Filipe Jorge Garrett Vieira

Publikation

Publikationer pr. år 2007 2016 2017 2018 2019

• 34 Tidsskriftartikel
• 2 Letter
• 1 Review

Publikationer pr. år

Publikationer pr. år

Søgeresultater

• 2019

  ngsLD: evaluating linkage disequilibrium using genotype likelihoods

  Fox, E. A., Wright, A. E., Fumagalli, M. & Vieira, F. G., 1 okt. 2019, I: Bioinformatics (Oxford, England). 35, 19, s. 3855-3856 2 s.

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  • Population Genetics 100%
  • Linkage Disequilibrium 94%
  • Genotype 78%
  • Bioinformatics 73%
  • Likelihood 58%
  15 Citationer (Scopus)

• Parallel adaptation of rabbit populations to myxoma virus

  Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G., & 8 flereSurridge, A. K., Vieira, F. G., McFadden, G., Nielsen, R., Gilbert, M. T. P., Esteves, P. J., Ferrand, N. & Jiggins, F. M., 22 mar. 2019, I: Science. 363, 6433

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  • Myxoma virus 100%
  • Rabbits 41%
  • Exome 35%
  • Viral Genes 34%
  • Pandemics 31%
  34 Citationer (Scopus)
• 2018

  Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull

  Bro-Jørgensen, M. H., Carøe, C., Vieira, F. G., Nestor, S., Hallström, A., Gregersen, K. M., Etting, V., Gilbert, M. T. P. & Sinding, M. H. S., 1 nov. 2018, I: Journal of Archaeological Science. 99, s. 47-54 8 s.

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  • Aurochs 100%
  • DNA Analysis 87%
  • Ancient DNA 80%
  • genetic test 78%
  • Bull 66%
  5 Citationer (Scopus)

• BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

  Hernandez, Y., Bernstein, R., Pagan, P., Vargas, L., McCaig, W., Ramrattan, G., Akther, S., Larracuente, A., Di, L., Vieira, F. J. G. & Qiu, W-G., 2 mar. 2018, I: B M C Bioinformatics. 19, 7 s., 76.

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  • Rapid Prototyping 100%
  • Bioinformatics 66%
  • Pipeline 63%
  • Rapid prototyping 59%
  • Computational Biology 51%
  5 Citationer (Scopus)

  55 Downloads (Pure)

• Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

  Kodama, M., Brinch-pedersen, H., Sharma, S., Holme, I. B., Joernsgaard, B., Dzhanfezova, T., Amby, D. B., Vieira, F. G., Liu, S. & Gilbert, M. T. P., 8 nov. 2018, I: BMC Genomics. 19, 1, s. 1-13 811.

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  • Daucus carota 100%
  • Anthocyanins 92%
  • RNA Sequence Analysis 76%
  • Transcription Factors 51%
  • Bony Callus 36%
  15 Citationer (Scopus)

  64 Downloads (Pure)

• Interspecific Gene Flow Shaped the Evolution of the Genus Canis

  Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K., & 7 flereHeide-Jørgensen, M. P., Petersen, B., Sicheritz-Ponten, T., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., 5 nov. 2018, I: Current Biology. 28, 21, s. 3441-3449

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  • Canis anthus 100%
  • Gene Flow 84%
  • Canis 78%
  • Canis lupus 74%
  • Cuon alpinus 66%
  33 Citationer (Scopus)

  69 Downloads (Pure)

• Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture

  Wright, A. E., Fumagalli, M., Cooney, C. R., Bloch, N. I., Vieira, F. G., Buechel, S. D., Kolm, N. & Mank, J. E., apr. 2018, I: Evolution Letters. 2, 2, s. 52-61 10 s.

  Publikation: Bidrag til tidsskrift › Letter › peer review

  • sexual conflict 100%
  • gene expression 62%
  • Negotiating 48%
  • gender 32%
  • Gene Expression 31%
  38 Downloads (Pure)

• No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

  Barnett, R., Sinding, M-H. S., Vieira, F. J. G., Mendoza, M. L. Z., Bonnet, M., Araldi, A., Kienast, I., Zambarda, A., Yamaguchi, N., Henschel, P. & Gilbert, T., 1 jun. 2018, I: Conservation Genetics. 19, 3, s. 611-618 8 s.

