The genome of the model beetle and pest Tribolium castaneum.

Stephen Richards; Principal investigators; Richard A Gibbs; George M Weinstock; White paper; Susan J Brown; Robin Denell; Richard W Beeman; Richard Gibbs; Analysis leaders; Richard W Beeman; Susan J Brown; Gregor Bucher; Markus Friedrich; Cornelis J P Grimmelikhuijzen; Martin Klingler; Marce Lorenzen; Stephen Richards; Siegfried Roth; Reinhard Schröder; Diethard Tautz; Evgeny M Zdobnov; DNA sequence and global analysis: DNA sequencing; Donna Muzny; Richard A Gibbs; George M Weinstock; Tony Attaway; Stephanie Bell; Christian J Buhay; Mimi N Chandrabose; Dean Chavez; Kerstin P Clerk-Blankenburg; Andrew Cree; Marvin Dao; Clay Davis; Joseph Chacko; Huyen Dinh; Shannon Dugan-Rocha; Gerald Fowler; Toni T Garner; Jeffrey Garnes; Andreas Gnirke; Alica Hawes; Judith Hernandez; Sandra Hines; Michael Holder; Jennifer Hume; Shalini N Jhangiani; Vandita Joshi; Ziad Mohid Khan; EST sequencing; genome assembly; G+C content; repetitive DNA, transposons and telomeres; gene prediction and consensus gene set; global gene content analysis; Developmental processes and signalling pathways; Pest biology, senses, Medea and RNAi: ligand gated ion channels; oxidative phosphorylation; P450 genes; chitin and cuticular proteins; digestive proteinases; immunity; neurohormones and GPCRs; Cornelis J P Grimmelikhuijzen; Frank Hauser; Giuseppe Cazzamali; Michael Williamson; Tribolium Genome Sequencing Consortium; Project leader; neuropeptide processing enzymes; opsins; odorant receptors and gustatory receptors; odorant binding and chemosensory proteins; Medea; systemic RNAi

doi:10.1038/nature06784

The genome of the model beetle and pest Tribolium castaneum.

Stephen Richards, Principal investigators, Richard A Gibbs, George M Weinstock, White paper, Susan J Brown, Robin Denell, Richard W Beeman, Richard Gibbs, Analysis leaders, Richard W Beeman, Susan J Brown, Gregor Bucher, Markus Friedrich, Cornelis J P Grimmelikhuijzen, Martin Klingler, Marce Lorenzen, Stephen Richards, Siegfried Roth, Reinhard SchröderDiethard Tautz, Evgeny M Zdobnov, DNA sequence and global analysis: DNA sequencing, Donna Muzny, Richard A Gibbs, George M Weinstock, Tony Attaway, Stephanie Bell, Christian J Buhay, Mimi N Chandrabose, Dean Chavez, Kerstin P Clerk-Blankenburg, Andrew Cree, Marvin Dao, Clay Davis, Joseph Chacko, Huyen Dinh, Shannon Dugan-Rocha, Gerald Fowler, Toni T Garner, Jeffrey Garnes, Andreas Gnirke, Alica Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Ziad Mohid Khan, EST sequencing, genome assembly, G+C content, repetitive DNA, transposons and telomeres, gene prediction and consensus gene set, global gene content analysis, Developmental processes and signalling pathways, Pest biology, senses, Medea and RNAi: ligand gated ion channels, oxidative phosphorylation, P450 genes, chitin and cuticular proteins, digestive proteinases, immunity, neurohormones and GPCRs, Cornelis J P Grimmelikhuijzen, Frank Hauser, Giuseppe Cazzamali, Michael Williamson, Tribolium Genome Sequencing Consortium, Project leader, neuropeptide processing enzymes, opsins, odorant receptors and gustatory receptors, odorant binding and chemosensory proteins, Medea, systemic RNAi

Cell and Neurobiology

916 Citations (Scopus)

Abstract

Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.
Udgivelsesdato: e-pub.2008-Apr-24

Original language	English
Journal	Nature
Volume	452
Issue number	7190
Pages (from-to)	949-955
Number of pages	7
ISSN	0028-0836
DOIs	https://doi.org/10.1038/nature06784
Publication status	Published - 2008

