Jonas Andreas Sibbesen

2018

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, J. A., Maretty, L., Krogh, A., Petersen, B., Sibbesen, J. A., Liu, S., Have, C. T., Bork-Jensen, J., Guo, X., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J. & Brunak, S., 1 Jul 2018, In: Nature Genetics. 50, p. 1054-1059 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, M. L., Danish Pan Genome Consortium, Brunak, S., Izarzugaza, J. M. G., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J., Eiberg, H. R. L. & Kristiansen, K., 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

Research output: Contribution to journal › Journal article › Research › peer-review

8 Citations (Scopus)

69 Downloads (Pure)

2017

Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Danish Pan Genome Consortium, Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Rasmussen, S., Kristiansen, K. & Brunak, S., Aug 2017, In: PLOS Genetics. 13, 8, p. e1006834

Research output: Contribution to journal › Journal article › Research › peer-review

15 Citations (Scopus)

Assembly and analysis of 100 full MHC haplotypes from the Danish population

Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y. & Xu, R. & 39 others, Ye, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., Beusekom, J. V., Espeseth, T., Flindt, E., Halager, A. E., Hellard, S. L., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, T., Bolund, L., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Gupta, R., Rasmussen, S., Børglum, A. D., Wang, J., Eiberg, H. R. L., Kristiansen, K., Brunak, S. & Schierup, M. H., Sept 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

150 Downloads (Pure)

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J. & Guo, X. & 39 others, Sun, J., Cao, H., Ye, C., van Beusekom, J., Espeseth, T., Flindt, E., Friborg, R. M., Halager, A. E., Le Hellard, S., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Mailund, T., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, T., Krogh, A., Bolund, L., Sørensen, T. I. A., Pedersen, O. B., Gupta, R., Rasmussen, S., Besenbacher, S., Børglum, A. D., Wang, J., Eiberg, H. R. L., Kristiansen, K., Brunak, S. & Schierup, M. H., 3 Aug 2017, In: Nature. 548, 7665, p. 87-91 5 p.

Research output: Contribution to journal › Letter › peer-review

52 Citations (Scopus)

291 Downloads (Pure)

2016

Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection

Dialdestoro, K., Sibbesen, J. A., Sørensen, L. M., Raghwani, J., Gall, A., Kellam, P., Pybus, O. G., Hein, J. & Jenkins, P. A., Apr 2016, In: Genetics (Print). 202, 4, p. 1449-1472 24 p.

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

Next-generation biology: sequencing and data analysis approaches for non-model organisms

Rodrigues da Fonseca, R. A., Albrechtsen, A., Themudo, G. E. C., Ramos Madrigal, J., Sibbesen, J. A., Sørensen, L. M., Zepeda Mendoza, M. L., Campos, P., Heller, R. & Pereira, R., 1 Dec 2016, In: Marine Genomics. 30, p. 3-13

Research output: Contribution to journal › Journal article › Research › peer-review

70 Citations (Scopus)

131 Downloads (Pure)

Probabilistic Transcriptome Assembly and Variant Graph Genotyping

Sibbesen, J. A., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 119 p.

Research output: Book/Report › Ph.D. thesis

RNA sequencing of trigeminal ganglia in Rattus Norvegicus after glyceryl trinitrate infusion with relevance to migraine

Pedersen, S. H., Sørensen, L. M., Ramachandran, R., Sibbesen, J. A., Yakimov, V., Christensen, R. E., Hansen, T. F., Krogh, A., Olesen, J. & Olesen, I. J., 1 May 2016, In: P L o S One. 11, 5, 13 p., e0155039.

Research output: Contribution to journal › Journal article › Research › peer-review

6 Citations (Scopus)

74 Downloads (Pure)

2014

Bayesian transcriptome assembly

Sørensen, L. M., Sibbesen, J. A. & Krogh, A., 31 Oct 2014, In: Genome Biology (Online Edition). 15, 10, 11 p., 501.

Research output: Contribution to journal › Journal article › Research › peer-review

23 Citations (Scopus)

1054 Downloads (Pure)

Jonas Andreas Sibbesen

Research output

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