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  • Lions 100%
  • Gabon 99%
  • Panthera leo 95%
  • Felidae 73%
  • plateau 48%
  2 Citationer (Scopus)

  78 Downloads (Pure)

• Population genomics of grey wolves and wolf-like canids in North America

  Sinding, M. H. S., Gopalakrishan, S., Vieira, F. G., Samaniego Castruita, J. A., Raundrup, K., Heide Jørgensen, M. P., Meldgaard, M., Petersen, B., Sicheritz-Ponten, T., Mikkelsen, J. B., Marquard-Petersen, U., Dietz, R., Sonne, C., Dalén, L., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., nov. 2018, I: PLOS Genetics. 14, 11, 23 s., e1007745.

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  • canid 100%
  • Canis lupus 90%
  • Canidae 88%
  • Metagenomics 86%
  • wolves 84%
  12 Citationer (Scopus)

  38 Downloads (Pure)
• 2017

  Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

  Wang, H., Garrett Vieira, F. J., Crawford, J. E., Chu, C. & Nielsen, R., jun. 2017, I: Genome Research. 27, 6, s. 1029-1038 10 s.

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  • Gene Flow 100%
  • Oryza 80%
  • Domestication 14%
  • Pollen 5%
  • Population 5%
  40 Citationer (Scopus)

  167 Downloads (Pure)

• Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

  Sanchez Barreiro, F., Garrett Vieira, F. J., Martin, M. D., Haile, J. S., Gilbert, T. & Wales, N., 1 mar. 2017, I: Molecular Ecology Resources. 17, 2, s. 209-220 12 s.

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  • RNA Probe 100%
  • Ambrosia 93%
  • Ambrosia artemisiifolia 91%
  • RNA Probes 90%
  • RNA probes 89%
  12 Citationer (Scopus)

• Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

  Mak, S., Gopalakrishnan, S., Carøe, C., Geng, C., Liu, S., Sinding, M. H. S., Kuderna, L. F. K., Zhang, W., Fu, S., Garrett Vieira, F. J., Germonpré, M., Bocherens, H., Fedorov, S., Petersen, B., Sicheritz-Pontén, T., Marques-Bonet, T., Zhang, G., Jiang, H. & Gilbert, T., 1 aug. 2017, I: GigaScience. 6, 8, s. 1–13 13 s.

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  • DNA 100%
  • High-Throughput Nucleotide Sequencing 93%
  • Ancient DNA 62%
  • Libraries 34%
  • DNA Damage 33%
  61 Citationer (Scopus)

  281 Downloads (Pure)

• Genomic and proteomic identification of Late Holocene remains: setting baselines for Black Sea odontocetes

  Biard, V., Gol'din, P., Gladilina, E., Vishnyakova, K., McGrath, K., Garrett Vieira, F. J., Wales, N., Fontaine, M. C., Speller, C. & Olsen, M. T., okt. 2017, I: Journal of Archaeological Science: Reports. 15, s. 262-271 10 s.

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  • Late Holocene 100%
  • Proteomics 89%
  • Black Sea 72%
  • Sequencing 66%
  • conservation 38%
  3 Citationer (Scopus)

  8 Downloads (Pure)

• Unmatched DNA preservation prove arctic hare and sheep wool in Norse Greenlandic textile from “The Farm Beneath the Sand”

  Sinding, M. H. S., Vieira, F. G. & Smith, M. H., 1 aug. 2017, I: Journal of Archaeological Science: Reports. 14, s. 603-608 6 s.

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  • DNA Preservation 100%
  • Arctic 58%
  • Wool 55%
  • clothing 52%
  • Farm 48%
  4 Citationer (Scopus)
• 2016

  Estimating IBD tracts from low coverage NGS data

  Garrett Vieira, F. J., Albrechtsen, A. & Nielsen, R., 15 jul. 2016, I: Bioinformatics. 32, 14, s. 2096-2102 7 s.

