation library

KW - SNP discovery

KW - TE

KW - transposable elements

U2 - 10.1111/1755-0998.12984

DO - 10.1111/1755-0998.12984

M3 - Journal article

C2 - 30575257

SN - 1755-098X

VL - 19

SP - 512

EP - 525

JO - Molecular Ecology Resources

JF - Molecular Ecology Resources

IS - 2

ER -

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Keywords

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