Kristine Bohmann

2019

Promises and pitfalls of using high-throughput sequencing for diet analysis

Alberdi, A., Aizpurua, O., Bohmann, K., Gopalakrishnan, S., Lynggaard, C., Nielsen, M. & Gilbert, M. T. P., Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

Research output: Contribution to journal › Review › peer-review

43 Citations (Scopus)

Skmer: assembly-free and alignment-free sample identification using genome skims

Sarmashghi, S., Bohmann, K., Gilbert, M. T. P., Bafna, V. & Mirarab, S., 13 Feb 2019, In: Genome Biology. 20

Research output: Contribution to journal › Journal article › Research › peer-review

17 Citations (Scopus)

22 Downloads (Pure)

Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

Drinkwater, R., Schnell, I. B., Bohmann, K., Bernard, H., Veron, G., Clare, E., Gilbert, M. T. P. & Rossiter, S. J., Jan 2019, In: Molecular Ecology Resources. 19, 1, p. 105-117

Research output: Contribution to journal › Journal article › Research › peer-review

12 Citations (Scopus)

32 Downloads (Pure)

2018

Assembly-free and alignment-free sample identification using genome skims

Sarmashghi, S., Bohmann, K., Gilbert, M. T. P., Bafna, V. & Mirarab, S., 1 Jan 2018, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10812, p. 276-277 2 p.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

Debugging diversity – a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool

Schnell, I. B., Bohmann, K., Schultze, S. E., Richter, S. R., Murray, D. C., Sinding, M. H. S., Bass, D., Cadle, J. E., Campbell, M. J., Dolch, R., Edwards, D. P., Gray, T. N. E., Hansen, T., Hoa, A. N. Q., Noer, C. L., Heise-Pavlov, S., Sander Pedersen, A. F., Ramamonjisoa, J. C., Siddall, M. E. & Tilker, A. & 7 others, Traeholt, C., Wilkinson, N., Woodcock, P., Yu, D. W., Bertelsen, M. F., Bunce, M. & Gilbert, M. T. P., 2018, In: Molecular Ecology Resources. 18, 6, p. 1282-1298 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

22 Citations (Scopus)

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

Zepeda Mendoza, M. L., Xiong, Z., Escalera-Zamudio, M., Runge, A. K. W., Thézé, J., Streicker, D., Frank, H. K., Loza-Rubio, E., Liu, S., Ryder, O. A., Castruita, J. A. S., Katzourakis, A., Pacheco, G. A., Taboada, B., Löber, U., Pybus, O. G., Li, Y., Rojas-Anaya, E., Bohmann, K. & Carmona Baez, A. & 9 others, Arias, C. F., Liu, S., Greenwood, A. D., Bertelsen, M. F., White, N. E., Bunce, M., Zhang, G., Sicheritz-Ponten, T. & Gilbert, T., 1 Apr 2018, In: Nature Ecology & Evolution. 2, 4, p. 659-668 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

47 Citations (Scopus)

138 Downloads (Pure)

Scrutinizing key steps for reliable metabarcoding of environmental samples

Alberdi, A., Aizpurua, O., Gilbert, M. T. P. & Bohmann, K., Jan 2018, In: Methods in Ecology and Evolution. 9, Special feature, p. 134-147 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

172 Citations (Scopus)

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

Bohmann, K., Gopalakrishnan, S., Nielsen, M., Nielsen, L. D. S. B., Jones, G., Streicker, D. G. & Gilbert, T., Sept 2018, In: Molecular Ecology Resources. 18, 5, p. 1050-1063 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

28 Citations (Scopus)

168 Downloads (Pure)

2017

Connecting Earth observation to high-throughput biodiversity data

Bush, A., Sollmann, R., Wilting, A., Bohmann, K., Cole, B., Balzter, H., Martius, C., Zlinszky, A., Calvignac-Spencer, S., Cobbold, C. A., Dawson, T. P., Emerson, B. C., Ferrier, S., Gilbert, T., Herold, M., Jones, L., Leendertz, F. H., Matthews, L., Millington, J. D. A. & Olson, J. R. & 11 others, Ovaskainen, O., Raffaelli, D., Reeve, R., Rödel, M.-O., Rodgers, T. W., Snape, S., Visseren-Hamakers, I., Vogler, A. P., White, P. C. L., Wooster, M. J. & Yu, D. W., 22 Jun 2017, In: Nature Ecology and Evolution. 1, 7, 0176.

Research output: Contribution to journal › Review › peer-review

88 Citations (Scopus)

Diet determined by next generation sequencing reveals pest consumption and opportunistic foraging by bats in macadamia orchards in South Africa

Taylor, P. J., Matamba, E., Steyn, J. N., Nangammbi, T., Zepeda Mendoza, M. L. & Bohmann, K., Dec 2017, In: Acta Chiropterologica. 19, 2, p. 239-254 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

2016

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses

Zepeda Mendoza, M. L., Bohmann, K., Baez, A. C. & Gilbert, T., 2016, In: BMC Research Notes. 9, 13 p., 255.