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  • Bioinformatics 100%
  • Coverage 90%
  • Availability 64%
  • Uncertainty 57%
  • Genotype 53%
  16 Citationer (Scopus)

• Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

  Foote, A. D., Vijay, N., Avila Arcos, M. D. C., Baird, R. W., Durban, J. W., Fumagalli, M., Gibbs, R. A., Hanson, M. B., Korneliussen, T. S., Martin, M. D., Robertson, K. M., Sousa, V. C., Garrett Vieira, F. J., Vinař, T., Wade, P., Worley, K. C., Excoffier, L., Morin, P. A., Gilbert, T. & Wolf, J. B. W., 31 maj 2016, I: Nature Communications. 7, 12 s., 11693.

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  • Killer Whale 100%
  • Ecotype 91%
  • whales 78%
  • genome 68%
  • Ecosystem 58%
  113 Citationer (Scopus)

  110 Downloads (Pure)

• Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans

  Martin, M. D., Garrett Vieira, F. J., Ho, S. Y. W., Wales, N., Schubert, M., Seguin-Orlando, A., Ristaino, J. B. & Gilbert, M. T. P., 1 feb. 2016, I: Molecular Biology and Evolution. 33, 2, s. 478-491 14 s.

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  • Phytophthora infestans 100%
  • Phytophthora 93%
  • mandate 60%
  • potato 60%
  • provenance 52%
  28 Citationer (Scopus)

  104 Downloads (Pure)

• Genomic insights into the Ixodes scapularis tick vector of Lyme disease

  Gulia-Nuss, M., Nuss, A. B., Meyer, J. M., Sonenshine, D. E., Roe, R. M., Waterhouse, R. M., Sattelle, D. B., de la Fuente, J., Ribeiro, J. M., Megy, K., Thimmapuram, J., Miller, J. R., Walenz, B. P., Koren, S., Hostetler, J. B., Thiagarajan, M., Joardar, V. S., Hannick, L. I., Bidwell, S., Hammond, M. P., & 73 flereYoung, S., Zeng, Q., Abrudan, J. L., Almeida, F. C., Ayllón, N., Bhide, K., Bissinger, B. W., Bonzon-Kulichenko, E., Buckingham, S. D., Caffrey, D. R., Caimano, M. J., Croset, V., Driscoll, T., Gilbert, D., Gillespie, J. J., Giraldo-Calderón, G. I., Grabowski, J. M., Jiang, D., Khalil, S. M. S., Kim, D., Kocan, K. M., Koči, J., Kuhn, R. J., Kurtti, T. J., Lees, K., Lang, E. G., Kennedy, R. C., Kwon, H., Perera, R., Qi, Y., Radolf, J. D., Sakamoto, J. M., Sánchez-Gracia, A., Severo, M. S., Silverman, N., Šimo, L., Tojo, M., Tornador, C., Van Zee, J. P., Vázquez, J., Garrett Vieira, F. J., Villar, M., Wespiser, A. R., Yang, Y., Zhu, J., Arensburger, P., Pietrantonio, P. V., Barker, S. C., Shao, R., Zdobnov, E. M., Hauser, F., Grimmelikhuijzen, C., Park, Y., Rozas, J., Benton, R., Pedra, J. H. F., Nelson, D. R., Unger, M. F., Tubio, J. M. C., Tu, Z., Robertson, H. M., Shumway, M., Sutton, G., Wortman, J. R., Lawson, D., Wikel, S. K., Nene, V. M., Fraser, C. M., Collins, F. H., Birren, B., Nelson, K. E., Caler, E. & Hill, C. A., 9 feb. 2016, I: Nature Communications. 7, 13 s., 10507.

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  • Ixodes 100%
  • genome 94%
  • Parasitic 88%
  • Lyme Disease 88%
  • Ticks 84%
  247 Citationer (Scopus)

  182 Downloads (Pure)

• Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe

  Skovrind, M., Olsen, M. T., Garrett Vieira, F. J., Antunes Pacheco, G., Carl, H., Gilbert, T. & Møller, P. R., 1 feb. 2016, I: Ecology and Evolution. 6, 4, s. 1064-1074 11 s.

