Leise Riber

Research output

Research output per year 2004 2010 2011 2016 2018 2020

• 27 Journal article
• 16 Poster
• 3 Review

Research output per year

Research output per year

Search results

• 2020

  Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments

  Cyriaque, V., Jacquiod, S. J. A., Riber, L., Abu Al-Soud, W., Gillan, D. C., Sørensen, S. J. & Wattiez, R., 15 Jan 2020, In: Journal of Hazardous Materials. 382, 10 p., 121173.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Rivers 100%
  • Sediments 99%
  • plasmid 98%
  • fluvial deposit 77%
  • Pollution 75%
  4 Citations (Scopus)
• 2019

  A Novel and Direct Metamobilome Approach improves the Detection of Larger-sized Circular Elements across Kingdoms

  Alanin, K. S., Joergensen, T. S., Browne, P. D., Petersen, B., Riber, L., Kot, W. P. & Hansen, L. H., 2019, (Submitted) In: bioRxiv. 761098.

  Research output: Contribution to journal › Journal article › Research

  • Interspersed Repetitive Sequences 100%
  • Plasmids 57%
  • DNA Transposable Elements 36%
  • Bacteriophages 28%
  • Gene Pool 21%
  1 Downloads (Pure)
• 2018

  An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

  Madsen, J. S., Hylling, O., Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, L., Vestergaard, G. A. & Sørensen, S. J., 1 Sept 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • bis(3',5')-cyclic diguanylic acid 100%
  • gene transfer 86%
  • Horizontal Gene Transfer 85%
  • plasmid 78%
  • horizontal gene transfer 73%
  10 Citations (Scopus)

• A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

  Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, L., Olsen, C. A., Arkin, I. T., Winther, J. R., Willemoës, M. & Lindorff-Larsen, K., 16 Oct 2018, In: Biochemistry. 57, 41, p. 5949-5956

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Protons 100%
  • Human Influenza 90%
  • Spiro Compounds 69%
  • Proton 63%
  • Rimantadine 54%
  8 Citations (Scopus)

• Countermeasures to survive excessive chromosome replication in Escherichia coli

  Charbon, G., Riber, L. & Løbner-Olesen, A., 1 Feb 2018, In: Current Genetics. 64, 1, p. 71-79 9 p.

  Research output: Contribution to journal › Review › peer-review

  • Chromosomes 100%
  • Escherichia coli 88%
  • Adenosine Diphosphate 62%
  • Mutation 53%
  • Cell Cycle 49%
  8 Citations (Scopus)

• Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments

  Pinilla-Redondo, R., Riber, L. & Sørensen, S. J., 1 Mar 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • gene transfer 100%
  • Horizontal Gene Transfer 99%
  • horizontal gene transfer 84%
  • reporter genes 75%
  • Reporter Genes 74%
  6 Citations (Scopus)

• HipA-Mediated Phosphorylation of SeqA Does not Affect Replication Initiation in Escherichia coli

  Riber, L., Koch, B. M., Kruse, L. R., Germain, E. & Løbner-Olesen, A., 2 Nov 2018, In: Frontiers in Microbiology. 9, p. 1-9 2637.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Serine 100%
  • Escherichia coli 72%
  • Phosphorylation 71%
  • Escherichia coli Proteins 31%
  • Aspartic Acid 26%
  32 Downloads (Pure)

• Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome

  Jacquiod, S. J. A., Cyriaque, V., Riber, L., Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, S. J., 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Sediments 100%
  • Microorganisms 97%
  • Microbiota 80%
  • Contamination 78%
  • Metals 70%
  48 Citations (Scopus)

• Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives

  Pinilla Redondo, R., Cyriaque, V., Jacquiod, S., Sørensen, S. J. & Riber, L., Sept 2018, In: Plasmid. 99, p. 56-67

  Research output: Contribution to journal › Review › peer-review

  • Horizontal Gene Transfer 100%
  • Microbiota 74%
  • Plasmids 60%
  • Interspersed Repetitive Sequences 26%
  • Host Specificity 23%
  21 Citations (Scopus)
• 2017

