The prehistoric peopling of Southeast Asia

Hugh McColl; Fernando Racimo; Lasse Vinner; Fabrice Pietrot Maurice Demeter; Takashi Gakuhari; José Víctor Moreno Mayar; George van Driem; Uffe Gram Wilken; Andaine Seguin-Orlando; Constanza Pilar de la Fuente Castro; Sally Wasef; Rasmi Shoocongdej; Viengkeo Souksavatdy; Thongsa Sayavongkhamdy; Mohd Mokhtar Saidin; Morten E Allentoft; Takehiro Sato; Anna-Sapfo Malaspinas; Farhang A Aghakhanian; Thorfinn Sand Korneliussen; Ana Prohaska; Ashot Margaryan; Peter de Barros Damgaard; Supannee Kaewsutthi; Patcharee Lertrit; Thi Mai Huong Nguyen; Hsiao-Chun Hung; Thi Minh Tran; Huu Nghia Truong; Giang Hai Nguyen; Shaiful Shahidan; Ketut Wiradnyana; Hiromi Matsumae; Nobuo Shigehara; Minoru Yoneda; Hajime Ishida; Tadayuki Masuyama; Yasuhiro Yamada; Atsushi Tajima; Hiroki Shibata; Atsushi Toyoda; Tsunehiko Hanihara; Shigeki Nakagome; Thibaut Deviese; Anne-Marie Bacon; Philippe Duringer; Jean-Luc Ponche; Laura Shackelford; Elise Patole-Edoumba; Anh Tuan Nguyen; Bérénice Bellina-Pryce; Jean-Christophe Galipaud; Rebecca Kinaston; Hallie Buckley; Christophe Pottier; Simon Rasmussen; Tom Higham; Robert A Foley; Marta Mirazón Lahr; Ludovic Orlando; Martin Sikora; Maude E Phipps; Hiroki Oota; Charles Higham; David M Lambert; Eske Willerslev

doi:10.1126/science.aat3628

The prehistoric peopling of Southeast Asia

Hugh McColl, Fernando Racimo, Lasse Vinner, Fabrice Pietrot Maurice Demeter, Takashi Gakuhari, José Víctor Moreno Mayar, George van Driem, Uffe Gram Wilken, Andaine Seguin-Orlando, Constanza Pilar de la Fuente Castro, Sally Wasef, Rasmi Shoocongdej, Viengkeo Souksavatdy, Thongsa Sayavongkhamdy, Mohd Mokhtar Saidin, Morten E Allentoft, Takehiro Sato, Anna-Sapfo Malaspinas, Farhang A Aghakhanian, Thorfinn Sand KorneliussenAna Prohaska, Ashot Margaryan, Peter de Barros Damgaard, Supannee Kaewsutthi, Patcharee Lertrit, Thi Mai Huong Nguyen, Hsiao-Chun Hung, Thi Minh Tran, Huu Nghia Truong, Giang Hai Nguyen, Shaiful Shahidan, Ketut Wiradnyana, Hiromi Matsumae, Nobuo Shigehara, Minoru Yoneda, Hajime Ishida, Tadayuki Masuyama, Yasuhiro Yamada, Atsushi Tajima, Hiroki Shibata, Atsushi Toyoda, Tsunehiko Hanihara, Shigeki Nakagome, Thibaut Deviese, Anne-Marie Bacon, Philippe Duringer, Jean-Luc Ponche, Laura Shackelford, Elise Patole-Edoumba, Anh Tuan Nguyen, Bérénice Bellina-Pryce, Jean-Christophe Galipaud, Rebecca Kinaston, Hallie Buckley, Christophe Pottier, Simon Rasmussen, Tom Higham, Robert A Foley, Marta Mirazón Lahr, Ludovic Orlando, Martin Sikora, Maude E Phipps, Hiroki Oota, Charles Higham, David M Lambert, Eske Willerslev

85 Citations (Scopus)

Abstract

The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the "two-layer" hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.

