Ala Trusina

Publikation

Publikationer pr. år 2002 2005 2008 2010 2011 2012 2016 2017 2019 2019

• 38 Tidsskriftartikel
• 1 Bidrag til bog/antologi

Publikationer pr. år

Publikationer pr. år

Søgeresultater

• 2019

  Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress

  Igbaria, A., Merksamer, P. I., Trusina, A., Tilahun, F., Johnson, J. R., Brandman, O., Krogan, N. J., Weissman, J. S. & Papa, F. R., 1 jan. 2019, I: Proceedings of the National Academy of Sciences of the United States of America. 166, 23, s. 11291-11298 8 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Endoplasmic Reticulum Stress 100%
  • Cytosol 86%
  • Endoplasmic Reticulum 85%
  • Proteins 32%
  • Secretory Pathway 23%
  10 Citationer (Scopus)

• Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

  Kirkegaard, J. B., Nielsen, B. F., Trusina, A. & Sneppen, K., 1 okt. 2019, I: Journal of the Royal Society. Interface. 16, 159, 8 s., 20190517.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Self assembly 100%
  • Buckling 67%
  • Polarity 62%
  • Cell Polarity 47%
  • Blood Vessels 45%
  1 Citationer (Scopus)

• The fitness cost and benefit of phase-separated protein deposits

  Sanchez de Groot, N., Torrent Burgas, M., Ravarani, C. N. J., Trusina, A., Ventura, S. & Babu, M. M., apr. 2019, I: Molecular Systems Biology. 15, 4, e8075.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Fitness 100%
  • Protein 92%
  • Deposits 87%
  • Proteins 81%
  • Cost-Benefit Analysis 77%
  7 Citationer (Scopus)

  21 Downloads (Pure)
• 2018

  Theoretical tool bridging cell polarities with development of robust morphologies

  Nissen, S. B., Rønhild, S., Trusina, A. & Sneppen, K., 1 nov. 2018, I: eLife. 7, 25 s., e38407.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Body Patterning 100%
  • Cell Polarity 77%
  • Polarity 50%
  • Polar Bodies 44%
  • Gastrulation 40%
  7 Citationer (Scopus)

  125 Downloads (Pure)
• 2017

  Four simple rules that are sufficient to generate the mammalian blastocyst

  Nissen, S. B., Perera Pérez, M., Martin Gonzalez, J., Morgani, S. M. C., Jensen, M. H., Sneppen, K., Brickman, J. M. & Trusina, A., 12 jul. 2017, I: PLOS Biology. 15, 7, s. 1-30 e2000737.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Developmental 100%
  • Blastocyst 94%
  • blastocyst 79%
  • gene regulatory networks 61%
  • Gene Regulatory Networks 59%
  22 Citationer (Scopus)

  115 Downloads (Pure)

• Impact of Zygosity on Bimodal Phenotype Distributions

  Holst-Hansen, T., Abad, E., Muntasell, A., López-Botet, M., Jensen, M. H., Trusina, A. & Garcia-Ojalvo, J., 11 jul. 2017, I: Biophysical Journal. 113, 1, s. 148-156 9 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Phenotype 100%
  • Gene Regulatory Networks 90%
  • Gene Expression 74%
  • Alleles 60%
  • Genes 50%

• Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis

  Larsen, H. L., Martin-Coll, L., Nielsen, A. V., Wright, C. V. E., Trusina, A., Kim, Y. H. & Grapin-Botton, A., 1 dec. 2017, I: Nature Communications. 8, 605.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • pancreas 100%
  • priming 94%
  • Proliferative 87%
  • Organogenesis 80%
  • cues 78%
  19 Citationer (Scopus)

  303 Downloads (Pure)
• 2016

  Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response

  Vedel, S., Nunns, H., Košmrlj, A., Semsey, S. & Trusina, A., 24 aug. 2016, I: Cell Systems. 3, 2, s. 187-198

