Microbiology

2012

Ecology and photobiology of chlorophyll d-containing cyanobacteria

Kühl, M., Behrendt, L., Trampe, E. C. L., Sørensen, S. J., Chen, M., Qvortrup, K. & Larkum, AWD., 2012.

Research output: Contribution to conference › Conference abstract for conference › Research

Ecology and photobiology of chlorophyll d-containing cyanobacteria

Kühl, M., Behrendt, L., Trampe, E. C. L., Sørensen, S. J., Chen, M., Qvortrup, K. & Larkum, A. W. D., 2012.

Research output: Contribution to conference › Poster › Research

Enzymatic oxalic acid regulation correlated with wood degradation in four brown-rot fungi

Hastrup, A. C. S., Green, F., Lebow, P. K. & Jensen, B., Nov 2012, In: International Biodeterioration and Biodegradation. 75, p. 109-114 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

21 Citations (Scopus)

Extreme emission of n₂o from tropical wetland soil (pantanal, South America)

Møller, L. L. H., Nielsen, L. P., Revsbech, N. P., Priemé, A., Elberling, B., Enrich-Prast, A. & Kühl, M., 2012, In: Frontiers in Microbiology. 3, p. 1-13 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

2651 Downloads (Pure)

Extreme emission of N₂O from tropical wetland soil (Pantanal, South America)

Møller, L. L. H., Nielsen, L. P., Revsbech, N. P., Priemé, A., Elberling, B., Enrich-Prast, A. & Kühl, M., 2012, In: Frontiers in Microbiology. 3, 13 p., 433.

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

150 Downloads (Pure)

Fitness cost: a bacteriological explanation for the demise of the first international methicillin-resistant Staphylococcus aureus epidemic

Nielsen, K. L., Pedersen, T. M., Udekwu, K. I., Petersen, A., Skov, R. L., Hansen, L. H., Hughes, D. & Frimodt-Moller, N., Jun 2012, In: Journal of Antimicrobial Chemotherapy. 67, 6, p. 1325-1332 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

32 Citations (Scopus)

Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse

Bendtsen, K. M. B., Krych, L., Sørensen, D. B., Pang, W., Nielsen, D. S., Josefsen, K., Hansen, L. H., Sørensen, S. J. & Hansen, A. J. K., 2 Oct 2012, In: P L o S One. 7, 10, 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

163 Citations (Scopus)

Heterogeneity in recombinant protein production

Schalén, M., Johanson, T., Neves Lundin, A. L., Sørensen, S. J. & Lantz, A. E., 2012, In: New Biotechnology. 29, Supplement, 0, p. S78 1 p.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

High robustness of soil bacteria and funghi to multifactorial climate change manipulations

Bergmark, L., Haugwitz-Hardenberg-Reventlow, M. S., Sørensen, S. J. & Priemé, A., 2012.

Research output: Contribution to conference › Conference abstract for conference › Research

Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential

Procópio, L., Alvarez, V. M., Jurelevicius, D. A., Hansen, L. H., Sørensen, S. J., Cardoso, J. S., Pádula, M., Leitao, Á. C., Seldin, L. & van Elsas, J. D., Feb 2012, In: Antonie van Leeuwenhoek: Journal of Microbiology. 101, 2, p. 289-302 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

24 Citations (Scopus)

305 Downloads (Pure)

Kin selection, quorum sensing and virulence in pathogenic bacteria

Rumbaugh, K. P., Trivedi, U., Watters, C., Burton-Chellew, M. N., Diggle, S. P. & West, S. A., 7 Sept 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1742, p. 3584-8 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

52 Citations (Scopus)

Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid stability

Riber, L., Burmølle, M., Milani, S. M., Alm, M., Thomsen, P., Hansen, L. H. & Sørensen, S. J., 2012.