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10.1038/nature06784

http://www.nature.com/nature/journal/v452/n7190/pdf/nature06784.pdf

Cite this

Richards, S., Principal investigators, Gibbs, R. A., Weinstock, G. M., White paper, Brown, S. J., Denell, R., Beeman, R. W., Gibbs, R., Analysis leaders, Beeman, R. W., Brown, S. J., Bucher, G., Friedrich, M., Grimmelikhuijzen, C. J. P., Klingler, M., Lorenzen, M., Richards, S., Roth, S., ... systemic RNAi (2008). The genome of the model beetle and pest Tribolium castaneum. Nature, 452(7190), 949-955. https://doi.org/10.1038/nature06784

Richards, S, Principal investigators, Gibbs, RA, Weinstock, GM, White paper, Brown, SJ, Denell, R, Beeman, RW, Gibbs, R, Analysis leaders, Beeman, RW, Brown, SJ, Bucher, G, Friedrich, M, Grimmelikhuijzen, CJP, Klingler, M, Lorenzen, M, Richards, S, Roth, S, Schröder, R, Tautz, D, Zdobnov, EM, DNA sequence and global analysis: DNA sequencing, Muzny, D, Gibbs, RA, Weinstock, GM, Attaway, T, Bell, S, Buhay, CJ, Chandrabose, MN, Chavez, D, Clerk-Blankenburg, KP, Cree, A, Dao, M, Davis, C, Chacko, J, Dinh, H, Dugan-Rocha, S, Fowler, G, Garner, TT, Garnes, J, Gnirke, A, Hawes, A, Hernandez, J, Hines, S, Holder, M, Hume, J, Jhangiani, SN, Joshi, V, Khan, ZM, EST sequencing, genome assembly, G+C content, repetitive DNA, transposons and telomeres, gene prediction and consensus gene set, global gene content analysis, Developmental processes and signalling pathways, Pest biology, senses, Medea and RNAi: ligand gated ion channels, oxidative phosphorylation, P450 genes, chitin and cuticular proteins, digestive proteinases, immunity, neurohormones and GPCRs, Grimmelikhuijzen, CJP , Hauser, F, Cazzamali, G, Williamson, M, Tribolium Genome Sequencing Consortium, Project leader, neuropeptide processing enzymes, opsins, odorant receptors and gustatory receptors, odorant binding and chemosensory proteins, Medea & systemic RNAi 2008, 'The genome of the model beetle and pest Tribolium castaneum.', Nature, vol. 452, no. 7190, pp. 949-955. https://doi.org/10.1038/nature06784

@article{02e191f0fb3811dcbee902004c4f4f50,

title = "The genome of the model beetle and pest Tribolium castaneum.",

abstract = "Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control. Udgivelsesdato: e-pub.2008-Apr-24",

author = "Stephen Richards and {Principal investigators} and Gibbs, {Richard A} and Weinstock, {George M} and {White paper} and Brown, {Susan J} and Robin Denell and Beeman, {Richard W} and Richard Gibbs and {Analysis leaders} and Beeman, {Richard W} and Brown, {Susan J} and Gregor Bucher and Markus Friedrich and Grimmelikhuijzen, {Cornelis J P} and Martin Klingler and Marce Lorenzen and Stephen Richards and Siegfried Roth and Reinhard Schr{\"o}der and Diethard Tautz and Zdobnov, {Evgeny M} and {DNA sequence and global analysis: DNA sequencing} and Donna Muzny and Gibbs, {Richard A} and Weinstock, {George M} and Tony Attaway and Stephanie Bell and Buhay, {Christian J} and Chandrabose, {Mimi N} and Dean Chavez and Clerk-Blankenburg, {Kerstin P} and Andrew Cree and Marvin Dao and Clay Davis and Joseph Chacko and Huyen Dinh and Shannon Dugan-Rocha and Gerald Fowler and Garner, {Toni T} and Jeffrey Garnes and Andreas Gnirke and Alica Hawes and Judith Hernandez and Sandra Hines and Michael Holder and Jennifer Hume and Jhangiani, {Shalini N} and Vandita Joshi and Khan, {Ziad Mohid} and {EST sequencing} and {genome assembly} and {G+C content} and {repetitive DNA, transposons and telomeres} and {gene prediction and consensus gene set} and {global gene content analysis} and {Developmental processes and signalling pathways} and {Pest biology, senses, Medea and RNAi: ligand gated ion channels} and {oxidative phosphorylation} and {P450 genes} and {chitin and cuticular proteins} and {digestive proteinases} and immunity and {neurohormones and GPCRs} and Grimmelikhuijzen, {Cornelis J P} and Frank Hauser and Giuseppe Cazzamali and Michael Williamson and {Tribolium Genome Sequencing Consortium} and {Project leader} and {neuropeptide processing enzymes} and opsins and {odorant receptors and gustatory receptors} and {odorant binding and chemosensory proteins} and Medea and {systemic RNAi}",

