Lasse Vinner

Publikation

Publikationer pr. år 2003 2015 2016 2018 2019

• 21 Tidsskriftartikel
• 4 Letter

Publikationer pr. år

Publikationer pr. år

Søgeresultater

• 2019

  Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

  Asplund, M., Kjartansdóttir, K. R., Mollerup, S., Vinner, L., Fridholm, H., Herrera, J. A. R., Friis-Nielsen, J., Hansen, T. A., Jensen, R. H., Nielsen, I. B., Richter, S. R., Rey-Iglesia, A., Matey-Hernandez, M. L., Alquezar-Planas, D. E., Olsen, P. V. S., Sicheritz-Pontén, T., Willerslev, E., Lund, O., Brunak, S., Mourier, T., & 3 flereNielsen, L. P., Izarzugaza, J. M. G. & Hansen, A. J., okt. 2019, I: Clinical Microbiology and Infection. 25, 10, s. 1277-1285

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Metagenome 100%
  • Viral Structures 90%
  • Nucleic Acids 68%
  • Viruses 46%
  38 Citationer (Scopus)

  16 Downloads (Pure)

• High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach

  Mollerup, S., Asplund, M., Friis-Nielsen, J., Kjartansdóttir, K. R., Fridholm, H., Hansen, T. A., Herrera, J. A. R., Barnes, C. J., Jensen, R. H., Richter, S. R., Nielsen, I. B., Pietroni, C., Alquezar-Planas, D. E., Rey-Iglesia, A., Olsen, P. V. S., Rajpert-De Meyts, E., Groth-Pedersen, L., von Buchwald, C., Jensen, D. H., Gniadecki, R., & 20 flereHøgdall, E., Langhoff, J. L., Pete, I., Vereczkey, I., Baranyai, Z., Dybkaer, K., Johnsen, H. E., Steiniche, T., Hokland, P., Rosenberg, J., Baandrup, U., Sicheritz-Pontén, T., Willerslev, E., Brunak, S., Lund, O., Mourier, T., Vinner, L., Izarzugaza, J. M. G., Nielsen, L. P. & Hansen, A. J., 13 sep. 2019, I: The Journal of Infectious Diseases. 220, 8, s. 1312-1324

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Viruses 100%
  • Neoplasms 48%
  • Anelloviridae 45%
  • Parvovirus 32%
  • Herpesviridae 28%
  2 Citationer (Scopus)

  20 Downloads (Pure)

• The population history of northeastern Siberia since the Pleistocene

  et al., 13 jun. 2019, I: Nature. 570, s. 182–188

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Siberia 100%
  • Population 25%
  • North American Indians 19%
  • Population Dynamics 19%
  • North America 17%
  71 Citationer (Scopus)

  180 Downloads (Pure)
• 2018

  Ancient Biomolecules and Evolutionary Inference

  Cappellini, E., Prohaska, A., Racimo, F., Welker, F., Pedersen, M. W., Allentoft, M. E., Damgaard, P. D. B., Gutenbrunner, P., Dunne, J., Hammann, S., Roffet-Salque, M., Ilardo, M., Moreno Mayar, J. V., Wang, Y., Sikora, M., Vinner, L., Cox, J., Evershed, R. P. & Willerslev, E., 20 jun. 2018, I: Annual Review of Biochemistry. 87, 32 s., 36.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Lipid As 100%
  • Amino Acid Sequence 71%
  • Sampling 64%
  • Nucleotide 63%
  • Ancient DNA 62%
  29 Citationer (Scopus)

  181 Downloads (Pure)

• Ancient hepatitis B viruses from the Bronze Age to the Medieval period

  Mühlemann, B., Jones, T. C., Damgaard, P. D. B., Allentoft, M. E., Shevnina, I., Logvin, A., Usmanova, E., Panyushkina, I. P., Boldgiv, B., Bazartseren, T., Tashbaeva, K., Merz, V., Lau, N., Smrcka, V., Voyakin, D., Kitov, E., Epimakhov, A., Pokutta, D., Vicze, M., Price, T. D., & 14 flereMoiseyev, V., Hansen, A. J., Orlando, L. A. A., Rasmussen, S., Sikora, M., Vinner, L., Osterhaus, A. D. M. E., Smith, D. J., Glebe, D., Fouchier, R. A. M., Drosten, C., Sjögren, K-G., Kristiansen, K. & Willerslev, E., 17 maj 2018, I: Nature. 557, 7705, s. 418-423 6 s.

