The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

TY - JOUR

T1 - The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

AU - Havgaard, Jakob Hull

AU - Lyngsø, Rune B.

AU - Gorodkin, Jan

PY - 2005

Y1 - 2005

N2 - FOLDALIGN is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of FOLDALIGN. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. the web server can be accessed at http://foldalign.kvl.dk

AB - FOLDALIGN is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of FOLDALIGN. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. the web server can be accessed at http://foldalign.kvl.dk

U2 - 10.1093/nar/gki473

DO - 10.1093/nar/gki473

M3 - Journal article

C2 - 15980555

SN - 0305-1048

VL - 33

SP - W650-W653

JO - Nucleic Acids Research

JF - Nucleic Acids Research

ER -