Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways

Hannah L. Klein; Giedre Bacinskaja; Jun Che; Anais Cheblal; Rajula Elango; Anastasiya Epshtein; Devon M. Fitzgerald; Belén Gómez-González; Sharik R. Khan; Sandeep Kumar; Bryan A. Leland; Léa Marie; Qian Mei; Judith Miné-Hattab; Alicja Piotrowska; Erica J. Polleys; Christopher D. Putnam; Elina A. Radchenko; Anissia Ait Saada; Cynthia J. Sakofsky; Eun Yong Shim; Mathew Stracy; Jun Xia; Zhenxin Yan; Yi Yin; Andres Aguilera; Juan Lucas Argueso; Catherine H. Freudenreich; Susan M. Gasser; Dmitry A. Gordenin; James E Haber; Grzegorz Ira; Sue Jinks-Robertson; Megan C. King; Richard D. Kolodner; Andrei Kuzminov; Sarah A. E. Lambert; Sang Eun Lee; Kyle M. Miller; Sergei M. Mirkin; Thomas D. Petes; Susan M. Rosenberg; Rodney Rothstein; Lorraine S. Symington; Pawel Zawadzki; Nayun Kim; Michael Lisby; Anna Malkova

doi:10.15698/mic2019.01.664

Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways

Hannah L. Klein, Giedre Bacinskaja, Jun Che, Anais Cheblal, Rajula Elango, Anastasiya Epshtein, Devon M. Fitzgerald, Belén Gómez-González, Sharik R. Khan, Sandeep Kumar, Bryan A. Leland, Léa Marie, Qian Mei, Judith Miné-Hattab, Alicja Piotrowska, Erica J. Polleys, Christopher D. Putnam, Elina A. Radchenko, Anissia Ait Saada, Cynthia J. SakofskyEun Yong Shim, Mathew Stracy, Jun Xia, Zhenxin Yan, Yi Yin, Andres Aguilera, Juan Lucas Argueso, Catherine H. Freudenreich, Susan M. Gasser, Dmitry A. Gordenin, James E Haber, Grzegorz Ira, Sue Jinks-Robertson, Megan C. King, Richard D. Kolodner, Andrei Kuzminov, Sarah A. E. Lambert, Sang Eun Lee, Kyle M. Miller, Sergei M. Mirkin, Thomas D. Petes, Susan M. Rosenberg, Rodney Rothstein, Lorraine S. Symington, Pawel Zawadzki, Nayun Kim, Michael Lisby, Anna Malkova

Functional Genomics

18 Citations (Scopus)

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Original language	English
Journal	Microbial Cell Factories
Volume	6
Issue number	1
Pages (from-to)	1-64
ISSN	2311-2638
DOIs	https://doi.org/10.15698/mic2019.01.664
Publication status	Published - Jan 2019

Keywords

chromatin dynamics
chromosome rearrangements
crossovers
DNA breaks
DNA repair centers
DNA resection
DSBs
gene amplification
gene conversion
genome instability
gross chromosome rearrangements
fluorescent proteins
Holliday junctions
homologous recombination
mitotic recombination
mutagenesis
pulsed field gel electrophoresis
R-loops
single-particle tracking
replication fork stalling
sister repetitive sequences
sister chromatid recombination
site-specific chromosome breaks
toxic recombination intermediates
yeast artificial chromosome

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Guidelines for DNA recombination and repair studiesFinal published version, 3.56 MBLicence: CC BY

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Klein, H. L., Bacinskaja, G., Che, J., Cheblal, A., Elango, R., Epshtein, A., Fitzgerald, D. M., Gómez-González, B., Khan, S. R., Kumar, S., Leland, B. A., Marie, L., Mei, Q., Miné-Hattab, J., Piotrowska, A., Polleys, E. J., Putnam, C. D., Radchenko, E. A., Saada, A. A., ... Malkova, A. (2019). Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways. Microbial Cell Factories, 6(1), 1-64. https://doi.org/10.15698/mic2019.01.664

Klein, HL, Bacinskaja, G, Che, J, Cheblal, A, Elango, R, Epshtein, A, Fitzgerald, DM, Gómez-González, B, Khan, SR, Kumar, S, Leland, BA, Marie, L, Mei, Q, Miné-Hattab, J, Piotrowska, A, Polleys, EJ, Putnam, CD, Radchenko, EA, Saada, AA, Sakofsky, CJ, Shim, EY, Stracy, M, Xia, J, Yan, Z, Yin, Y, Aguilera, A, Argueso, JL, Freudenreich, CH, Gasser, SM, Gordenin, DA, Haber, JE, Ira, G, Jinks-Robertson, S, King, MC, Kolodner, RD, Kuzminov, A, Lambert, SAE, Lee, SE, Miller, KM, Mirkin, SM, Petes, TD, Rosenberg, SM, Rothstein, R, Symington, LS, Zawadzki, P, Kim, N, Lisby, M & Malkova, A 2019, 'Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways', Microbial Cell Factories, vol. 6, no. 1, pp. 1-64. https://doi.org/10.15698/mic2019.01.664