  Publikation: Bidrag til tidsskrift › Letter › peer review

  • Hepatitis B virus 100%
  • Genotype 49%
  • Human Migration 18%
  • Genome 15%
  • Hominidae 15%
  73 Citationer (Scopus)

• Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans

  Mühlemann, B., Margaryan, A., Damgaard, P. D. B., Allentoft, M. E., Vinner, L., Hansen, A. J., Weber, A., Bazaliiskii, V. I., Molak, M., Arneborg, J., Bogdanowicz, W., Falys, C., Sablin, M., Smrcka, V., Sten, S., Tashbaeva, K., Lynnerup, N., Sikora, M., Smith, D. J., Fouchier, R. A. M., & 5 flereDrosten, C., Sjögren, K-G., Kristiansen, K., Willerslev, E. & Jones, T. C., 17 jul. 2018, I: Proceedings of the National Academy of Sciences of the United States of America. 115, 29, s. 7557-7562 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Human Parvovirus B19 100%
  • Genotype 48%
  • Greenland 17%
  • Erythema Infectiosum 16%
  • Genome 15%
  25 Citationer (Scopus)

• Early human dispersals within the Americas

  Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Allentoft, M. E., Vimala, T., Racimo, F., Rasmussen, S., Margaryan, A., Iraeta Orbegozo, M., Mylopotamitaki, D., Alexandersen, V., Primeau, C., Gregersen, K., Hansen, K. L., Lynnerup, N., Kjær, K., Schroeder, H., Malaspinas, A. S., Sikora, M., & 2 flereNielsen, R. & Willerslev, E., 7 dec. 2018, I: Science (New York, N.Y.). 362, 6419, s. 1, 1-11 12 s., eaav2621.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • South America 100%
  • North American Indians 99%
  • Population Dynamics 97%
  • Human Genome 85%
  92 Citationer (Scopus)

• Single-tube library preparation for degraded DNA

  Carøe, C., Gopalakrishnan, S., Vinner, L., Mak, S. S. T., Sinding, M. H. S., Samaniego, J. A., Wales, N., Sicheritz-Ponten, T. & Gilbert, M. T. P., 1 feb. 2018, I: Methods in Ecology and Evolution. 9, 2, s. 410-419 10 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • library 100%
  • DNA 88%
  • Canis lupus 39%
  • protocol 22%
  • protocols 22%
  85 Citationer (Scopus)

• Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

  Moreno Mayar, J. V., Potter, B. A., Vinner, L., Steinrucken, M., Rasmussen, S., Terhorst, J., Kamm, J. A., Albrechtsen, A., Malaspinas, A-S., Sikora, M., Reuther, J. D., Irish, J. D., Malhi, R. S., Orlando, L. A. A., Song, Y. S., Nielsen, R., Meltzer, D. J. & Willerslev, E., 11 jan. 2018, I: Nature Genetics. 553, 7687, s. 203-207 5 s.

  Publikation: Bidrag til tidsskrift › Letter › peer review

  • North American Indians 100%
  • Genome 55%
  • Gene Flow 44%
  • Population 32%
  • Ice Cover 11%
  111 Citationer (Scopus)

