Kristian Ebbesen Hanghøj

Research output

Research output per year 2016 2016 2017 2018 2019 2019

• 13 Journal article
• 1 Ph.D. thesis
• 1 Review

Research output per year

Research output per year

Search results

• 2019

  DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage

  Hanghøj, K., Renaud, G., Albrechtsen, A. & Orlando, L., 1 Apr 2019, In: GigaScience. 8, 4, 6 p., giz025.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Methylation 100%
  • Ancient DNA 79%
  • Epigenome 77%
  • DNA 63%
  • DNA Damage 54%
  5 Citations (Scopus)

  15 Downloads (Pure)

• Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding

  Hanghøj, K., Moltke, I., Andersen, P. A., Manica, A. & Korneliussen, T. S., 1 May 2019, In: GigaScience. 8, 5, 9 p., giz034.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Inbreeding 100%
  • Licensure 76%
  • Statistics 54%
  • Genotype 50%
  • Throughput 48%
  11 Citations (Scopus)

  11 Downloads (Pure)

• Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

  Renaud, G., Hanghøj, K., Korneliussen, T. S., Willerslev, E. & Orlando, L., 10 Jul 2019, In: Genetics. 212, 3, p. 587-614 28 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Joints 100%
  • Genome 95%
  • Pan troglodytes 17%
  • Domestic Animals 17%
  • Genetic Variation 13%
  7 Citations (Scopus)

  32 Downloads (Pure)

• Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

  Fages, A., Hanghøj, K., Khan, N., Gaunitz, C., Seguin-Orlando, A., Leonardi, M., McCrory Constantz, C., Gamba, C., Al-Rasheid, K. A. S., Albizuri, S., Alfarhan, A. H., Allentoft, M., Alquraishi, S., Anthony, D., Baimukhanov, N., Barrett, J. H., Bayarsaikhan, J., Benecke, N., Bernáldez-Sánchez, E., Berrocal-Rangel, L., & 101 othersBiglari, F., Boessenkool, S., Boldgiv, B., Brem, G., Brown, D., Burger, J., Crubézy, E., Daugnora, L., Davoudi, H., de Barros Damgaard, P., de los Ángeles de Chorro y de Villa-Ceballos, M., Deschler-Erb, S., Detry, C., Dill, N., do Mar Oom, M., Dohr, A., Ellingvåg, S., Erdenebaatar, D., Fathi, H., Felkel, S., Fernández-Rodríguez, C., García-Viñas, E., Germonpré, M., Granado, J. D., Hallsson, J. H., Hemmer, H., Hofreiter, M., Kasparov, A., Khasanov, M., Khazaeli, R., Kosintsev, P., Kristiansen, K., Kubatbek, T., Kuderna, L., Kuznetsov, P., Laleh, H., Leonard, J. A., Lhuillier, J., Liesau von Lettow-Vorbeck, C., Logvin, A., Lõugas, L., Ludwig, A., Luis, C., Arruda, A. M., Marques-Bonet, T., Matoso Silva, R., Merz, V., Mijiddorj, E., Miller, B. K., Monchalov, O., Mohaseb, F. A., Morales, A., Nieto-Espinet, A., Nistelberger, H., Onar, V., Pálsdóttir, A. H., Pitulko, V., Pitskhelauri, K., Pruvost, M., Rajic Sikanjic, P., Rapan Papeša, A., Roslyakova, N., Sardari, A., Sauer, E., Schafberg, R., Scheu, A., Schibler, J., Schlumbaum, A., Serrand, N., Serres-Armero, A., Shapiro, B., Sheikhi Seno, S., Shevnina, I., Shidrang, S., Southon, J., Star, B., Sykes, N., Taheri, K., Taylor, W., Teegen, W. R., Trbojević Vukičević, T., Trixl, S., Tumen, D., Undrakhbold, S., Usmanova, E., Vahdati, A., Valenzuela-Lamas, S., Viegas, C., Wallner, B., Weinstock, J., Zaibert, V., Clavel, B., Lepetz, S., Mashkour, M., Helgason, A., Stefánsson, K., Barrey, E., Willerslev, E., Outram, A. K., Librado, P. & Orlando, L., 30 May 2019, In: Cell. 177, 6, p. 1419-1435.e31

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Horses 100%
  • Genome 71%
  • Domestication 66%
  • Civilization 59%
  • Genetic Variation 40%
  65 Citations (Scopus)
• 2018

  Ancient genomes revisit the ancestry of domestic and Przewalski's horses

  Gaunitz, C., Fages, A. A., Hanghøj, K. E., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I. J., Felkel, S., Bignon-Lau, O., Damgaard, P. D. B., Mittnik, A., Mohaseb, A. F., Davoudi, H., Alquraishi, S., Alfarhan, A. H., Al-Rasheid, K. A. S., Crubézy, E., Benecke, N., Olsen, S., & 27 othersBrown, D., Anthony, D., Massy, K., Pitulko, V., Kasparov, A., Brem, G., Hofreiter, M., Mukhtarova, G., Baimukhanov, N., Lõugas, L., Onar, V., Stockhammer, P. W., Krause, J., Boldgiv, B., Undrakhbold, S., Erdenebaatar, D., Lepetz, S., Mashkour, M., Ludwig, A., Wallner, B., Merz, V., Merz, I., Zaibert, V., Willerslev, E., Sanz, P. L., Outram, A. K. & Orlando, L. A. A., 2018, In: Science. 360, 6384, p. 111-114 4 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Horses 100%
  • Genome 71%
  • Domestication 18%
  • feral 18%
  • Grassland 16%
  101 Citations (Scopus)