@article{a58df9609b4d4362837c77a5dfdd62f8,

title = "Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways",

keywords = "chromatin dynamics, chromosome rearrangements, crossovers, DNA breaks, DNA repair centers, DNA resection, DSBs, gene amplification, gene conversion, genome instability, gross chromosome rearrangements, fluorescent proteins, Holliday junctions, homologous recombination, mitotic recombination, mutagenesis, pulsed field gel electrophoresis, R-loops, single-particle tracking, replication fork stalling, sister repetitive sequences, sister chromatid recombination, site-specific chromosome breaks, toxic recombination intermediates, yeast artificial chromosome",

author = "Klein, {Hannah L.} and Giedre Bacinskaja and Jun Che and Anais Cheblal and Rajula Elango and Anastasiya Epshtein and Fitzgerald, {Devon M.} and Bel{\'e}n G{\'o}mez-Gonz{\'a}lez and Khan, {Sharik R.} and Sandeep Kumar and Leland, {Bryan A.} and L{\'e}a Marie and Qian Mei and Judith Min{\'e}-Hattab and Alicja Piotrowska and Polleys, {Erica J.} and Putnam, {Christopher D.} and Radchenko, {Elina A.} and Saada, {Anissia Ait} and Sakofsky, {Cynthia J.} and Shim, {Eun Yong} and Mathew Stracy and Jun Xia and Zhenxin Yan and Yi Yin and Andres Aguilera and Argueso, {Juan Lucas} and Freudenreich, {Catherine H.} and Gasser, {Susan M.} and Gordenin, {Dmitry A.} and Haber, {James E} and Grzegorz Ira and Sue Jinks-Robertson and King, {Megan C.} and Kolodner, {Richard D.} and Andrei Kuzminov and Lambert, {Sarah A. E.} and Lee, {Sang Eun} and Miller, {Kyle M.} and Mirkin, {Sergei M.} and Petes, {Thomas D.} and Rosenberg, {Susan M.} and Rodney Rothstein and Symington, {Lorraine S.} and Pawel Zawadzki and Nayun Kim and Michael Lisby and Anna Malkova",

year = "2019",

month = jan,

doi = "10.15698/mic2019.01.664",

language = "English",

volume = "6",

pages = "1--64",

journal = "Microbial Cell Factories",

issn = "2311-2638",

publisher = "BioMed Central",

number = "1",

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TY - JOUR

T1 - Guidelines for DNA recombination and repair studies

T2 - cellular assays of DNA repair pathways

AU - Klein, Hannah L.

AU - Bacinskaja, Giedre

AU - Che, Jun

AU - Cheblal, Anais

AU - Elango, Rajula

AU - Epshtein, Anastasiya

AU - Fitzgerald, Devon M.

AU - Gómez-González, Belén

AU - Khan, Sharik R.

AU - Kumar, Sandeep

AU - Leland, Bryan A.

AU - Marie, Léa

AU - Mei, Qian

AU - Miné-Hattab, Judith

AU - Piotrowska, Alicja

AU - Polleys, Erica J.

AU - Putnam, Christopher D.

AU - Radchenko, Elina A.

AU - Saada, Anissia Ait

AU - Sakofsky, Cynthia J.

AU - Shim, Eun Yong

AU - Stracy, Mathew

AU - Xia, Jun

AU - Yan, Zhenxin

AU - Yin, Yi

AU - Aguilera, Andres

AU - Argueso, Juan Lucas

AU - Freudenreich, Catherine H.

AU - Gasser, Susan M.

AU - Gordenin, Dmitry A.

AU - Haber, James E

AU - Ira, Grzegorz

AU - Jinks-Robertson, Sue

AU - King, Megan C.

AU - Kolodner, Richard D.

AU - Kuzminov, Andrei

AU - Lambert, Sarah A. E.

AU - Lee, Sang Eun

AU - Miller, Kyle M.

AU - Mirkin, Sergei M.

AU - Petes, Thomas D.

AU - Rosenberg, Susan M.

AU - Rothstein, Rodney

AU - Symington, Lorraine S.

AU - Zawadzki, Pawel

AU - Kim, Nayun

AU - Lisby, Michael

AU - Malkova, Anna

PY - 2019/1

Y1 - 2019/1

KW - chromatin dynamics

KW - chromosome rearrangements

KW - crossovers

KW - DNA breaks

KW - DNA repair centers

KW - DNA resection

KW - DSBs

KW - gene amplification

KW - gene conversion

KW - genome instability

KW - gross chromosome rearrangements

KW - fluorescent proteins

KW - Holliday junctions

KW - homologous recombination

KW - mitotic recombination

KW - mutagenesis

KW - pulsed field gel electrophoresis

KW - R-loops

KW - single-particle tracking

KW - replication fork stalling

KW - sister repetitive sequences

KW - sister chromatid recombination

KW - site-specific chromosome breaks

KW - toxic recombination intermediates

KW - yeast artificial chromosome

U2 - 10.15698/mic2019.01.664

DO - 10.15698/mic2019.01.664

M3 - Review

C2 - 30652105

SN - 2311-2638

VL - 6

SP - 1

EP - 64

JO - Microbial Cell Factories

JF - Microbial Cell Factories

IS - 1

ER -

Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways

Keywords

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