Research output: Contribution to conference › Poster › Research

Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing

Li, L., Norman, A., Hansen, L. H. & Sørensen, S. J., Jul 2012, In: Clinical Microbiology and Infection. 18, Suppl. 4, p. 8-11 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

Metamorphosis in balanomorphan, pedunculated, and parasitic barnacles: a video-based analysis

Høeg, J. T., Maruzzo, D., Okano, K., Glenner, H. & Chan, B. K. K., Sept 2012, In: Integrative and Comparative Biology. 52, 3, p. 337-347 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

27 Citations (Scopus)

568 Downloads (Pure)

Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

Behrendt, L., Larkum, A. W. D., Trampe, E. C. L., Norman, A., Sørensen, S. J. & Kühl, M., Jun 2012, In: I S M E Journal. 6, p. 1222-1237 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

54 Citations (Scopus)

Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics

Cretoiu, M. S., Kielak, A. M., Abu Al-Soud, W., Sørensen, S. J. & van Elsas, J. D., Jun 2012, In: Applied Microbiology and Biotechnology. 94, 5, p. 1347-1358 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

31 Citations (Scopus)

Novel and conserved bacterial mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine

Kroer, N., Møller, A., Barkay, T., Hansen, M. A., Norman, A., Hansen, L. H. & Sørensen, S. J., 2012.

Research output: Contribution to conference › Poster › Research

Permissiveness of soil microbial communities toward receipt of mobile genetic elements

Musovic, S., Klümper, U., Neves Lundin, A. L., Sørensen, S. J. & Smets, B. F., 2012.

Research output: Contribution to conference › Conference abstract for conference › Research

Phage-host interaction in Lactococcus and Leuconostoc

Kot, W. P., 2012, Department of Food Science, University of Copenhagen. 187 p.

Research output: Book/Report › Ph.D. thesis

Physiological heterogeneities in microbial populations and implications for physical stress tolerance

Carlqvist, M., Lencastre Fernandes, R., Helmark, S., Heins, A-L., Neves Lundin, A. L., Sørensen, S. J., Gernaey, K. & Eliasson Lantz, A., 2012, In: Microbial Cell Factories. 11, 94, 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

44 Citations (Scopus)

524 Downloads (Pure)

Primary cilia and aberrant cell signaling in epithelial ovarian cancer

Egeberg, D. L., Lethan, M., Manguso, R., Schneider, L., Awan, A., Jørgensen, T. S., Byskov, A. G., Pedersen, L. B. & Christensen, S. T., 10 Aug 2012, In: Cilia. 1, 15, 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

48 Citations (Scopus)

1152 Downloads (Pure)

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F., Szczepanowski, R., Abu Al-Soud, W., Sørensen, S. J., Pühler, A. & Schlüter, A., 30 Apr 2012, In: Journal of Biotechnology. 158, 4, p. 248-258 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

155 Citations (Scopus)

Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure

Berg, J., Brandt, K. K., Abu Al-Soud, W., Holm, P. E., Hansen, L. H., Sørensen, S. J. & Nybroe, O., Oct 2012, In: Applied and Environmental Microbiology. 78, 20, p. 7438-7446 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

120 Citations (Scopus)

Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae

Burmølle, M., Norman, A., Sørensen, S. J. & Hansen, L. H., 23 Jul 2012, In: PLOS ONE. 7, 7, 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

29 Citations (Scopus)

980 Downloads (Pure)

Temporal trends in N₂O flux dynamics in a Danish wetland – effects of plant-mediated gas transport of N₂O and O₂following changes in water level and soil mineral-N availability

Jørgensen, C. J., Struwe, S. & Elberling, B., Jan 2012, In: Global Change Biology. 18, 1, p. 210-222 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

83 Citations (Scopus)

The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR

Masoud, W. M. H., Vogensen, F. K., Lillevang, S., Abu Al-Soud, W., Sørensen, S. J. & Jakobsen, M., 1 Feb 2012, In: International Journal of Food Microbiology. 153, 1-2, p. 192-202 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

92 Citations (Scopus)

The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review

Douglas, T. A., Loseto, L. L., Macdonald, R. W., Outridge, P., Dommergue, A., Poulain, A., Amyot, M., Barkay, T., Berg, T., Chételat, J., Constant, P., Evans, M., Ferrari, C., Gantner, N., Johnson, M. S., Kirk, J., Kroer, N., Larose, C., Lean, D., Nielsen, T. G., & 7 othersPoissant, L., Rognerud, S., Skov, H., Sørensen, S. J., Wang, F., Wilson, S. & Zdanowicz, C. M., 2012, In: Environmental Chemistry (Online). 9, 4, p. 321-355 35 p.