  Deciphering conjugative plasmid permissiveness in wastewater microbiomes

  Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, S. J. & Riber, L., Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Permissiveness 100%
  • Waste Water 84%
  • plasmid 79%
  • wastewater treatment 72%
  • Microbiota 64%
  34 Citations (Scopus)

• Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner

  Klümper, U., Dechesne, A., Riber, L., Brandt, K. K., Gülay, A., Sørensen, S. J. & Smets, B. F., 1 Jan 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • plasmid 100%
  • Permissiveness 94%
  • Metals 71%
  • Plasmids 66%
  • plasmids 62%
  51 Citations (Scopus)

• Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season

  Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, L. H., Springael, D., Smalla, K., Riber, L. & Sørensen, S. J., Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Pesticides 100%
  • Farms 70%
  • Wastewater 22%
  • Genes 19%
  • Proteobacteria 19%
  17 Citations (Scopus)
• 2016

  Diverse gene functions in a soil mobilome

  Luo, W., Xu, Z., Riber, L., Hansen, L. H. & Sørensen, S. J., 2016, In: Soil Biology & Biochemistry. 101, p. 175-183 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • soil function 100%
  • plasmid 85%
  • Soil 76%
  • Plasmids 57%
  • plasmids 53%
  15 Citations (Scopus)

• Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels

  Riber, L., Burmølle, M., Alm, M., Milani, S. M., Thomsen, P., Hansen, L. H. & Sørensen, S. J., 1 Sept 2016, In: Plasmid. 87-88, p. 72-78 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • cloflucarban 100%
  • Silicones 55%
  • Hydrogels 54%
  • Polymers 45%
  • Plasmids 41%
  9 Citations (Scopus)

• Multiple DNA binding proteins contribute to timing of chromosome replication in E. coli

  Riber, L., Frimodt-Møller, J., Charbon, G. & Løbner-Olesen, A., 28 Jun 2016, In: Frontiers in Molecular Biosciences. 3, 9 p., 29.

  Research output: Contribution to journal › Review › peer-review

  • DNA Replication Timing 100%
  • DNA-Binding Proteins 64%
  • Escherichia coli 40%
  • Adenosine Triphosphate 26%
  • Protein 23%
  20 Citations (Scopus)

  111 Downloads (Pure)

• Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer

  Madsen, J. S., Riber, L., Kot, W. P., Basfeld, A., Burmølle, M., Hansen, L. H. & Sørensen, S. J., Sept 2016, In: P L o S One. 11, 9, 19 p., e0162390.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Gene transfer 100%
  • Promoter 90%
  • Motility 88%
  • plasmid 71%
  • Phenotype 71%
  10 Citations (Scopus)

  94 Downloads (Pure)
• 2015

  Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

  Klümper, U., Riber, L., Dechesne, A., Sannazzaro, A. I., Hansen, L. H., Sørensen, S. J. & Smets, B. F., 17 Mar 2015, In: I S M E Journal. 9, p. 934-945 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • host range 100%
  • Host Specificity 82%
  • plasmid 80%
  • soil bacteria 73%
  • Soil 71%
  134 Citations (Scopus)

• Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law

  Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, S. J., Riber, L., Fickers, P. & Delvigne, F., 1 Aug 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Population Biological Variation 100%
  • Noise 74%
  • Flow Cytometry 62%
  • Bioreactors 32%
  • Genome 18%
  18 Citations (Scopus)
• 2014

  An improved method for including upper size range plasmids in metamobilomes

  Norman, A., Riber, L., Luo, W., Li, L., Hansen, L. H. & Sørensen, S. J., 2014, In: PLoS ONE. 9, 8, 12 p., e104405.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Amplification 100%
  • plasmid 99%
  • range size 82%
  • Plasmids 66%
  • Recovery 63%
  20 Citations (Scopus)