year = "2008",

doi = "10.1038/nature06784",

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pages = "949--955",

journal = "Nature",

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T1 - The genome of the model beetle and pest Tribolium castaneum.

AU - Richards, Stephen

AU - Principal investigators

AU - Gibbs, Richard A

AU - Weinstock, George M

AU - White paper

AU - Brown, Susan J

AU - Denell, Robin

AU - Beeman, Richard W

AU - Gibbs, Richard

AU - Analysis leaders

AU - Beeman, Richard W

AU - Brown, Susan J

AU - Bucher, Gregor

AU - Friedrich, Markus

AU - Grimmelikhuijzen, Cornelis J P

AU - Klingler, Martin

AU - Lorenzen, Marce

AU - Richards, Stephen

AU - Roth, Siegfried

AU - Schröder, Reinhard

AU - Tautz, Diethard

AU - Zdobnov, Evgeny M

AU - DNA sequence and global analysis: DNA sequencing

AU - Muzny, Donna

AU - Gibbs, Richard A

AU - Weinstock, George M

AU - Attaway, Tony

AU - Bell, Stephanie

AU - Buhay, Christian J

AU - Chandrabose, Mimi N

AU - Chavez, Dean

AU - Clerk-Blankenburg, Kerstin P

AU - Cree, Andrew

AU - Dao, Marvin

AU - Davis, Clay

AU - Chacko, Joseph

AU - Dinh, Huyen

AU - Dugan-Rocha, Shannon

AU - Fowler, Gerald

AU - Garner, Toni T

AU - Garnes, Jeffrey

AU - Gnirke, Andreas

AU - Hawes, Alica

AU - Hernandez, Judith

AU - Hines, Sandra

AU - Holder, Michael

AU - Hume, Jennifer

AU - Jhangiani, Shalini N

AU - Joshi, Vandita

AU - Khan, Ziad Mohid

AU - EST sequencing

AU - genome assembly

AU - G+C content

AU - repetitive DNA, transposons and telomeres

AU - gene prediction and consensus gene set

AU - global gene content analysis

AU - Developmental processes and signalling pathways

AU - Pest biology, senses, Medea and RNAi: ligand gated ion channels

AU - oxidative phosphorylation

AU - P450 genes

AU - chitin and cuticular proteins

AU - digestive proteinases

AU - immunity

AU - neurohormones and GPCRs

AU - Grimmelikhuijzen, Cornelis J P

AU - Hauser, Frank

AU - Cazzamali, Giuseppe

AU - Williamson, Michael

AU - Tribolium Genome Sequencing Consortium

AU - Project leader

AU - neuropeptide processing enzymes

AU - opsins

AU - odorant receptors and gustatory receptors

AU - odorant binding and chemosensory proteins

AU - Medea

AU - systemic RNAi

PY - 2008

Y1 - 2008

N2 - Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control. Udgivelsesdato: e-pub.2008-Apr-24

AB - Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control. Udgivelsesdato: e-pub.2008-Apr-24

U2 - 10.1038/nature06784

DO - 10.1038/nature06784

M3 - Journal article

C2 - 18362917

SN - 0028-0836

VL - 452

SP - 949

EP - 955

JO - Nature

JF - Nature

IS - 7190

ER -