• The prehistoric peopling of Southeast Asia

  McColl, H., Racimo, F., Vinner, L., Demeter, F. P. M., Gakuhari, T., Moreno Mayar, J. V., van Driem, G., Gram Wilken, U., Seguin-Orlando, A., de la Fuente Castro, C. P., Wasef, S., Shoocongdej, R., Souksavatdy, V., Sayavongkhamdy, T., Saidin, M. M., Allentoft, M. E., Sato, T., Malaspinas, A-S., Aghakhanian, F. A., Korneliussen, T. S., & 46 flereProhaska, A., Margaryan, A., Damgaard, P. D. B., Kaewsutthi, S., Lertrit, P., Nguyen, T. M. H., Hung, H-C., Minh Tran, T., Nghia Truong, H., Nguyen, G. H., Shahidan, S., Wiradnyana, K., Matsumae, H., Shigehara, N., Yoneda, M., Ishida, H., Masuyama, T., Yamada, Y., Tajima, A., Shibata, H., Toyoda, A., Hanihara, T., Nakagome, S., Deviese, T., Bacon, A-M., Duringer, P., Ponche, J-L., Shackelford, L., Patole-Edoumba, E., Nguyen, A. T., Bellina-Pryce, B., Galipaud, J-C., Kinaston, R., Buckley, H., Pottier, C., Rasmussen, S., Higham, T., Foley, R. A., Lahr, M. M., Orlando, L., Sikora, M., Phipps, M. E., Oota, H., Higham, C., Lambert, D. M. & Willerslev, E., 6 jul. 2018, I: Science (New York, N.Y.). 361, 6397, s. 88-92 5 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Southeastern Asia 100%
  • Farmers 46%
  • Agriculture 45%
  • Vietnam 23%
  • Ecosystem 21%
  85 Citationer (Scopus)
• 2017

  Cutavirus in cutaneous malignant melanoma

  Mollerup, S., Fridholm, E. M. H., Vinner, L., Kjartansdóttir, K. R., Friis-Nielsen, J., Asplund, M., Romero, J. A. H., Steiniche, T., Mourier, T., Brunak, S., Willerslev, E., Izarzugaza, J. M. G., Hansen, A. J. & Nielsen, L. P., feb. 2017, I: Emerging Infectious Diseases . 23, 2, s. 363-365 3 s.

  Publikation: Bidrag til tidsskrift › Letter › peer review

  • Cutaneous Malignant Melanoma 100%
  • Skin Neoplasms 37%
  13 Citationer (Scopus)

  60 Downloads (Pure)
• 2016

  High diversity of picornaviruses in rats from different continents revealed by deep sequencing

  Hansen, T. A., Mollerup, S., Nam-phuong Nguyen, White, N. E., Coghlan, M., Alquezar Planas, D. E., Joshi, T., Jensen, R. H., Fridholm, E. M. H., Kjartansdóttir, K. R., Mourier, T., Warnow, T., Belsham, G. J., Bunce, M., Willerslev, E., Nielsen, L. P., Vinner, L. & Hansen, A. J., 2016, I: Emerging Microbes & Infections. 5, 8 s., e90.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Picornaviridae 100%
  • Rattus norvegicus 86%
  • high-throughput nucleotide sequencing 84%
  • High-Throughput Nucleotide Sequencing 68%
  • Zoonoses 57%
  11 Citationer (Scopus)

  89 Downloads (Pure)

• Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers

  Friis-Nielsen, J., Kjartansdóttir, K. R., Mollerup, S., Asplund, M., Mourier, T., Jensen, R. H., Hansen, T. A., Rey de la Iglesia, A., Richter, S. R., Nielsen, I. B., Alquezar Planas, D. E., Olsen, P. V. S., Vinner, L., Fridholm, E. M. H., Nielsen, L. P., Willerslev, E., Sicheritz-Pontén, T., Lund, O., Hansen, A. J., Izarzugaza, J. M. G., & 1 flereBrunak, S., 1 feb. 2016, I: Viruses. 8, 2, 16 s., 53.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Workflow 100%
  • Cluster Analysis 81%
  • Viruses 60%
  • Neoplasms 58%
  • Databases 54%
  8 Citationer (Scopus)

  114 Downloads (Pure)

• Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next-generation sequencing

  Mollerup, S., Friis-Nielsen, J., Vinner, L., Hansen, T. A., Richter, S. R., Fridholm, E. M. H., Herrera, J. A. R., Lund, O., Brunak, S., Izarzugaza, J. M. G., Mourier, T., Nielsen, L. P. & Hansen, A. J., apr. 2016, I: Journal of Clinical Microbiology. 54, 4, s. 980-987 8 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Propionibacterium acnes 100%
  • Firearms 86%
  • High-Throughput Nucleotide Sequencing 72%
  • Propionibacterium 38%
  • Bacteria 34%
  46 Citationer (Scopus)