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Population 100%
  • Protein Aggregates 54%
  • Heat-Shock Response 46%
  • Cell Lineage 44%
  • Cell Division 40%
  19 Citationer (Scopus)

• Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions

  Di Roberto, R. B., Chang, B., Trusina, A. & Peisajovich, S. G., 4 aug. 2016, I: Nature Communications. 7, 12344.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Pheromones 100%
  • Pheromone 93%
  • mutations 86%
  • G-Protein-Coupled Receptors 74%
  • Mutation 62%
  7 Citationer (Scopus)

  82 Downloads (Pure)

• Nucleation and spreading of a heterochromatic domain in fission yeast

  Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, K., Trusina, A. & Thon, G., 11 maj 2016, I: Nature Communications. 7, 11 s., 11518.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Heterochromatin 100%
  • Schizosaccharomyces 97%
  • yeast 96%
  • Fission 90%
  • enzymes 86%
  24 Citationer (Scopus)

  143 Downloads (Pure)
• 2014

  Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli

  Bendtsen, K. M., Jensen, M. B., May, A., Rasmussen, L. J., Trusina, A., Bohr, V. & Jensen, M. H., 14 nov. 2014, I: European Biophysics Journal. 43, 10-11, s. 509-516

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Bloom syndrome protein 100%
  • DNA Repair 53%
  • DNA Damage 25%
  • DNA 16%
  • Proteins 3%
  4 Citationer (Scopus)

• Stress induced telomere shortening: longer life with less mutations?

  Trusina, A., 1 mar. 2014, I: B M C Systems Biology. 8, 27.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Telomere Shortening 100%
  • Mutation 75%
  • Telomere 66%
  • Life 65%
  • Cell 55%
  16 Citationer (Scopus)

  401 Downloads (Pure)
• 2013

  Noisy transcription factor NF-¿B oscillations stabilize and sensitize cytokine signaling in space

  Gangstad, S. W., Feldager, C. W., Juul, J. S. & Trusina, A., 5 feb. 2013, I: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 87, 2, s. 022702

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Cytokines 100%
  • Transcription Factor 97%
  • Inflammation 50%
  • Oscillation 48%
  • oscillations 39%
  5 Citationer (Scopus)

• Two portable recombination enhancers direct donor choice in fission yeast heterochromatin

  Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, A. & Thon, G., okt. 2013, I: P L o S Genetics. 9, 10, 14 s., e1003762.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Heterochromatin 100%
  • Schizosaccharomyces 97%
  • Schizosaccharomyces pombe 94%
  • recombination 88%
  • heterochromatin 87%
  16 Citationer (Scopus)

  1181 Downloads (Pure)
• 2012

  Circuit architecture explains functional similarity of bacterial heat shock responses

  Masayo, I., Mitarai, N. & Trusina, A., 1 dec. 2012, I: Physical Biology. 9, 6, s. 066003

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Heat-Shock Response 100%
  • Transcription Factors 51%
  • Protein Unfolding 30%
  • Protein Folding 26%
  • Gram-Positive Bacteria 24%
  1 Citationer (Scopus)

• Conditional Cooperativity in Toxin-Antitoxin Regulation Prevents Random Toxin Activation and Promotes Fast Translational Recovery

  Cataudella, I., Trusina, A., Sneppen, K., Gerdes, K. & Mitarai, N., aug. 2012, I: Nucleic Acids Research. 40, 14, s. 6424-6434

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Antitoxins 100%
  • Explosions 44%
  • Starvation 38%
  • Theoretical Models 29%
  • Escherichia coli 25%
  59 Citationer (Scopus)

• Fragile DNA Repair Mechanism Reduces Ageing in Multicellular Model

  Bendtsen, K. M., Juul, J. S. & Trusina, A., 2 maj 2012, I: P L o S One. 7, 5, s. e36018

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Repair 100%
  • DNA repair 97%
  • DNA 92%
  • repair 86%
  • DNA Repair 82%
  4 Citationer (Scopus)