Research output: Contribution to journal › Review › peer-review

79 Citations (Scopus)

The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors

Leisner, J., Hansen, M. A., Larsen, M. H., Hansen, L., Ingmer, H. & Sørensen, S. J., 16 Jan 2012, In: International Journal of Food Microbiology. 152, 3, p. 107-115 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

29 Citations (Scopus)

The interconnection between biofilm formation and horizontal gene transfer

Madsen, J. S., Burmølle, M., Hansen, L. H. & Sørensen, S. J., Jul 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 183-195 13 p.

Research output: Contribution to journal › Review › peer-review

265 Citations (Scopus)

Up-scaling of water use efficiency from leaf to canopy as based on leaf gas exchange relationships and the modeled in-canopy light distribution

Linderson, M-L., Mikkelsen, T. N., Ibrom, A., Lindroth, A., Ro-Poulsen, H. & Pilegaard, K., 15 Jan 2012, In: Agricultural and Forest Meteorology. 152, p. 201-211 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility

Madsen, J. S., Riber, L., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2012.

Research output: Contribution to conference › Poster › Research

2011

An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain

Damkjær Bartels, M., Hansen, L. H., Boye, K., Sørensen, S. J. & Westh, H. T., 2011, In: P L o S One. 6, 1, p. e16193 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

35 Citations (Scopus)

1017 Downloads (Pure)

Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools

Delvigne, F., Brognaux, A., Gorret, N., Sørensen, S. J., Michel, C. & Thonart, P., Jul 2011, Biosensors - Emerging Materials and Applications. Serra, P. A. (ed.). Rijeka, Croatia: InTech, p. 601-630 30 p.

Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

Archaeal CRISPR-based immune systems: exchangeable functional modules

Garrett, R. A., Vestergaard, G. A. & Shah, S. A., Nov 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.

Research output: Contribution to journal › Review › peer-review

70 Citations (Scopus)

Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil

Holmsgaard, P. N., Norman, A., Hede, S. C., Poulsen, P. H. B., Al-Soud, W. A., Hansen, L. H. & Sørensen, S. J., Oct 2011, In: Soil Biology & Biochemistry. 43, 10, p. 2152-2159 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

35 Citations (Scopus)

Biofilms in soil

Burmølle, M., Kjøller, A. H. & Sørensen, S. J., 2011, Encyclopedia of agrophysics. Springer, p. 70-75 6 p. (Encyclopedia of Earth Sciences Series).

Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research › peer-review

24 Citations (Scopus)

Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing

Masoud, W. M. H., Takamiya, M. K. W., Vogensen, F. K., Lillevang, S., Abu Al-Soud, W., Sørensen, S. J. & Jakobsen, M., Mar 2011, In: International Dairy Journal. 21, 3, p. 142-148 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

126 Citations (Scopus)

Characterization of pIC13_78, a biofilm enabling plasmid

Madsen, J. S., Norman, A., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2011.

Research output: Contribution to conference › Poster › Research

Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing

Inceoglu, Ö., Abu Al-Soud, W., Salles, J. F., Semenov, A. V. & van Elsas, J. D., 1 Aug 2011, In: P L o S One. 6, 8, p. e23321 (1-10) 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

150 Citations (Scopus)

603 Downloads (Pure)

Comparison of aerobic and anaerobic [³H]leucine incorporation assays for determining pollution-induced bacterial community tolerance in copper-polluted, irrigated soils

Aaen, K. N., Holm, P. E., Priemé, A., Hung, N. N. & Brandt, K. K., Mar 2011, In: Environmental Toxicology and Chemistry. 30, 3, p. 588-595 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

8 Citations (Scopus)

Construction of biosensors to investigate physiological diversity in fermentation processes

Han, S., Lundin, L. & Sørensen, S. J., 2011.