  90 Downloads (Pure)

• Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms

  Harms, K., Lunnan, A., Hülter, N., Mourier, T., Vinner, L., Andam, C. P., Marttinen, P., Fridholm, E. M. H., Hansen, A. J., Hanage, W. P., Nielsen, K. M., Willerslev, E. & Johnsen, P. J., 27 dec. 2016, I: National Academy of Sciences. Proceedings. 113, 52, s. 15066-15071 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Genetic Recombination 100%
  • DNA 77%
  • Genome Components 57%
  • Horizontal Gene Transfer 45%
  • Acinetobacter 43%
  5 Citationer (Scopus)
• 2015

  A common genetic origin for early farmers from Mediterranean Cardial and Central European LBK cultures

  Olalde, I., Schroeder, H., Sandoval Velasco, M., Vinner, L., Lobón, I., Ramirez, O., Civit, S., Borja, P. G., Salazar-García, D. C., Talamo, S., Fullola, J. M., Oms, F. X., Pedro, M., Martínez, P., Sanz, M., Daura, J., Zilhão, J., Marquès-Bonet, T., Gilbert, M. T. P. & Lalueza-Fox, C., 2015, I: Molecular Biology and Evolution. 32, 12, s. 3132-3142 11 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Farmers 100%
  • Balkan Peninsula 90%
  • genome 80%
  • Balkans 68%
  • farmers 60%
  92 Citationer (Scopus)

  926 Downloads (Pure)

• Characterizing novel endogenous retroviruses from genetic variation inferred from short sequence reads

  Mourier, T., Mollerup, S., Vinner, L., Hansen, T. A., Kjartansdóttir, K. R., Frøslev, T. G., Boutrup, T. S., Nielsen, L. P., Willerslev, E. & Hansen, A. J., 23 okt. 2015, I: Scientific Reports. 5, 11 s., 15644 .

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Endogenous Retroviruses 100%
  • Retroviridae 79%
  • Genetic Variation 71%
  • Lions 67%
  • Perches 49%
  2 Citationer (Scopus)

  792 Downloads (Pure)

• Investigation of human cancers for retrovirus by low-stringency target enrichment and high-throughput sequencing

  Vinner, L., Mourier, T., Friis-Nielsen, J., Gniadecki, R., Dybkaer, K., Rosenberg, J., Langhoff, J. L., Flores Santa Cruz, D., Fonager, J., Izarzugaza, J. M. G., Gupta, R., Sicheritz-Ponten, T., Brunak, S., Willerslev, E., Nielsen, L. P. & Hansen, A. J., 19 aug. 2015, I: Scientific Reports. 5, 13 s., 13201.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Retroviridae 100%
  • Neoplasms 29%
  • Cutaneous T-Cell Lymphoma 23%
  • Firearms 21%
  • Viral DNA 20%
  26 Citationer (Scopus)

  119 Downloads (Pure)

• Population genomics of bronze age Eurasia

  Allentoft, M. E., Sikora, M., Sjogren, K-G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P. D. B., Schroeder, H., Ahlstrom, T., Vinner, L., Malaspinas, A. S., Margaryan, A., Higham, T., Chivall, D., Lynnerup, N., Harvig, L. L., Baron, J., Della Casa, P., Dabrowski, P., Duffy, P. R., & 46 flereEbel, A. V., Epimakhov, A., Frei, K., Furmanek, M., Gralak, T., Gromov, A., Gronkiewicz, S., Grupe, G., Hajdu, T., Jarysz, R., Khartanovich, V., Khokhlov, A., Kiss, V., Kolar, J., Kriiska, A., Lasak, I., Longhi, C., McGlynn, G., Merkevicius, A., Merkyte, I., Metspalu, M., Mkrtchyan, R., Moiseyev, V., Paja, L., Palfi, G., Pokutta, D., Pospieszny, L., Price, T. D., Saag, L., Sablin, M., Shishlina, N., Smrcka, V., Soenov, V. I., Szeverenyi, V., Toth, G., Trifanova, S. V., Varul, L., Vicze, M., Yepiskoposyan, L., Zhitenev, V., Orlando, L. A. A., Sicheritz-Ponten, T., Brunak, S., Nielsen, R., Kristiansen, K. & Willerslev, E., 10 jun. 2015, I: Nature Genetics. 522, 7555, s. 167-172 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • tolerance 100%
  • population migration 72%
  • cultural change 57%
  • coverage 41%
  • migration 38%
  617 Citationer (Scopus)