  1042 Downloads (Pure)

• Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

  Riber, L., Poulsen, P. H. B., Abu Al-Soud, W., Hansen, L. B. S., Bergmark, L., Brejnrod, A. D., Norman, A., Hansen, L. H., Magid, J. & Sørensen, S. J., 1 Oct 2014, In: F E M S Microbiology Ecology. 90, 1, p. 206-224 19 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Fertilizers 100%
  • antibiotic resistance 78%
  • organic wastes 78%
  • soil bacteria 71%
  • organic waste 70%
  42 Citations (Scopus)
• 2013

  Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

  Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J., & 2 othersHøiby, N. & Bjarnsholt, T., 22 Jul 2013, In: P L o S One. 8, 7, 17 p., e68484.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Achromobacter denitrificans 100%
  • Fibrosis 93%
  • Achromobacter xylosoxidans 93%
  • Antibiotics 85%
  • cystic fibrosis 79%
  50 Citations (Scopus)

  2657 Downloads (Pure)

• Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques

  Li, L., Abu Al-Soud, W., Bergmark, L., Riber, L., Hansen, L. H., Magid, J. & Sørensen, S. J., Oct 2013, In: Current Microbiology. 67, 4, p. 423-430 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Pseudomonas 100%
  • Soil 96%
  • High-Throughput Nucleotide Sequencing 21%
  • Culture Media 20%
  • Sewage 19%
  13 Citations (Scopus)
• 2012

  Design and synthesis of a functional self-replicating, broad host range cloning vector from bits and bytes

  Riber, L., Norman, A., Sørensen, S. J. & Hansen, L. H., 2012.

  Research output: Contribution to conference › Poster › Research

• Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid stability

  Riber, L., Burmølle, M., Milani, S. M., Alm, M., Thomsen, P., Hansen, L. H. & Sørensen, S. J., 2012.

  Research output: Contribution to conference › Poster › Research

• When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility

  Madsen, J. S., Riber, L., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2012.

  Research output: Contribution to conference › Poster › Research
• 2011

  Attachment of Salmonella spp. to pork meat

  Hansen, T., Riber, L., Lofstrom, C. & Hoorfar, J., 2011.

  Research output: Contribution to conference › Poster › Research

• Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

  Riber, L., Charbon, G., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2011.

  Research output: Contribution to conference › Poster › Research › peer-review

• Microarray-based genotyping of Salmonella: inter-laboratory evaluation of reproducibility and standardization potential

  Gronlund, H., Riber, L., Vigre, H., Lofstrom, C., Folling, L., Huehn, S., Malorny, B., Radstrom, P., Rudi, K. & Hoorfar, J., 1 Mar 2011, In: International Journal of Food Microbiology. 145, 1, p. S79-S85 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Salmonella 100%
  • standardization 98%
  • reproducibility 97%
  • genotyping 90%
  • Buffers 87%
  5 Citations (Scopus)

• Suppressors of DnaA^ATP imposed overinitiation in Escherichia coli

  Charbon, G., Riber, L., Cohen, M., Skovgaard, O., Fujimitsu, K., Katayama, T. & Løbner-Olesen, A., Feb 2011, In: Molecular Microbiology. 79, 4, p. 914-928 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Escherichia coli 100%
  • Genetic Suppression 99%
  • Adenosine Triphosphate 83%
  • Chromosomes 56%
  • Binding Sites 54%
  22 Citations (Scopus)
• 2010

  Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

  Riber, L., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2010.

  Research output: Contribution to conference › Poster › Research

• Characterization of hda suppressor mutants (hsm’s)

  Bjørn, L., Charbon, G., Skovgaard, O., Riber, L. & Olesen, A. L., 2010.

  Research output: Contribution to conference › Poster › Research

• Genomic rearrangements and mutations identified by next generation sequencing

  Skovgaard, O., Bak, M., Bjørn, L., Charbon, G., Riber, L. & Olesen, A. L., 2010.

  Research output: Contribution to conference › Poster › Research

• SeqA contributes to control the amount of DnaA molecules available for initiation of replication

  Charbon, G., Riber, L., Bjørn, L., Skovgaard, O. & Olesen, A. L., 2010.