• IRE1 alpha Induces Thioredoxin-Interacting Protein to Activate the NLRP3 Inflammasome and Promote Programmed Cell Death under Irremediable ER Stress

  Lerner, A. G., Upton, J-P., Praveen, P. V. K., Ghosh, R., Nakagawa, Y., Igbaria, A., Shen, S., Nguyen, V., Bradley, B. J., Heiman, M. & Trusina, A., 8 aug. 2012, I: Cell Metabolism. 16, 2, s. 250-264 14 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Thioredoxins 100%
  • Inflammasomes 95%
  • Endoplasmic Reticulum Stress 88%
  • Apoptosis 48%
  • Unfolded Protein Response 42%
  467 Citationer (Scopus)

• Nested feedback loops in gene regulation

  Mengel, A. B., Krishna, S., Jensen, M. H. & Trusina, A., 1 jan. 2012, I: Physica A: Statistical Mechanics and its Applications. 391, 1-2, s. 100-106

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  • Gene Regulation 100%
  • gene expression 86%
  • Feedback Loop 85%
  • Oscillation 49%
  • oscillations 34%
  9 Citationer (Scopus)
• 2011

  Analyzing inflammatory response as excitable media

  Yde, P., Jensen, M. H. & Trusina, A., 18 nov. 2011, I: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 5, Part 1, s. 051913

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Cytokines 100%
  • Excitable Media 95%
  • stimuli 28%
  • Model 20%
  • Neutrophils 17%
  4 Citationer (Scopus)

• Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity

  Mathiesen, J., Mitarai, N., Sneppen, K. & Trusina, A., 25 okt. 2011, I: Physical Review Letters. 107, 18, s. 188101

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • ecosystems 100%
  • lichens 64%
  • organisms 39%
  • interactions 28%
  • requirements 24%
  36 Citationer (Scopus)

• Modeling the NF-kappa B mediated inflammatory response predicts cytokine waves in tissue

  Yde, P., Mengel, A. B., Jensen, M. H., Krishna, S. & Trusina, A., 19 jul. 2011, I: BMC Systems Biology. 5, s. 115

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Cytokines 100%
  • Chemotactic Factors 67%
  • NF-kappa B 63%
  • Predict 55%
  • Dictyostelium 51%
  39 Citationer (Scopus)

  928 Downloads (Pure)

• Targeted bacterial immunity buffres phage diversity

  Härter, J. O. M., Trusina, A. & Sneppen, K., okt. 2011, I: Journal of Virology. 85, 20, s. 10554-10560 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Clustered Regularly Interspaced Short Palindromic Repeats 100%
  • Bacteriophages 86%
  • phages 80%
  • Defense Mechanisms 77%
  • immunity 76%
  27 Citationer (Scopus)
• 2010

  A minimal model for multiple epidemics and immunity spreading

  Sneppen, K., Trusina, A., Jensen, M. H. & Bornholdt, S., 18 okt. 2010, I: PLoS ONE. 5, 10, s. e13326

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • immunity 100%
  • Immunity 98%
  • Minimal Model 95%
  • Epidemics 70%
  • Immunization 48%
  23 Citationer (Scopus)

  793 Downloads (Pure)

• Modeling oscillatory control in NF-¿B, p53 and Wnt signaling

  Mengel, B., Hunziker, A., Pedersen, L., Trusina, A., Jensen, M. H. & Krishna, S., 1 dec. 2010, I: Current Opinion in Genetics & Development. 20, 6, s. 656-64 9 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Calcium Signaling 100%
  • Circadian Rhythm 89%
  • Growth and Development 87%
  • Embryonic Development 77%
  • Immune System 67%
  52 Citationer (Scopus)

• The unfolded protein response and translation attenuation: a modelling approach.

