Research output per year
Research output per year
Personal profile
Short presentation
Associate professor in Bioinformatics. My research area is ncRNA bioinformatics. This includes: Secondary structure prediction, structural ncRNA alignment, prediction of RNA-RNA interactions, and ncRNA genome annotation.
I primarely teach programming for beginners (Perl) and bioinformatics.
I am employed as a vip eventhough I am registered as tap in some systems.
Current research
My current project is about de novo methylation of DNA (epigenetik) and ncRNA on a grant from the Lundbeck foundation.
Teaching
- Bioinformatics
- ncRNA
- Programming
Keywords
- Faculty of Health and Medical Sciences
Fingerprint
Dive into the research topics where Jakob Hull Havgaard is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 6 Similar Profiles
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
-
Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities
Sundfeld, D., Teodoro, G., Havgaard, J. H., Gorodkin, J. & Melo, A. C. M. A., 25 May 2020, In: Concurrency Computation. e5468.Research output: Contribution to journal › Journal article › Research › peer-review
-
CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters
Alkan, F., Wenzel, A., Anthon, C., Havgaard, J. H. & Gorodkin, J., 2018, In: Genome Biology. 19, 13 p., 177.Research output: Contribution to journal › Journal article › Research › peer-review
-
Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots
Kato, Y., Gorodkin, J. & Havgaard, J. H., Dec 2017, In: BMC Genomics. 18, 1, 935.Research output: Contribution to journal › Journal article › Research › peer-review
-
Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia
Junge, A., Zandi, R., Havgaard, J. H., Gorodkin, J. & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
-
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment
Sundfeld, D., Havgaard, J. H., Gorodkin, J. & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
-
RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs
Miladi, M., Junge, A., Costa, F., Seemann, S. E., Havgaard, J. H., Gorodkin, J. & Backofen, R., 2017, In: Bioinformatics. 33, 14, p. 2089-2096 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
-
Adipocyte gene expression and DNA methylation patterns differ significantly between lean and obese pigs
Jacobsen, M. J., Havgaard, J. H., Mentzel, C. M. J., Sørensen, P. M., Pundhir, S., Anthon, C., Karlskov-Mortensen, P., Bruun, C. V. S., Cirera Salicio, S., Gorodkin, J., Jorgensen, C. B., Barrès, R. & Fredholm, M., 9 Nov 2016, In: Journal of Animal Science. 94, Supplement 4, p. 46-47 2 p., P2019.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
-
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment
Sundfeld, D., Havgaard, J. H., de Melo, A. C. M. A. & Gorodkin, J., 15 Apr 2016, In: Bioinformatics. 32, 8, p. 1238-1240 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
Activities
- 3 Organisation of and participation in conference
-
Annual International Conference on Intelligent Systems for Molecular Biology
Jakob Hull Havgaard (Participant)
21 Jul 2007 → 25 Jul 2007Activity: Participating in or organising an event types › Organisation of and participation in conference
-
European Conference on Computational Biology
Jakob Hull Havgaard (Participant)
21 Jul 2007 → 25 Jul 2007Activity: Participating in or organising an event types › Organisation of and participation in conference
-
TBI Winterseminar
Jakob Hull Havgaard (Participant)
18 Feb 2007 → 24 Feb 2007Activity: Participating in or organising an event types › Organisation of and participation in conference