• Target-dependent enrichment of virions determines the reduction of high-throughput sequencing in virus discovery

  Jensen, R. H., Mollerup, S., Mourier, T., Hansen, T. A., Fridholm, E. M. H., Nielsen, L. P., Willerslev, E., Hansen, A. J. & Vinner, L., 8 apr. 2015, I: PLoS ONE. 10, 4, 18 s., e0122636.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • High Throughput 100%
  • Sequencing 85%
  • Viruses 84%
  • Virus 77%
  • virus 70%
  21 Citationer (Scopus)

  209 Downloads (Pure)

• Traces of ATCV-1 associated with laboratory component contamination

  Kjartansdóttir, K. R., Friis-Nielsen, J., Asplund, M., Mollerup, S., Mourier, T., Jensen, R. H., Hansen, T. A., Rey de la Iglesia, A., Richter, S. R., Alquezar Planas, D. E., Olsen, P. V. S., Vinner, L., Fridholm, E. M. H., Sicheritz-Pontén, T., Nielsen, L. P., Brunak, S., Willerslev, E., Izarzugaza, J. M. G. & Hansen, A. J., 3 mar. 2015, I: Proceedings of the National Academy of Sciences of the United States of America. 112, 9, s. E925-E926 2 s.

  Publikation: Bidrag til tidsskrift › Letter › peer review

  14 Citationer (Scopus)
• 2013

  Adjuvanted HLA-supertype restricted subdominant peptides induce new T-cell immunity during untreated HIV-1-infection

  Karlsson, I., Brandt, L., Vinner, L., Kromann, I., Andreasen, L. V., Andersen, P., Gerstoft, J., Kronborg, G. & Fomsgaard, A., feb. 2013, I: Clinical Immunology. 146, 2, s. 120-30 11 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • HIV Infections 100%
  • HIV-1 98%
  • Immunity 92%
  • Peptides 72%
  • T-Lymphocytes 69%
  32 Citationer (Scopus)
• 2009

  Induction of novel CD8+ T-cell responses during chronic untreated HIV-1 infection by immunization with subdominant cytotoxic T-lymphocyte epitopes

  Kloverpris, H., Karlsson, I., Bonde, J., Thorn, M., Vinner, L., Pedersen, A., Hentze, J., Andresen, B., Svane, I., Gerstoft, J., Kronborg, G., Fomsgaard, A., Kloverpris, H., Karlsson, I., Bonde, J., Thorn, M., Vinner, L., Pedersen, A. E., Hentze, J. L., Andresen, B. S., & 4 flereSvane, I. M., Gerstoft, J., Kronborg, G. & Fomsgaard, A., 2009, I: AIDS. 23, 11, s. 1329-40 11 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • T-Lymphocyte Epitopes 100%
  • Cytotoxic T-Lymphocytes 89%
  • HIV Infections 73%
  • HIV-1 72%
  • Epitopes 71%
  46 Citationer (Scopus)
• 2008

  Full-length characterization of A1/D intersubtype recombinant genomes from a therapy-induced HIV type 1 controller during acute infection and his noncontrolling partner

  Fomsgaard, A., Vinner, L., Therrien, D., Jorgensen, L. B., Nielsen, C., Mathiesen, L., Pedersen, C. & Corbet, S., 2008, I: AIDS Research and Human Retroviruses. 24, 3, s. 463-472 9 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  4 Citationer (Scopus)
• 2003

  Optimization and immune recognition of multiple novel conserved HLA-A2, human immunodeficiency virus type 1-specific CTL epitopes

  Corbet, S., Nielsen, H. V., Vinner, L., Lauemoller, S., Therrien, D., Tang, S., Kronborg, G., Mathiesen, L., Chaplin, P., Brunak, S., Buus, S. & Fomsgaard, A., 2003, I: Journal of General Virology. 84, 9, s. 2409-21 12 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • HLA-A2 Antigen 100%
  • HIV-1 63%
  • Epitopes 62%
  • Human Immunodeficiency Virus Proteins 23%
  • Vaccines 16%
  33 Citationer (Scopus)