  Trusina, A. & Tang, C., okt. 2010, I: Diabetes, Obesity and Metabolism Online. 12, s. 27-31

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Unfolded Protein Response 100%
  • Protein Biosynthesis 87%
  • Endoplasmic Reticulum 76%
  • Endoplasmic Reticulum Stress 67%
  • Peptide Hydrolases 33%
  8 Citationer (Scopus)
• 2009

  Defining Network Topologies that Can Achieve Biochemical Adaptation

  Ma, W., Trusina, A., El-Samad, H., Lim, W. A. & Tang, C., 21 aug. 2009, I: Cell. 138, 4, s. 760-773

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  566 Citationer (Scopus)
• 2008

  Rationalizing translation attenuation in the network architecture of the unfolded protein response

  Trusina, A., Papa, F. R. & Tang, C., 23 dec. 2008, I: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, s. 20280-20285

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  37 Citationer (Scopus)

• Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions

  Merksamer, P., Trusina, A. & Papa, F., 20 nov. 2008, I: Cell. 135, 5, s. 933-947

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  202 Citationer (Scopus)

• Translation attenuation mechanism in unfolded protein response

  Trusina, A., Papa, F. & Tang, C., 1 dec. 2008, Evolution from Cellular to Social Scales. Skjeltorp, A., Skjeltorp, A. & Belushkin, A. (red.). s. 83-90 8 s. (NATO Science for Peace and Security Series B: Physics and Biophysics).

  Publikation: Bidrag til bog/antologi/rapport › Bidrag til bog/antologi › Forskning › peer review

  • Unfolded Protein Response 100%
  • Endoplasmic Reticulum 76%
  • Insulin 54%
  • Protein Unfolding 54%
  • Organelles 38%
• 2006

  Degree landscapes in scale-free networks

  Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, K. & Trusina, A., sep. 2006, I: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3

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  9 Citationer (Scopus)

• Functional alignment of regulatory networks: a study of temperate phages

  Trusina, A., Sneppen, K., Dodd, I. B., Shearwin, K. E. & Egan, J. B., 2006, I: PLoS Computational Biology. 1, 7, s. 599-603

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  4 Citationer (Scopus)
• 2005

  Hide-and-seek on complex networks

  Sneppen, K., Trusina, A. & Rosvall, M., mar. 2005, I: EPL. 69, 5, s. 853-859

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  42 Citationer (Scopus)

• Measuring information networks

  Sneppen, K., Trusina, A. & Rosvall, M., jun. 2005, I: Pramana – Journal of Physics. 64, 6, s. 1121-1125

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  3 Citationer (Scopus)

• Networks and Cities: An Information Perspective

  Rosvall, M., Trusina, A., Minnhagen, P. & Sneppen, K., 2005, I: Physical Review Letters. 94, 2, 028701.

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  176 Citationer (Scopus)
• 2004

  Hierarchy measures in complex networks

  Trusina, A., Maslov, S., Minnhagen, P. & Sneppen, K., 30 apr. 2004, I: Physical Review Letters. 92, 17, 178702.

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  103 Citationer (Scopus)

• Self-organization of structures and networks from merging and small-scale fluctuations

  Minnhagen, P., Rosvall, M., Sneppen, K. & Trusina, A., 15 sep. 2004, I: Physica A: Statistical Mechanics and its Applications. 340, 4, s. 725-732

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  12 Citationer (Scopus)
• 2003

  Prisoners' dilemma in real-world acquaintance networks: Spikes and quasiequilibria induced by the interplay between structure and dynamics

  Holme, P., Trusina, A., Kim, BJ. & Minnhagen, P., sep. 2003, I: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 68, 3

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  87 Citationer (Scopus)
• 2002

  Dynamic instabilities induced by asymmetric influence: Prisoners' dilemma game in small-world networks

  Kim, BJ., Trusina, A., Holme, P., Minnhagen, P., Chung, JS. & Choi, MY., aug. 2002, I: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 66, 2, 021907.

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  192 Citationer (Scopus)