Skmer: assembly-free and alignment-free sample identification using genome skims

Shahab Sarmashghi; Kristine Bohmann; M. Thomas P. Gilbert; Vineet Bafna; Siavash Mirarab

doi:10.1186/s13059-019-1632-4

Skmer: assembly-free and alignment-free sample identification using genome skims

Shahab Sarmashghi, Kristine Bohmann, M. Thomas P. Gilbert, Vineet Bafna, Siavash Mirarab

17 Citations (Scopus)

22 Downloads (Pure)

Original language	English
Journal	Genome Biology
Volume	20
ISSN	1474-760X
DOIs	https://doi.org/10.1186/s13059-019-1632-4
Publication status	Published - 13 Feb 2019

Keywords

Assembly-free
Alignment-free
DNA Barcoding
Genome skimming
DNA reference database
Second generation sequencing

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10.1186/s13059-019-1632-4Licence: CC BY

s13059-019-1632-4 (1)Final published version, 3.3 MBLicence: CC BY

Cite this

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title = "Skmer: assembly-free and alignment-free sample identification using genome skims",

keywords = "Assembly-free, Alignment-free, DNA Barcoding, Genome skimming, DNA reference database, Second generation sequencing",

author = "Shahab Sarmashghi and Kristine Bohmann and Gilbert, {M. Thomas P.} and Vineet Bafna and Siavash Mirarab",

year = "2019",

month = feb,

day = "13",

doi = "10.1186/s13059-019-1632-4",

language = "English",

volume = "20",

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T1 - Skmer: assembly-free and alignment-free sample identification using genome skims

AU - Sarmashghi, Shahab

AU - Bohmann, Kristine

AU - Gilbert, M. Thomas P.

AU - Bafna, Vineet

AU - Mirarab, Siavash

PY - 2019/2/13

Y1 - 2019/2/13

KW - Assembly-free

KW - Alignment-free

KW - DNA Barcoding

KW - Genome skimming

KW - DNA reference database

KW - Second generation sequencing

U2 - 10.1186/s13059-019-1632-4

DO - 10.1186/s13059-019-1632-4

M3 - Journal article

C2 - 30760303

SN - 1474-760X

VL - 20

JO - Genome Biology

JF - Genome Biology

ER -

Skmer: assembly-free and alignment-free sample identification using genome skims

Keywords

Access to Document

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Cite this