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

88 Downloads (Pure)

Do vertebrate gut metagenomes confer rapid ecological adaptation?

Alberdi, A., Aizpurua, O., Bohmann, K., Zepeda Mendoza, M. L. & Gilbert, T., 1 Sept 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

79 Citations (Scopus)

First record of Vespertilio murinus from the Arabian Peninsula

Monadjem, A., Joubert, C., Richards, L., Nielsen, I. B., Nielsen, M., Kjartansdóttir, K. R., Bohmann, K., Mourier, T. & Hansen, A. J., 2016, In: Vespertilio. 18, p. 79-89 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

2015

Ancient and modern environmental DNA

Pedersen, M. W., Overballe-Petersen, S., Ermini, L., Der Sarkissian, C., Haile, J. S., Hellström, A. M., Spens, J., Thomsen, P. F., Bohmann, K., Cappellini, E., Schnell, I. B., Wales, N., Carøe, C., Campos, P., Schmidt, A. M. Z., Gilbert, M. T. P., Hansen, A. J., Orlando, L. A. A. & Willerslev, E., 19 Jan 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 11 p., 20130383.

Research output: Contribution to journal › Review › peer-review

148 Citations (Scopus)

Bats, Blood-Feeders and Biodiversity: Illumina Metabarcoding in Dietary Studies

Bohmann, K., 2015, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen. 320 p.

Research output: Book/Report › Ph.D. thesis

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

Schnell, I. B., Bohmann, K. & Gilbert, M. T. P., Nov 2015, In: Molecular Ecology Resources. 15, 6, p. 1289-1303 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

202 Citations (Scopus)

2014

Environmental DNA for wildlife biology and biodiversity monitoring

Bohmann, K., Evans, A., Gilbert, M. T. P., Carvalho, G. R., Creer, S., Knapp, M., Yu, D. W. & de Bruyn, M., 2014, In: Trends in Ecology & Evolution. 29, 6, p. 358-367 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

488 Citations (Scopus)

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

Hope, P. R., Bohmann, K., Gilbert, M. T. P., Zepeda Mendoza, M. L., Razgour, O. & Jones, G., 9 May 2014, In: Frontiers in Zoology. 11, 15 p., 39.

Research output: Contribution to journal › Journal article › Research › peer-review

52 Citations (Scopus)

2857 Downloads (Pure)

2013

17 Citations (Scopus)

2012

Challenges & rewards of African research: Do insect-eating bats patrol sugarcane fields in Swaziland

Bohmann, K. & Noer, C. L., 2012, In: Bats. 30, 1, p. 2-5 4 p.

Research output: Contribution to journal › Journal article › Communication

Molossid bats in an African agro-ecosystem select sugarcane fields as foraging habitat

Noer, C. L., Dabelsteen, T., Bohmann, K. & Monadjem, A., Apr 2012, In: African Zoology. 47, 1, p. 1-11 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

25 Citations (Scopus)

2011

Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing

Bohmann, K., Monadjem, A., Noer, C. L., Rasmussen, M., Zeale, M. R. K., Clare, E., Jones, G., Willerslev, E. & Gilbert, M. T. P., 2011, In: PLoS ONE. 6, 6, p. e21441 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

146 Citations (Scopus)

124 Downloads (Pure)

Kristine Bohmann

Promises and pitfalls of using high-throughput sequencing for diet analysis

Skmer: assembly-free and alignment-free sample identification using genome skims

Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

Assembly-free and alignment-free sample identification using genome skims

Debugging diversity – a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

Scrutinizing key steps for reliable metabarcoding of environmental samples

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

Connecting Earth observation to high-throughput biodiversity data

Diet determined by next generation sequencing reveals pest consumption and opportunistic foraging by bats in macadamia orchards in South Africa

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses

Do vertebrate gut metagenomes confer rapid ecological adaptation?

First record of Vespertilio murinus from the Arabian Peninsula

Ancient and modern environmental DNA

Bats, Blood-Feeders and Biodiversity: Illumina Metabarcoding in Dietary Studies

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

Environmental DNA for wildlife biology and biodiversity monitoring

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

DNA detective work to solve riddles of conservation

Hunting leeches in the dense forests of Madagascar

When bugs reveal biodiversity

Challenges & rewards of African research: Do insect-eating bats patrol sugarcane fields in Swaziland

Molossid bats in an African agro-ecosystem select sugarcane fields as foraging habitat

Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing

Kristine Bohmann

Research output

Search results