Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection

Kevin Dialdestoro; Jonas Andreas Sibbesen; Lasse Maretty Sørensen; Jayna Raghwani; Astrid Gall; Paul Kellam; Oliver G. Pybus; Jotun Hein; Paul A. Jenkins

doi:10.1534/genetics.115.177931

Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection

Kevin Dialdestoro, Jonas Andreas Sibbesen, Lasse Maretty Sørensen, Jayna Raghwani, Astrid Gall, Paul Kellam, Oliver G. Pybus, Jotun Hein, Paul A. Jenkins

Computational and RNA Biology

9 Citations (Scopus)

Original language	English
Journal	Genetics (Print)
Volume	202
Issue number	4
Pages (from-to)	1449-1472
Number of pages	24
ISSN	0016-6731
DOIs	https://doi.org/10.1534/genetics.115.177931
Publication status	Published - Apr 2016

Keywords

coalescent
importance sampling
HIV evolution
conditional sampling distribution
recombination

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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title = "Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection",

keywords = "coalescent, importance sampling, HIV evolution, conditional sampling distribution, recombination",

author = "Kevin Dialdestoro and Sibbesen, {Jonas Andreas} and S{\o}rensen, {Lasse Maretty} and Jayna Raghwani and Astrid Gall and Paul Kellam and Pybus, {Oliver G.} and Jotun Hein and Jenkins, {Paul A.}",

year = "2016",

month = apr,

doi = "10.1534/genetics.115.177931",

language = "English",

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publisher = "The Genetics Society of America (GSA)",

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T1 - Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection

AU - Dialdestoro, Kevin

AU - Sibbesen, Jonas Andreas

AU - Sørensen, Lasse Maretty

AU - Raghwani, Jayna

AU - Gall, Astrid

AU - Kellam, Paul

AU - Pybus, Oliver G.

AU - Hein, Jotun

AU - Jenkins, Paul A.

PY - 2016/4

Y1 - 2016/4

KW - coalescent

KW - importance sampling

KW - HIV evolution

KW - conditional sampling distribution

KW - recombination

U2 - 10.1534/genetics.115.177931

DO - 10.1534/genetics.115.177931

M3 - Journal article

C2 - 26857628

SN - 0016-6731

VL - 202

SP - 1449

EP - 1472

JO - Genetics (Print)

JF - Genetics (Print)

IS - 4

ER -

Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection

Keywords

UN SDGs

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Cite this