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  • Leuciscus idus 100%
  • Western European region 66%
  • population structure 64%
  • Western Europe 61%
  • genomics 59%
  12 Citationer (Scopus)

  85 Downloads (Pure)

• Improving the estimation of genetic distances from Next-Generation Sequencing data

  Garrett Vieira, F. J., Lassalle, F., Korneliussen, T. S. & Fumagalli, M., 1 jan. 2016, I: Biological Journal of the Linnean Society. 117, 1, s. 139-149 11 s.

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  • genetic distance 100%
  • genotype 87%
  • traditional technology 37%
  • evolutionary biology 35%
  • genetic structure 32%
  35 Citationer (Scopus)

• The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication

  Wang, H., Xu, X., Garrett Vieira, F. J., Xiao, Y., Li, Z., Wang, J., Nielsen, R. & Chu, C., 1 jul. 2016, I: Molecular Plant. 9, 7, s. 975-985 11 s.

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  • Domestication 100%
  • Inbreeding 89%
  • convergent evolution 78%
  • Oryza 75%
  • Genome-Wide Association Study 66%
  58 Citationer (Scopus)
• 2015

  Evolutionary genomics and conservation of the endangered Przewalski's horse

  Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M., & 17 flereJagannathan, V., Feh, C., Greenblatt, C. L., Ludwig, A., Abramson, N. I., Zimmermann, W., Schafberg, R., Tikhonov, A., Sicheritz-Ponten, T., Willerslev, E., Marques-Bonet, T., Ryder, O. A., McCue, M., Rieder, S., Leeb, T., Slatkin, M. & Orlando, L. A. A., 2015, I: Current Biology. 25, 19, s. 2577-2583 7 s.

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  • Equus przewalskii 100%
  • Genomics 63%
  • Horses 59%
  • Marker 54%
  • Disorder 53%
  94 Citationer (Scopus)

• The origin and evolution of maize in the Southwestern United States

  Rodrigues da Fonseca, R. A., Smith, B. D., Wales, N., Cappellini, E., Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, T. S., Garrett Vieira, F. J., Jakobsson, M., Arriaza, B., Willerslev, E., Nielsen, R., Hufford, M. B., Albrechtsen, A., Ross-Ibarra, J. & Gilbert, M. T. P., 8 jan. 2015, I: Nature Plants. 1, 5 s., 14003.

  Publikation: Bidrag til tidsskrift › Letter › peer review

  • Southwestern United States 100%
  • corn 46%
  • highlands 27%
  • cultural environment 25%
  • Zea 19%
  83 Citationer (Scopus)
• 2014

  Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families

  Librado, P., Garrett Vieira, F. J., Sánchez-Gracia, A., Kolokotronis, S. O. & Rozas, J., jun. 2014, I: Genome Biology and Evolution. 6, 6, s. 1454-1465 12 s.

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  • Phylogeny 100%
  • turnover 75%
  • gene 63%
  • family 60%
  • Mycobacterium 52%
  12 Citationer (Scopus)

• ngsTools : methods for population genetics analyses from next-generation sequencing data

  Fumagalli, M., Garrett Vieira, F. J., Linderoth, T. & Nielsen, R., 15 maj 2014, I: Bioinformatics. 30, 10, s. 1486-1487 2 s.

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  • Population Genetics 100%
  • Polymorphism 83%
  • Nucleotides 83%
  • Sequencing 80%
  • High-Throughput Nucleotide Sequencing 64%
  113 Citationer (Scopus)
• 2013

  Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation

  Garrett Vieira, F. J., Fumagalli, M., Albrechtsen, A. & Nielsen, R., nov. 2013, I: Genome Research. 23, s. 1852-1861 10 s.

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  • Inbreeding 100%
  • Gene Frequency 69%
  • High-Throughput Nucleotide Sequencing 67%
  • Genotype 50%
  • Life Cycle Stages 25%
  45 Citationer (Scopus)

• Quantifying population genetic differentiation from next-generation sequencing data

  Fumagalli, M., Garrett Vieira, F. J., Korneliussen, T. S., Linderoth, T., Huerta-Sánchez, E., Albrechtsen, A. & Nielsen, R., nov. 2013, I: Genetics. 195, 3, s. 979-992 14 s.