Research output: Contribution to conference › Poster › Research

Deletion of the topoisomerase III gene in the hyperthermophilic archaeon Sulfolobus islandicus results in slow growth and defects in cell cycle control

Li, X., Guo, L., Deng, L., Feng, D., Ren, Y., Chu, Y., She, Q. & Huang, L., 20 Jun 2011, In: Journal of Genetics and Genomics. 38, 6, p. 253-9 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

11 Citations (Scopus)

Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0

Hansen, L. H., Bentzon-Tilia, M., Bentzon-Tilia, S., Norman, A., Rafty, L. & Sørensen, S. J., May 2011, In: P L o S One. 6, 5, 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

307 Downloads (Pure)

Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic

Møller, A., Barkay, T., Abu Al-Soud, W., Sørensen, S. J., Skov, H. & Kroer, N. A., 1 Mar 2011, In: F E M S Microbiology Ecology. 75, 3, p. 390-401 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

57 Citations (Scopus)

Effects of elevated atmospheric CO₂, prolonged summer drought and temperature increase on N₂O and CH₄ fluxes in a temperate heathland

Carter, M. S., Ambus, P. L., Albert, K. R., Larsen, K. S., Andersson, M., Priemé, A., van der Linden, L. & Beier, C., Aug 2011, In: Soil Biology & Biochemistry. 43, 8, p. 1660-1670 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

25 Citations (Scopus)

Effects of hot water extraction and fungal decay on wood crystalline cellulose structure

Howell, C., Hastrup, A. C. S., Jara, R., Larsen, F. H., Goodell, B. & Jellison, J., Oct 2011, In: Cellulose. 18, 5, p. 1179-1190 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

20 Citations (Scopus)

4 Downloads (Pure)

Endolithic chlorophyll d-containing phototrophs

Behrendt, L., Larkum, A. W. D., Norman, A., Qvortrup, K., Chen, M., Ralph, P., Sørensen, S. J., Trampe, E. C. L. & Kühl, M., Jun 2011, In: I S M E Journal. 5, 6, p. 1072-6 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

53 Citations (Scopus)

Experimental methods and modeling techniques for description of cell population heterogeneity

Lencastre Fernandes, R., Nierychlo, M., Lundin, L., Pedersen, A. E., Tellez, P. E. P., Dutta, A., Carlquist, M., Bolic, A., Schäpper, D., Brunetti, A. C., Helmark, S., Heins, A-L., Jensen, A. D., Nopens, I., Rottwitt, K., Szita, N., Elsas, J. D. V., Nielsen, P. H., Martinussen, J., Sørensen, S. J., & 2 othersEliasson Lantz, A. & Gernaey, K., Nov 2011, In: Biotechnology Advances. 29, 6, p. 575-599 25 p.

Research output: Contribution to journal › Journal article › Research › peer-review

80 Citations (Scopus)

Extrachromosomal replicons:

Sørensen, S. J., 2011, Lewin's GENES X. Lewin, B., Krebs, J. E., Goldstein, E. S., Kilpatrick, S. T. & Goldstein, E. S. (eds.). 10th ed ed. Sudbury, Mass. : Jones and Bartlett Publishers, p. 282-298 16 p. (Jones and Bartlett books in computer science).

Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

Fluoroquinolone resistance mechanisms in urinary tract pathogenic Escherichia coli isolated during rapidly increasing fluoroquinolone consumption in a low-use country

Christiansen, N., Nielsen, L., Jakobsen, L., Stegger, M., Hansen, L. H. & Frimodt-Moller, N., 1 Aug 2011, In: Microbial Drug Resistance. 17, 3, p. 395-406 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

17 Citations (Scopus)

Microbiology

Research output

Search results