Original language	English
Journal	Science (New York, N.Y.)
Volume	361
Issue number	6397
Pages (from-to)	88-92
Number of pages	5
ISSN	0036-8075
DOIs	https://doi.org/10.1126/science.aat3628
Publication status	Published - 6 Jul 2018

Keywords

Asia, Southeastern
Asian Continental Ancestry Group/genetics
DNA, Ancient
Genetic Variation
Genome, Human
History, Ancient
Human Migration/history
Humans
Population/genetics
Sequence Analysis, DNA

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McColl, H., Racimo, F., Vinner, L., Demeter, F. P. M., Gakuhari, T., Moreno Mayar, J. V., van Driem, G., Gram Wilken, U., Seguin-Orlando, A., de la Fuente Castro, C. P., Wasef, S., Shoocongdej, R., Souksavatdy, V., Sayavongkhamdy, T., Saidin, M. M., Allentoft, M. E., Sato, T., Malaspinas, A-S., Aghakhanian, F. A., ... Willerslev, E. (2018). The prehistoric peopling of Southeast Asia. Science (New York, N.Y.), 361(6397), 88-92. https://doi.org/10.1126/science.aat3628

McColl, H , Racimo, F , Vinner, L , Demeter, FPM, Gakuhari, T, Moreno Mayar, JV, van Driem, G, Gram Wilken, U, Seguin-Orlando, A, de la Fuente Castro, CP, Wasef, S, Shoocongdej, R, Souksavatdy, V, Sayavongkhamdy, T, Saidin, MM, Allentoft, ME, Sato, T, Malaspinas, A-S, Aghakhanian, FA, Korneliussen, TS, Prohaska, A, Margaryan, A, Damgaard, PDB, Kaewsutthi, S, Lertrit, P, Nguyen, TMH, Hung, H-C, Minh Tran, T, Nghia Truong, H, Nguyen, GH, Shahidan, S, Wiradnyana, K, Matsumae, H, Shigehara, N, Yoneda, M, Ishida, H, Masuyama, T, Yamada, Y, Tajima, A, Shibata, H, Toyoda, A, Hanihara, T, Nakagome, S, Deviese, T, Bacon, A-M, Duringer, P, Ponche, J-L, Shackelford, L, Patole-Edoumba, E, Nguyen, AT, Bellina-Pryce, B, Galipaud, J-C, Kinaston, R, Buckley, H, Pottier, C, Rasmussen, S, Higham, T, Foley, RA, Lahr, MM, Orlando, L, Sikora, M, Phipps, ME, Oota, H, Higham, C, Lambert, DM & Willerslev, E 2018, 'The prehistoric peopling of Southeast Asia', Science (New York, N.Y.), vol. 361, no. 6397, pp. 88-92. https://doi.org/10.1126/science.aat3628

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title = "The prehistoric peopling of Southeast Asia",

abstract = "The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by H{\`o}ab{\`i}nhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the {"}two-layer{"} hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both H{\`o}ab{\`i}nhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.",

keywords = "Asia, Southeastern, Asian Continental Ancestry Group/genetics, DNA, Ancient, Genetic Variation, Genome, Human, History, Ancient, Human Migration/history, Humans, Population/genetics, Sequence Analysis, DNA",

author = "Hugh McColl and Fernando Racimo and Lasse Vinner and Demeter, {Fabrice Pietrot Maurice} and Takashi Gakuhari and {Moreno Mayar}, {Jos{\'e} V{\'i}ctor} and {van Driem}, George and {Gram Wilken}, Uffe and Andaine Seguin-Orlando and {de la Fuente Castro}, {Constanza Pilar} and Sally Wasef and Rasmi Shoocongdej and Viengkeo Souksavatdy and Thongsa Sayavongkhamdy and Saidin, {Mohd Mokhtar} and Allentoft, {Morten E} and Takehiro Sato and Anna-Sapfo Malaspinas and Aghakhanian, {Farhang A} and Korneliussen, {Thorfinn Sand} and Ana Prohaska and Ashot Margaryan and Damgaard, {Peter de Barros} and Supannee Kaewsutthi and Patcharee Lertrit and Nguyen, {Thi Mai Huong} and Hsiao-Chun Hung and {Minh Tran}, Thi and {Nghia Truong}, Huu and Nguyen, {Giang Hai} and Shaiful Shahidan and Ketut Wiradnyana and Hiromi Matsumae and Nobuo Shigehara and Minoru Yoneda and Hajime Ishida and Tadayuki Masuyama and Yasuhiro Yamada and Atsushi Tajima and Hiroki Shibata and Atsushi Toyoda and Tsunehiko Hanihara and Shigeki Nakagome and Thibaut Deviese and Anne-Marie Bacon and Philippe Duringer and Jean-Luc Ponche and Laura Shackelford and Elise Patole-Edoumba and Nguyen, {Anh Tuan} and B{\'e}r{\'e}nice Bellina-Pryce and Jean-Christophe Galipaud and Rebecca Kinaston and Hallie Buckley and Christophe Pottier and Simon Rasmussen and Tom Higham and Foley, {Robert A} and Lahr, {Marta Miraz{\'o}n} and Ludovic Orlando and Martin Sikora and Phipps, {Maude E} and Hiroki Oota and Charles Higham and Lambert, {David M} and Eske Willerslev",