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  • Population Genetics 100%
  • High-Throughput Nucleotide Sequencing 78%
  • Genotype 33%
  • Bombyx 16%
  • Genetic Structures 15%
  108 Citationer (Scopus)
• 2012

  BadiRate: Estimating family turnover rates by likelihood-based methods

  Librado, P., Vieira, F. G. & Rozas, J., jan. 2012, I: Bioinformatics. 28, 2, s. 279-281 3 s., btr623.

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  • MicroRNA 100%
  • Gene 79%
  • Genes 77%
  • Likelihood 70%
  • Binding Site 57%
  68 Citationer (Scopus)

• Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses

  Vieira, F. G., Forêt, S., He, X., Rozas, J., Field, L. M. & Zhou, J. J., 27 aug. 2012, I: PLoS ONE. 7, 8, e43034.

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  • odorant-binding protein 100%
  • Carrier Proteins 89%
  • Wasps 84%
  • Nasonia vitripennis 82%
  • parasitoid 81%
  40 Citationer (Scopus)
• 2011

  Comparative genomics of the odorant-binding and chemosensory protein gene families across the arthropoda: Origin and evolutionary history of the chemosensory system

  Vieira, F. G. & Rozas, J., 2011, I: Genome Biology and Evolution. 3, 1, s. 476-490 15 s.

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  • odorant-binding protein 100%
  • Arthropoda 76%
  • odorant receptors 75%
  • Arthropods 72%
  • Genomics 57%
  265 Citationer (Scopus)
• 2010

  Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum

  Zhou, J. J., Vieira, F. G., He, X. L., Smadja, C., Liu, R., Rozas, J. & Field, L. M., mar. 2010, I: Insect Molecular Biology. 19, SUPPL. 2, s. 113-122 10 s.

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  • Pea Proteins 100%
  • odorant-binding protein 95%
  • Aphids 90%
  • Peas 76%
  • odorant receptors 71%
  138 Citationer (Scopus)

• Genome sequence of the pea aphid Acyrthosiphon pisum

  Richards, S., Gibbs, R. A., Gerardo, N. M., Moran, N., Nakabachi, A., Stern, D., Tagu, D., Wilson, A. C. C., Muzny, D., Kovar, C., Cree, A., Chacko, J., Chandrabose, M. N., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangian, S. N., Joshi, V., & 200 flereLewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Nazareth, L. V., Chavez, D., Davis, C., Lee, S. L., Patel, B. M., Pu, L. L., Bell, S. N., Johnson, A. J., Vattathil, S., Williams, R. L., Shigenobu, S., Dang, P. M., Morioka, M., Fukatsu, T., Kudo, T., Miyagishima, S. Y., Jiang, H., Worley, K. C., Legeai, F., Gauthier, J. P., Collin, O., Zhang, L., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Murphy, T., Pruitt, K., Sapojnikov, V., Souvorov, A., Thibaud-Nissen, F., Câmara, F., Guigó, R., Stanke, M., Solovyev, V., Kosarev, P., Gilbert, D., Gabaldón, T., Huerta-Cepas, J., Marcet-Houben, M., Pignatelli, M., Moya, A., Rispe, C., Ollivier, M., Quesneville, H., Permal, E., Llorens, C., Futami, R., Hedges, D., Robertson, H. M., Alioto, T., Mariotti, M., Nikoh, N., McCutcheon, J. P., Burke, G., Kamins, A., Latorre, A., Ashton, P., Calevro, F., Charles, H., Colella, S., Douglas, A. E., Jander, G., Jones, D. H., Febvay, G., Kamphuis, L. G., Kushlan, P. F., Macdonald, S., Ramsey, J., Schwartz, J., Seah, S., Thomas, G., Vellozo, A., Cass, B., Degnan, P., Hurwitz, B., Leonardo, T., Koga, R., Altincicek, B., Anselme, C., Atamian, H., Barribeau, S. M., De Vos, M., Duncan, E. J., Evans, J., Ghanim, M., Heddi, A., Kaloshian, I., Vincent-Monegat, C., Parker, B. J., Pérez-Brocal, V., Rahbé, Y., Spragg, C. J., Tamames, J., Tamarit, D., Tamborindeguy, C., Vilcinskas, A., Bickel, R. D., Brisson, J. A., Butts, T., Chang, C. C., Christiaens, O., Davis, G. K., Duncan, E., Ferrier, D., Iga, M., Janssen, R., Lu, H. L., McGregor, A., Miura, T., Smagghe, G., Smith, J., Van Der Zee, M., Velarde, R., Wilson, M., Dearden, P., Edwards, O. R., Gordon, K., Hilgarth, R. S., Rider, S. D., Srinivasan, D., Walsh, T. K., Ishikawa, A., Jaubert-Possamai, S., Fenton, B., Huang, W., Rizk, G., Lavenier, D., Nicolas, J., Smadja, C., Zhou, J. J., Vieira, F. G., He, X. L., Liu, R., Rozas, J., Field, L. M., Campbell, P., Carolan, J. C., Fitzroy, C. I. J., Reardon, K. T., Reeck, G. R., Singh, K., Wilkinson, T. L., Huybrechts, J., Abdel-Latief, M., Robichon, A., Veenstra, J. A., Hauser, F., Cazzamali, G., Schneider, M., Williamson, M., Stafflinger, E., Hansen, K. K., Grimmelikhuijzen, C. J. P., Price, D. R. G., Caillaud, M., Van Fleet, E., Ren, Q., Gatehouse, J. A., Brault, V., Monsion, B., Diaz, J., Hunnicutt, L., Ju, H. J., Pechuan, X., Aguilar, J., Cortés, T., Ortiz-Rivas, B., Martínez-Torres, D., Dombrovsky, A., Dale, R. P., Davies, T. G. E., Williamson, M. S., Jones, A., Sattelle, D., Williamson, S., Wolstenholme, A., Cottret, L., Sagot, M. F., Heckel, D. G. & Hunter, W., 2010, I: PLoS Biology. 8, 2, e1000313.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Aphids 100%
  • Peas 84%
  • Acyrthosiphon pisum 75%
  • MicroRNA 72%
  • Developmental 71%
  713 Citationer (Scopus)

• Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

  Kirkness, E. F., Haas, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubío, J. M. C., Ribeiro, J. M. C., Rozas, J., & 51 flereJohnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguadé, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N. K., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 jul. 2010, I: Proceedings of the National Academy of Sciences of the United States of America. 107, 27, s. 12168-12173 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Pediculus 100%
  • Human Body 63%
  • Life Style 53%
  • Genome 44%
  • Insect Genome 41%
  324 Citationer (Scopus)
• 2009

  Molecular evolution of the major chemosensory gene families in insects

  Sánchez-Gracia, A., Vieira, F. G. & Rozas, J., sep. 2009, I: Heredity. 103, 3, s. 208-216 9 s.

  Publikation: Bidrag til tidsskrift › Review › peer review

  • Molecular Evolution 100%
  • Insecta 81%
  • Insect Genome 36%
  • odorant-binding protein 34%
  • Cues 33%
  252 Citationer (Scopus)
• 2008

  Processing of a membrane protein required for cell-to-cell signaling during endospore formation in Bacillus subtilis

  Serrano, M., Vieira, F., Moran, C. P. & Henriques, A. O., dec. 2008, I: Journal of Bacteriology. 190, 23, s. 7786-7796 11 s.

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  • Bacillus subtilis 100%
  • Membrane Proteins 75%
  • Signal Transduction 71%
  • RNA polymerase sigma G 70%
  • Protein Sorting Signals 65%
  13 Citationer (Scopus)
• 2007

  Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution

  Vieira, F. G., Sánchez-Gracia, A. & Rozas, J., 8 nov. 2007, I: Genome Biology (Online). 8, 11, R235.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • odorant-binding protein 100%
  • odorant receptors 75%
  • Genomics 57%
  • genomics 56%
  • genome 52%
  112 Citationer (Scopus)

• Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

  Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W., & 31 flereAquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, R., Pedersen, J. S., Garrett Vieira, F. J. & Drosophila 12 Genomes Consortium, 2007, I: Nature. 450, 7167, s. 203-18 15 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Phylogeny 100%
  • Drosophila 77%
  • Genome 56%
  • Genes 33%
  • Ecology 25%
  1361 Citationer (Scopus)