Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S. da Costa; Alejandro P. Rooney; Hana Yi; Xue Wei Xu; Sofie De Meyer; Martha E. Trujillo

doi:10.1099/ijsem.0.002516

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun^*, Aharon Oren, Antonio Ventosa, Henrik Christensen, David Ruiz Arahal, Milton S. da Costa, Alejandro P. Rooney, Hana Yi, Xue Wei Xu, Sofie De Meyer, Martha E. Trujillo

^*Corresponding author af dette arbejde

966 Citationer (Scopus)

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Abstract

Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

Originalsprog	Engelsk
Artikelnummer	002516
Tidsskrift	International Journal of Systematic and Evolutionary Microbiology
Vol/bind	68
Udgave nummer	1
Sider (fra-til)	461-466
Antal sider	6
ISSN	1466-5026
DOI	https://doi.org/10.1099/ijsem.0.002516
Status	Udgivet - 2018

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10.1099/ijsem.0.002516Licens: CC BY

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotesForlagets udgivne version, 309 KBLicens: CC BY

Citationsformater

Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D. R., da Costa, M. S., Rooney, A. P., Yi, H., Xu, X. W., De Meyer, S., & Trujillo, M. E. (2018). Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 68(1), 461-466. Artikel 002516. https://doi.org/10.1099/ijsem.0.002516

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AU - Chun, Jongsik

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AU - Ventosa, Antonio

AU - Christensen, Henrik

AU - Arahal, David Ruiz

AU - da Costa, Milton S.

AU - Rooney, Alejandro P.

AU - Yi, Hana

AU - Xu, Xue Wei

AU - De Meyer, Sofie

AU - Trujillo, Martha E.

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AB - Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

KW - Average nucleotide identity

KW - Genome sequence

KW - Minimal standards

KW - Phylogenomics

KW - Prokaryotic taxonomy

U2 - 10.1099/ijsem.0.002516

DO - 10.1099/ijsem.0.002516

M3 - Journal article

C2 - 29292687

AN - SCOPUS:85040040303

SN - 1466-5026

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JO - International Journal of Systematic and Evolutionary Microbiology

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Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

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