Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S. da Costa; Alejandro P. Rooney; Hana Yi; Xue Wei Xu; Sofie De Meyer; Martha E. Trujillo

doi:10.1099/ijsem.0.002516

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun^*, Aharon Oren, Antonio Ventosa, Henrik Christensen, David Ruiz Arahal, Milton S. da Costa, Alejandro P. Rooney, Hana Yi, Xue Wei Xu, Sofie De Meyer, Martha E. Trujillo

^*Corresponding author for this work

966 Citations (Scopus)

100 Downloads (Pure)

Abstract

Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

Original language	English
Article number	002516
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	68
Issue number	1
Pages (from-to)	461-466
Number of pages	6
ISSN	1466-5026
DOIs	https://doi.org/10.1099/ijsem.0.002516
Publication status	Published - 2018

Keywords

Average nucleotide identity
Genome sequence
Minimal standards
Phylogenomics
Prokaryotic taxonomy

Access to Document

10.1099/ijsem.0.002516Licence: CC BY

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotesFinal published version, 309 KBLicence: CC BY

Cite this

Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D. R., da Costa, M. S., Rooney, A. P., Yi, H., Xu, X. W., De Meyer, S., & Trujillo, M. E. (2018). Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 68(1), 461-466. Article 002516. https://doi.org/10.1099/ijsem.0.002516

@article{f00758b4345b4cd8858e4e296dcfc844,

title = "Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes",

abstract = "Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.",

keywords = "Average nucleotide identity, Genome sequence, Minimal standards, Phylogenomics, Prokaryotic taxonomy",

author = "Jongsik Chun and Aharon Oren and Antonio Ventosa and Henrik Christensen and Arahal, {David Ruiz} and {da Costa}, {Milton S.} and Rooney, {Alejandro P.} and Hana Yi and Xu, {Xue Wei} and {De Meyer}, Sofie and Trujillo, {Martha E.}",

year = "2018",

doi = "10.1099/ijsem.0.002516",

language = "English",

volume = "68",

pages = "461--466",

journal = "International Journal of Systematic and Evolutionary Microbiology",

issn = "1466-5026",

publisher = "Society for General Microbiology",

number = "1",

}

TY - JOUR

T1 - Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

AU - Chun, Jongsik

AU - Oren, Aharon

AU - Ventosa, Antonio

AU - Christensen, Henrik

AU - Arahal, David Ruiz

AU - da Costa, Milton S.

AU - Rooney, Alejandro P.

AU - Yi, Hana

AU - Xu, Xue Wei

AU - De Meyer, Sofie

AU - Trujillo, Martha E.

PY - 2018

Y1 - 2018

N2 - Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

AB - Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

KW - Average nucleotide identity

KW - Genome sequence

KW - Minimal standards

KW - Phylogenomics

KW - Prokaryotic taxonomy

U2 - 10.1099/ijsem.0.002516

DO - 10.1099/ijsem.0.002516

M3 - Journal article

C2 - 29292687

AN - SCOPUS:85040040303

SN - 1466-5026

VL - 68

SP - 461

EP - 466

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 1

M1 - 002516

ER -

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Abstract

Keywords

Access to Document

Fingerprint

Cite this