  Research output: Contribution to conference › Poster › Research

• Towards standardization of microarray-based genotyping of Salmonella

  Lofstrom, C., Grønlund, H., Riber, L., Vigre, H., Folling, L., Huehn, S., Malorny, B., Rådstrom, P., Rudi, K. & Hoorfar, J., 2010.

  Research output: Contribution to conference › Poster › Research
• 2009

  Loss of Hda activity stimulates replication initiation from I-box, but not R4 mutant origins in Escherichia coli

  Riber, L., Fujimitsu, K., Katayama, T. & Løbner-Olesen, A., 1 Jan 2009, In: Molecular Microbiology. 71, 1, p. 107-22 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Adenosine Triphosphate 100%
  • Escherichia coli 90%
  • Binding Sites 49%
  • Adenosine Diphosphate 42%
  • Mutation 36%
  34 Citations (Scopus)

• Loss of Hda activity stimulates replication initiation from I-box, but not R4 mutant origins in Escherichia coli

  Riber, L., Fujimitsu, K., Katayama, T. & Lobner-Olesen, A., Jan 2009, In: Molecular Microbiology. 71, 1, p. 107-122

  Research output: Contribution to journal › Journal article › Research › peer-review

• Salmonella genes involved in attachment on carcass surface and pork meat contamination

  Riber, L., Lofstrom, C. & Hoorfar, J., 2009.

  Research output: Contribution to conference › Poster › Research
• 2008

  Genome rearrangements in E. coli identified by HTP sequencing

  Skovgaard, O., Bak, M., Riber, L., Olesen, A. L. & Tommerup, N., 2008.

  Research output: Contribution to conference › Poster › Research

• Salmonella genes involved in attachment on carcass surface and pork meat contamination

  Riber, L. & Hoorfar, J., 2008.

  Research output: Contribution to conference › Poster › Research
• 2006

  Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome

  Riber, L., Olsson, J. A., Jensen, R. B., Skovgaard, O., Dasgupta, S., Marinus, M. G. & Løbner-Olesen, A., 1 Aug 2006, In: Genes & Development. 20, 15, p. 2121-34 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Chromosomes 100%
  • Homeostasis 92%
  • Maintenance 88%
  • Escherichia coli 88%
  • Cell Cycle 66%
  56 Citations (Scopus)

• Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome

  Riber, L., Olsson, J. A., Jensen, R. B., Skovgaard, O., Dasgupta, S., Marinus, M. G. & Lobner-Olesen, A., 1 Aug 2006, In: Genes & Development. 20, 15, p. 2121-2134

  Research output: Contribution to journal › Journal article › Research › peer-review

• RIDA and autoregulation of the dnaA gene act in concert to ensure timely initiation of replication in Escherichia coli

  Riber, L., Olsson, J., Jensen, R. B., Skovgaard, O., Dasgupta, S., Marinus, M. & Olesen, A. L., 2006.

  Research output: Contribution to conference › Poster › Research
• 2005

  Coordinated replication and sequestration of oriC and dnaA are required for maintaining controlled once-per-cell-cycle initiation in Escherichia coli

  Riber, L. & Løbner-Olesen, A., 1 Aug 2005, In: Journal of Bacteriology. 187, 16, p. 5605-13 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Cell Cycle 100%
  • Escherichia coli 89%
  • Genes 51%
  • Proteins 46%
  • Chromosomes 33%
  31 Citations (Scopus)

• Coordinated replication and sequestration of oriC and dnaA are required for maintaining controlled once-per-cell-cycle initiation in Escherichia coli

  Riber, L. & Lobner-Olesen, A., Aug 2005, In: Journal of Bacteriology. 187, 16, p. 5605-5613

  Research output: Contribution to journal › Journal article › Research › peer-review

• Post initiation control of chromosome replication in E. coli

  Riber, L. & Olesen, A. L., 2005.

  Research output: Contribution to conference › Poster › Research
• 2004

  Limiting DNA replication in E. coli to once and only once per cell cycle

  Riber, L. & Olesen, A. L., 2004.

  Research output: Contribution to conference › Poster › Research