Research output per year
Research output per year
Personal profile
Short presentation
Primary fields of research
My research focus is sequencing methods for the study of DNA. This technique is often referred to as next generation sequencing (NGS), second generation sequencing (SGS), massively parallel sequencing (MPS) or high throughput sequencing (HTS).
Within genetics, this technique allows investigating the details and alterations in DNA and the information it can provide. I have further specialised in the field of epigenetics investigating the small changes in the expression of the DNA.
I have, from previous research projects, great experience with working with minute amounts of DNA or RNA accompanied with greater quantities of DNA or RNA outside target. From that I have several years of experience with molecular capture methods where we are able to fish out the very small quantities of target DNA and RNA.
Keywords:
Genetics, epigenetics, NGS, DNA, RNA, forensics, schizophrenia, methylation patterns, sequencing, forensic genetics, schizophrenic disorder
CV
Previous position
|
Title |
Post.doc |
|
Subject |
Identification of mammals and various viral diseases from blood feeding leeches collected in the rainforest in Southeast Asia using target enrichment capture and NGS |
|
Location |
Junior Research Group: Southeast Asian Biodiversity and Biogeography, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany (collaboration with University of Copenhagen) |
|
Employer |
Dr. Andreas Wilting |
|
Time frame |
August 2013 – September 2014 |
Higher education
|
Title |
PhD. Candidate |
|
Title of PhD. thesis |
Molecular techniques for characterisation of pathogens: target enrichment, second generation sequencing and mass spectrometry |
|
Location |
Centre for GeoGenetics, University of Copenhagen, Denmark |
|
Supervisors |
Prof. M. Thomas P. Gilbert and Prof. Lars Peter Nielsen |
|
Time frame |
June 2010 – June 2013 (Defended October 4th 2013). |
|
Title |
Visiting PhD. candidate |
|
Subject |
Capture of herpesvirus from various types of tissue |
|
Location |
Department of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany. |
|
Supervisors |
Prof. Alex D. Greenwood |
|
Time frame |
November 2012 – March 2013 |
|
Title |
Master of Science in Engineering |
|
Subject |
Biotechnology with specialisation in medical microbiology |
|
Location |
Technical University of Denmark (DTU), Denmark |
|
Time frame |
January 2008 – April 2010 |
|
Title |
Master of Science |
|
Subject |
Life Sciences |
|
Location |
Technical University of Delft, The Netherlands |
|
Time frame |
January 2009 – July 2009 |
|
Title |
Bachelor of Science in Engineering |
|
Subject |
Biotechnology |
|
Location |
Technical University of Denmark (DTU), Denmark |
|
Time frame |
September 2004 – January 2008 |
Courses
|
Title |
IonTorrent PGM™ Instrument Training |
|
Main focus |
A course giving hands on experience with the library and OneTouch template preparation for IonTorrent PGM together with a know-how on instrument operation and data evaluation. |
|
Location |
Life Technologies, Darmstadt, Germany |
|
Organiser |
Life Technologies, Nathalie Kefer and Elena Fenino. |
|
Time frame |
August 2013 |
|
Title |
Next Generation Sequencing Data Management |
|
Main focus |
Data analysis of Illumina output using de novo tools |
|
Location |
The Gulbenkian Training Programme in Bioinformatics, Oeiras, Portugal |
|
Organiser |
Pedro Fernandes |
|
Time frame |
May 2011 |
|
Title |
Workshop on Molecular Evolution |
|
Main focus |
Data analysis for preparing phylogenetic trees using data from next generation sequencing |
|
Location |
Czech Republic |
|
Organiser |
Michael Cummings |
|
Time frame |
January 2011 |
|
Title |
Writers Development |
|
Main focus |
Tools for getting better at the writing process in science |
|
Location |
University of Copenhagen, Denmark |
|
Organiser |
Sarah Haas |
|
Time frame |
December 2010 |
|
Title |
Introduction to University Pedagogy |
|
Main focus |
Tools for improving teaching at universities |
|
Location |
University of Copenhagen, Denmark |
|
Organiser |
Frederik V. Christensen |
|
Time frame |
October 2010 |
External positions
Leibniz Institute for Zoo and Wildlife Research
1 Aug 2013 → 31 Aug 2014
Keywords
- Faculty of Science
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Dive into the research topics where Marie-Louise Kampmann is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 6 Similar Profiles
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Hybridization capture using short PCR products enriches small genomes by Capturing Flanking Sequences (CapFlank)
Tsangaras, K., Wales, N., Sicheritz-Pontén, T., Rasmussen, S., Michaux, J., Ishida, Y., Morand, S., Kampmann, M-L., Gilbert, M. T. P. & Greenwood, A. D., 2 Oct 2014, In: PLoS ONE. 9, 10, 10 p., e109101.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparison of techniques for quantification of next-generation sequencing libraries
Hussing, C., Kampmann, M-L., Mogensen, H. S., Børsting, C. & Morling, N., 1 Dec 2015, In: Forensic Science International: Genetics. Supplement Series. 5, p. e276-e278 3 p.Research output: Contribution to journal › Conference article › Research › peer-review
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High-throughput sequencing of forensic genetic samples using punches of FTA cards with buccal swabs
Kampmann, M-L., Buchard, A., Børsting, C. & Morling, N., Sept 2016, In: BioTechniques. 61, 3, p. 149-151 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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ISO 17025 validation of a next-generation sequencing assay for relationship testing
Buchard, A., Kampmann, M-L., Poulsen, L., Børsting, C. & Morling, N., 1 Oct 2016, In: Electrophoresis. 37, 21, p. 2822-2831 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Leeches as a source of mammalian viral DNA and RNA - a study in medicinal leeches
Kampmann, M-L., Schnell, I. B., Jensen, R. H., Axtner, J., Pedersen, A. F. S., Hansen, A. J., Bertelsen, M. F., Greenwood, A. D., Gilbert, T. & Wilting, A., 1 Apr 2017, In: European Journal of Wildlife Research. 63, 6 p., 36.Research output: Contribution to journal › Letter › peer-review
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A simple method for the parallel deep sequencing of full influenza A genomes
Kampmann, M-L., Fordyce, S. L., Avila Arcos, M. D. C., Rasmussen, M., Willerslev, E., Nielsen, L. P. & Gilbert, T., Dec 2011, In: Journal of Virological Methods. 178, 1-2, p. 243-248 6 p.Research output: Contribution to journal › Letter › peer-review
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Non-invasive prenatal paternity testing using a standard forensic genetic massively parallel sequencing assay for amplification of human identification SNPs
Christiansen, S. L., Jakobsen, B., Børsting, C., Udengaard, H., Buchard, A., Kampmann, M-L., Grøndahl, M. L. & Morling, N., 1 Sept 2019, In: International Journal of Legal Medicine. 133, 5, p. 1361–1368Research output: Contribution to journal › Journal article › Research › peer-review
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Sequencing Library Preparation from Degraded Samples for Non-illumina Sequencing Platforms
Martins, R. F., Kampmann, M. L. & Förster, D. W., 2019, Ancient DNA: Methods and Protocols. Humana Press, p. 85-92 (Methods in Molecular Biology, Vol. 1963).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review