Glycine Perturbs Local and Global Conformational Flexibility of a Transmembrane Helix

Philipp Högel; Alexander Götz; Felix Kuhne; Maximilian Ebert; Walter Stelzer; Kasper D Rand; Christina Scharnagl; Dieter Langosch

doi:10.1021/acs.biochem.7b01197

Glycine Perturbs Local and Global Conformational Flexibility of a Transmembrane Helix

Philipp Högel, Alexander Götz, Felix Kuhne, Maximilian Ebert, Walter Stelzer, Kasper D Rand, Christina Scharnagl, Dieter Langosch

13 Citations (Scopus)

Abstract

Flexible transmembrane helices frequently support the conformational transitions between different functional states of membrane proteins. While proline is well known to distort and destabilize transmembrane helices, the role of glycine is still debated. Here, we systematically investigated the effect of glycine on transmembrane helix flexibility by placing it at different sites within the otherwise uniform leucine/valine repeat sequence of the LV16 model helix. We show that amide deuterium/hydrogen exchange kinetics are increased near glycine. Molecular dynamics simulations reproduce the measured exchange kinetics and reveal, at atomic resolution, a severe packing defect at glycine that enhances local hydration. Furthermore, glycine alters H-bond occupancies and triggers a redistribution of α-helical and 310-helical H-bonds. These effects facilitate local helix bending at the glycine site and change the collective dynamics of the helix.

Original language	English
Journal	Biochemistry
Volume	57
Issue number	8
Pages (from-to)	1326-1337
Number of pages	12
ISSN	0006-2960
DOIs	https://doi.org/10.1021/acs.biochem.7b01197
Publication status	Published - 27 Feb 2018

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title = "Glycine Perturbs Local and Global Conformational Flexibility of a Transmembrane Helix",

abstract = "Flexible transmembrane helices frequently support the conformational transitions between different functional states of membrane proteins. While proline is well known to distort and destabilize transmembrane helices, the role of glycine is still debated. Here, we systematically investigated the effect of glycine on transmembrane helix flexibility by placing it at different sites within the otherwise uniform leucine/valine repeat sequence of the LV16 model helix. We show that amide deuterium/hydrogen exchange kinetics are increased near glycine. Molecular dynamics simulations reproduce the measured exchange kinetics and reveal, at atomic resolution, a severe packing defect at glycine that enhances local hydration. Furthermore, glycine alters H-bond occupancies and triggers a redistribution of α-helical and 310-helical H-bonds. These effects facilitate local helix bending at the glycine site and change the collective dynamics of the helix.",

author = "Philipp H{\"o}gel and Alexander G{\"o}tz and Felix Kuhne and Maximilian Ebert and Walter Stelzer and Rand, {Kasper D} and Christina Scharnagl and Dieter Langosch",

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T1 - Glycine Perturbs Local and Global Conformational Flexibility of a Transmembrane Helix

AU - Högel, Philipp

AU - Götz, Alexander

AU - Kuhne, Felix

AU - Ebert, Maximilian

AU - Stelzer, Walter

AU - Rand, Kasper D

AU - Scharnagl, Christina

AU - Langosch, Dieter

PY - 2018/2/27

Y1 - 2018/2/27

N2 - Flexible transmembrane helices frequently support the conformational transitions between different functional states of membrane proteins. While proline is well known to distort and destabilize transmembrane helices, the role of glycine is still debated. Here, we systematically investigated the effect of glycine on transmembrane helix flexibility by placing it at different sites within the otherwise uniform leucine/valine repeat sequence of the LV16 model helix. We show that amide deuterium/hydrogen exchange kinetics are increased near glycine. Molecular dynamics simulations reproduce the measured exchange kinetics and reveal, at atomic resolution, a severe packing defect at glycine that enhances local hydration. Furthermore, glycine alters H-bond occupancies and triggers a redistribution of α-helical and 310-helical H-bonds. These effects facilitate local helix bending at the glycine site and change the collective dynamics of the helix.

AB - Flexible transmembrane helices frequently support the conformational transitions between different functional states of membrane proteins. While proline is well known to distort and destabilize transmembrane helices, the role of glycine is still debated. Here, we systematically investigated the effect of glycine on transmembrane helix flexibility by placing it at different sites within the otherwise uniform leucine/valine repeat sequence of the LV16 model helix. We show that amide deuterium/hydrogen exchange kinetics are increased near glycine. Molecular dynamics simulations reproduce the measured exchange kinetics and reveal, at atomic resolution, a severe packing defect at glycine that enhances local hydration. Furthermore, glycine alters H-bond occupancies and triggers a redistribution of α-helical and 310-helical H-bonds. These effects facilitate local helix bending at the glycine site and change the collective dynamics of the helix.

U2 - 10.1021/acs.biochem.7b01197

DO - 10.1021/acs.biochem.7b01197

M3 - Journal article

C2 - 29389107

SN - 0006-2960

VL - 57

SP - 1326

EP - 1337

JO - Biochemistry

JF - Biochemistry

IS - 8

ER -

Glycine Perturbs Local and Global Conformational Flexibility of a Transmembrane Helix

Abstract

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