• Genomic investigations of horse domestication using ancient DNA and a novel statistical method for epigenomic inference from ancient DNA sequencing data

  Hanghøj, K. E., 2018

  Research output: Book/Report › Ph.D. thesis

• Oral health status in historic population: Macroscopic and metagenomic evidence

  Willmann, C., Mata, X., Hanghoej, K., Tonasso, L., Tisseyre, L., Jeziorski, C., Cabot, E., Chevet, P., Crubézy, E., Orlando, L., Esclassan, R., Thèves, C. & Caramelli, D., May 2018, In: PLOS ONE. 13, 5, 18 p., e0196482.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • oral health 100%
  • Metagenomics 73%
  • health status 72%
  • Pathology 67%
  • pathology 65%
  7 Citations (Scopus)

  55 Downloads (Pure)
• 2017

  Combining bleach and mild predigestion improves ancient DNA recovery from bones

  Boessenkool, S., Hanghøj, K. E., Nistelberger, H. M., Der Sarkissian, C., Gondek, A. T., Orlando, L. A. A., Barrett, J. H. & Star, B., Jul 2017, In: Molecular Ecology Resources. 17, 4, p. 742–751 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Ancient DNA 100%
  • Libraries 55%
  • Size Distribution 54%
  • bones 53%
  • DNA 51%
  34 Citations (Scopus)

• fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample

  Jørsboe, E., Hanghøj, K. E. & Albrechtsen, A., 1 Oct 2017, In: Bioinformatics. 33, 19, p. 3148-3150 3 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Sequencing 100%
  • Principal Component Analysis 88%
  • Principal component analysis 78%
  • Proportion 74%
  • Genotype 65%
  11 Citations (Scopus)

• gargammel: a sequence simulator for ancient DNA

  Renaud, G., Hanghøj, K. E., Willerslev, E. & Orlando, L. A. A., 15 Feb 2017, In: Bioinformatics. 33, 4, p. 577-579 3 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Ancient DNA 100%
  • Simulator 80%
  • Fragmentation 78%
  • Damage 73%
  • DNA 64%
  28 Citations (Scopus)

  74 Downloads (Pure)
• 2016

  Clonal yeast biofilms can reap competitive advantages through cell differentiation without being obligatorily multicellular

  Regenberg, B., Hanghøj, K. E., Andersen, K. S. & Boomsma, J. J., 16 Nov 2016, In: Royal Society of London. Proceedings B. Biological Sciences. 283, 1842, 8 p., 20161303.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • biofilm 100%
  • cell differentiation 97%
  • yeast 96%
  • Biofilms 96%
  • Cell Differentiation 80%
  10 Citations (Scopus)

• Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

  Gamba, C., Hanghøj, K. E., Gaunitz, C., Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Bradley, D. G. & Orlando, L. A. A., 1 Mar 2016, In: Molecular Ecology Resources. 16, 2, p. 459-469 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Ancient DNA 100%
  • extraction method 66%
  • DNA 51%
  • Purification 28%
  • DNA Sequencing 25%
  81 Citations (Scopus)

• Fast, accurate and automatic ancient nucleosome and methylation maps with epiPALEOMIX

  Hanghøj, K. E., Seguin-Orlando, A., Schubert, M., Madsen, T., Pedersen, J. S., Willerslev, E. & Orlando, L. A. A., 1 Dec 2016, In: Molecular Biology and Evolution. 33, 12, p. 3284-3298 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • nucleosomes 100%
  • methylation 97%
  • Nucleosomes 95%
  • epigenetics 80%
  • Methylation 74%
  19 Citations (Scopus)

  380 Downloads (Pure)

• metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data

  Louvel, G., Der Sarkissian, C., Hanghøj, K. E. & Orlando, L. A. A., 1 Nov 2016, In: Molecular Ecology Resources. 16, 6, p. 1415-1427 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • DNA Sequencing 100%
  • Metagenomics 99%
  • high-throughput nucleotide sequencing 95%
  • Pipeline 93%
  • Firearms 91%
  23 Citations (Scopus)

• The evolutionary origin and genetic makeup of domestic horses

  Sanz, P. L., Fages, A. A., Gaunitz, C., Leonardi, M., Wagner, S., Khan, N., Hanghøj, K. E., Alquraishi, S. A., Alfarhan, A. H., Al-Rasheid, K. A., Der Sarkissian, C., Schubert, M. & Orlando, L. A. A., Oct 2016, In: Genetics. 204, 2, p. 423-434 12 p.

  Research output: Contribution to journal › Review › peer-review

  • Horses 100%
  • Domestic Animals 21%
  • Agriculture 20%
  • Goats 19%
  • Genomics 17%
  30 Citations (Scopus)