note = "Copyright {\textcopyright} 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.",

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doi = "10.1126/science.aat3628",

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T1 - The prehistoric peopling of Southeast Asia

AU - McColl, Hugh

AU - Racimo, Fernando

AU - Vinner, Lasse

AU - Demeter, Fabrice Pietrot Maurice

AU - Gakuhari, Takashi

AU - Moreno Mayar, José Víctor

AU - van Driem, George

AU - Gram Wilken, Uffe

AU - Seguin-Orlando, Andaine

AU - de la Fuente Castro, Constanza Pilar

AU - Wasef, Sally

AU - Shoocongdej, Rasmi

AU - Souksavatdy, Viengkeo

AU - Sayavongkhamdy, Thongsa

AU - Saidin, Mohd Mokhtar

AU - Allentoft, Morten E

AU - Sato, Takehiro

AU - Malaspinas, Anna-Sapfo

AU - Aghakhanian, Farhang A

AU - Korneliussen, Thorfinn Sand

AU - Prohaska, Ana

AU - Margaryan, Ashot

AU - Damgaard, Peter de Barros

AU - Kaewsutthi, Supannee

AU - Lertrit, Patcharee

AU - Nguyen, Thi Mai Huong

AU - Hung, Hsiao-Chun

AU - Minh Tran, Thi

AU - Nghia Truong, Huu

AU - Nguyen, Giang Hai

AU - Shahidan, Shaiful

AU - Wiradnyana, Ketut

AU - Matsumae, Hiromi

AU - Shigehara, Nobuo

AU - Yoneda, Minoru

AU - Ishida, Hajime

AU - Masuyama, Tadayuki

AU - Yamada, Yasuhiro

AU - Tajima, Atsushi

AU - Shibata, Hiroki

AU - Toyoda, Atsushi

AU - Hanihara, Tsunehiko

AU - Nakagome, Shigeki

AU - Deviese, Thibaut

AU - Bacon, Anne-Marie

AU - Duringer, Philippe

AU - Ponche, Jean-Luc

AU - Shackelford, Laura

AU - Patole-Edoumba, Elise

AU - Nguyen, Anh Tuan

AU - Bellina-Pryce, Bérénice

AU - Galipaud, Jean-Christophe

AU - Kinaston, Rebecca

AU - Buckley, Hallie

AU - Pottier, Christophe

AU - Rasmussen, Simon

AU - Higham, Tom

AU - Foley, Robert A

AU - Lahr, Marta Mirazón

AU - Orlando, Ludovic

AU - Sikora, Martin

AU - Phipps, Maude E

AU - Oota, Hiroki

AU - Higham, Charles

AU - Lambert, David M

AU - Willerslev, Eske

PY - 2018/7/6

Y1 - 2018/7/6

N2 - The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the "two-layer" hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.

AB - The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the "two-layer" hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.

KW - Asia, Southeastern

KW - Asian Continental Ancestry Group/genetics

KW - DNA, Ancient

KW - Genetic Variation

KW - Genome, Human

KW - History, Ancient

KW - Human Migration/history

KW - Humans

KW - Population/genetics

KW - Sequence Analysis, DNA

U2 - 10.1126/science.aat3628

DO - 10.1126/science.aat3628

M3 - Journal article

C2 - 29976827

SN - 0036-8075

VL - 361

SP - 88

EP - 92

JO - Science

JF - Science

IS - 6397

ER -

The prehistoric peopling of Southeast Asia

Abstract

Keywords

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