Biomolecular Sciences

Search results

• 3x 1 µs all-atom MD trajectories; AMBER ff15ipq & SPC/Eb; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3991429, https://zenodo.org/record/3991429

  Dataset

• SAXS calculations for Refinement of 𝛼-synuclein ensembles against SAXS data: Comparison of force fields and methods

  Lindorff-Larsen, K. (Creator), Zenodo, 2021

  DOI: 10.5281/zenodo.4437444, https://zenodo.org/record/4437444

  Dataset

• FRETpredict

  Montepietra, D. (Creator), Tesei, G. (Creator), Martins, J. M. (Creator), Kunze, M. B. A. (Creator), Best, R. B. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.10371378, https://zenodo.org10371378

  Dataset

• Data analyses using FRETpredict

  Montepietra, D. (Creator), Tesei, G. (Creator), Best, R. B. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2024

  DOI: 10.5281/zenodo.10573638, https://zenodo.org/records/10573638

  Dataset

• Conformational ensembles of the human IDRome

  Tesei, G. (Creator), Trolle, A. I. (Creator), Jonsson, N. (Creator), Betz, J. (Creator), Knudsen, F. E. (Creator), Pesce, F. (Creator), Johansson, K. E. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.10251736, https://zenodo.org/records/10251736

  Dataset

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7749344, https://zenodo.org/records/7749344

  Dataset

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7727848, https://zenodo.org/record/7727848

  Dataset

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2024

  DOI: 10.5281/zenodo.13684962, https://zenodo.org/records/13684962

  Dataset

• Additional file 2 of A comprehensive map of human glucokinase variant activity

  Gersing, S. (Creator), Cagiada, M. (Creator), Gebbia, M. (Creator), Gjesing, A. P. (Creator), Coté, A. G. (Creator), Seesankar, G. (Creator), Li, R. (Creator), Tabet, D. (Creator), Weile, J. (Creator), Stein, A. (Creator), Gloyn, A. L. (Creator), Hansen, T. (Creator), Roth, F. P. (Creator), Lindorff-Larsen, K. (Creator) & Hartmann-Petersen, R. (Creator), figshare, 2023

  DOI: 10.6084/m9.figshare.22705955, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_A_comprehensive_map_of_human_glucokinase_variant_activity/22705955

  Dataset

• Characterizing glucokinase variant mechanisms using a multiplexed abundance assay

  Gersing, S. (Creator), Schulze, T. K. (Creator), Cagiada, M. (Creator), Stein, A. (Creator), Roth, F. P. (Creator), Lindorff-Larsen, K. (Creator) & Hartmann-Petersen, R. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.c.7185485.v1, https://springernature.figshare.com/collections/Characterizing_glucokinase_variant_mechanisms_using_a_multiplexed_abundance_assay/7185485/1

  Dataset

• Characterizing glucokinase variant mechanisms using a multiplexed abundance assay

  Gersing, S. (Creator), Schulze, T. K. (Creator), Cagiada, M. (Creator), Stein, A. (Creator), Roth, F. P. (Creator), Lindorff-Larsen, K. (Creator) & Hartmann-Petersen, R. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.c.7185485, https://springernature.figshare.com/collections/Characterizing_glucokinase_variant_mechanisms_using_a_multiplexed_abundance_assay/7185485

  Dataset

• Rotamer distributions and spectral densities for 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3987818, https://zenodo.org/record/3987818

  Dataset

• 5x 1 µs all-atom MD trajectories; AMBER ff99SB*-ILDN & TIP4P/2005; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3989057, https://zenodo.org/record/3989057

  Dataset

• 3x 5 µs all-atom MD trajectories; AMBER ff99SB*-ILDN & TIP4P/2005; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3989044, https://zenodo.org/record/3989044

  Dataset

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6901205, https://zenodo.org/record/6901205

  Dataset

• Ensembles for: Computing, Analyzing, and Comparing the Radius of Gyration and Hydrodynamic Radius in Conformational Ensembles of Intrinsically Disordered Proteins

  Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3964622, https://zenodo.org/record/3964622

  Dataset

• Supporting data for "Recalibration of protein interactions in Martini 3"

  Thomasen, F. E. (Creator), Skaalum, T. (Creator), Kumar, A. (Creator), Srinivasan, S. (Creator), Vanni, S. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.8010043, https://zenodo.org/records/8010043

  Dataset

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6815068, https://zenodo.org/record/6815068

  Dataset

• Trajectories from "A glutamine-based single ɑ-helix scaffold to target globular proteins" Escobedo et al. 2022

  Escobedo, A. (Creator), Piccirillo, J. (Creator), Aranda, J. (Creator), Diercks, T. (Creator), Mateos, B. (Creator), Garcia-Cabau, C. (Creator), Sánchez-Navarro, M. (Creator), Topal, B. (Creator), Biesaga, M. (Creator), Staby, L. (Creator), Kragelund, B. B. (Creator), García, J. (Creator), Millet, O. (Creator), Orozco, M. (Creator), Coles, M. (Creator), Crehuet, R. (Creator) & Salvatella, X. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.7270329, https://zenodo.org/records/7270329

  Dataset

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.7437501, https://zenodo.org/records/7437501

  Dataset

• A comprehensive map of human glucokinase variant activity

  Gersing, S. (Creator), Cagiada, M. (Creator), Gebbia, M. (Creator), Gjesing, A. P. (Creator), Coté, A. G. (Creator), Seesankar, G. (Creator), Li, R. (Creator), Tabet, D. (Creator), Weile, J. (Creator), Stein, A. (Creator), Gloyn, A. L. (Creator), Hansen, T. (Creator), Roth, F. P. (Creator), Lindorff-Larsen, K. (Creator) & Hartmann-Petersen, R. (Creator), figshare, 2023

  DOI: 10.6084/m9.figshare.c.6619076, https://springernature.figshare.com/collections/A_comprehensive_map_of_human_glucokinase_variant_activity/6619076

  Dataset

• Additional file 2 of Characterizing glucokinase variant mechanisms using a multiplexed abundance assay

  Gersing, S. (Creator), Schulze, T. K. (Creator), Cagiada, M. (Creator), Stein, A. (Creator), Roth, F. P. (Creator), Lindorff-Larsen, K. (Creator) & Hartmann-Petersen, R. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.26707496.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Characterizing_glucokinase_variant_mechanisms_using_a_multiplexed_abundance_assay/26707496/1

  Dataset

• Additional file 2 of Characterizing glucokinase variant mechanisms using a multiplexed abundance assay

  Gersing, S. (Creator), Schulze, T. K. (Creator), Cagiada, M. (Creator), Stein, A. (Creator), Roth, F. P. (Creator), Lindorff-Larsen, K. (Creator) & Hartmann-Petersen, R. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.26707496, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Characterizing_glucokinase_variant_mechanisms_using_a_multiplexed_abundance_assay/26707496

  Dataset