Kresten Lindorff-Larsen

Search results

• SAXS calculations for Refinement of 𝛼-synuclein ensembles against SAXS data: Comparison of force fields and methods

  Lindorff-Larsen, K. (Creator), Zenodo, 2021

  DOI: 10.5281/zenodo.4437444, https://zenodo.org/record/4437444

  Dataset

• CG model of liquid-liquid phase behaviour of IDPs

  Tesei, G. (Creator), Schulze, T. K. (Creator), Crehuet, R. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2021

  DOI: 10.5281/zenodo.5828163, https://zenodo.org/records/5828163

  Dataset

• Plumed files for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'

  Orioli, S. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2021

  DOI: 10.5281/zenodo.4733551, https://zenodo.org/record/4733551

  Dataset

• A coarse-grained model for disordered and multi-domain proteins

  Cao, F. (Creator), Bülow, S. V. (Creator), Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 16 Oct 2024

  DOI: 10.5281/zenodo.14276086, https://zenodo.org/records/14276086

  Dataset

• CALVADOS: Coarse-graining Approach to Liquid-liquid phase separation Via an Automated Data-driven Optimisation Scheme

  Tesei, G. (Creator), Schulze, T. K. (Creator), Crehuet, R. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 12 Sept 2024

  DOI: 10.5281/zenodo.13754000, https://zenodo.org/records/13754000

  Dataset

• FRETpredict

  Montepietra, D. (Creator), Tesei, G. (Creator), Martins, J. M. (Creator), Kunze, M. B. A. (Creator), Best, R. B. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.10371378, https://zenodo.org10371378

  Dataset

• Molecular simulations and pre-analyzed data for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'

  Orioli, S. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2021

  DOI: 10.5281/zenodo.4719711, https://zenodo.org/record/4719711

  Dataset

• CALVADOS: Coarse-graining Approach to Liquid-liquid phase separation Via an Automated Data-driven Optimisation Scheme

  Tesei, G. (Creator), Schulze, T. K. (Creator), Crehuet, R. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6914054, https://zenodo.org/records/6914054

  Dataset

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6901205, https://zenodo.org/record/6901205

  Dataset

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7727848, https://zenodo.org/record/7727848

  Dataset

• A coarse-grained model for disordered and multi-domain proteins

  Cao, F. (Creator), Bülow, S. V. (Creator), Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 5 Dec 2024

  DOI: 10.5281/zenodo.14282804, https://zenodo.org/records/14282804

  Dataset

• The mechanism of amyloid fibril growth from Φ-value analysis - data and analysis repository

  Buell, A. (Creator), Larsen, J. A. (Contributor), Barclay, A. (Contributor), Vettore, N. (Contributor), Klausen, L. K. (Contributor), Mangels, L. (Contributor), Coden, A. (Contributor), Schmit, J. D. (Contributor), Lindorff-Larsen, K. (Contributor) & Buell, A. K. (Contributor), Zenodo, 22 Nov 2024

  DOI: 10.5281/zenodo.14204396, https://zenodo.org/records/14204396

  Dataset

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 4 Sept 2024

  DOI: 10.5281/zenodo.13684962, https://zenodo.org/records/13684962

  Dataset

• Supporting data for transmembrane domain self association simulations in "Recalibration of protein interactions in Martini 3"

  Thomasen, F. E. (Creator), Skaalum, T. (Creator), Kumar, A. (Creator), Srinivasan, S. (Creator), Vanni, S. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 9 Apr 2024

  DOI: 10.5281/zenodo.10949496, https://zenodo.org/records/10949496

  Dataset

• 3x 1 µs all-atom MD trajectories; AMBER ff15ipq & SPC/Eb; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3991429, https://zenodo.org/record/3991429

  Dataset

• 5x 1 µs all-atom MD trajectories; AMBER ff99SB*-ILDN & TIP4P/2005; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3989057, https://zenodo.org/record/3989057

  Dataset

• 3x 5 µs all-atom MD trajectories; AMBER ff99SB*-ILDN & TIP4P/2005; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Creator), Orioli, S. (Creator), Harding-Larsen, D. (Creator), Hoffmann, F. (Creator), Gavrilov, Y. (Creator), Teilum, K. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3989044, https://zenodo.org/record/3989044

  Dataset

• Computational Studies of Substrate Transport and Specificity in a Phospholipid Flippase

  Wang, Y. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3911588, https://zenodo.org/record/3911588

  Dataset

• Ensembles for: Computing, Analyzing, and Comparing the Radius of Gyration and Hydrodynamic Radius in Conformational Ensembles of Intrinsically Disordered Proteins

  Lindorff-Larsen, K. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3964622, https://zenodo.org/record/3964622

  Dataset

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7749344, https://zenodo.org/records/7749344

  Dataset

• Predicting and interpreting large scale mutagenesis data using analyses of protein stability and conservation

  Høie, M. H. (Creator), Cagiada, M. (Creator), Frederiksen, A. H. B. (Creator), Stein, A. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2021

  DOI: 10.5281/zenodo.5647208, https://zenodo.org/record/5647208

  Dataset

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6815068, https://zenodo.org/record/6815068

  Dataset

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.7437501, https://zenodo.org/records/7437501

  Dataset

• Supporting data for "Recalibration of protein interactions in Martini 3"

  Thomasen, F. E. (Creator), Skaalum, T. (Creator), Kumar, A. (Creator), Srinivasan, S. (Creator), Vanni, S. (Creator) & Lindorff-Larsen, K. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.8010043, https://zenodo.org/records/8010043

  Dataset

• The mechanism of amyloid fibril growth from Φ-value analysis - data and analysis repository

  Buell, A. (Creator), Larsen, J. A. (Contributor), Barclay, A. (Contributor), Vettore, N. (Contributor), Klausen, L. K. (Contributor), Mangels, L. (Contributor), Coden, A. (Contributor), Schmit, J. D. (Contributor), Lindorff-Larsen, K. (Contributor) & Buell, A. K. (Contributor), Zenodo, 20 Sept 2024

  DOI: 10.5281/zenodo.11191318, https://zenodo.org/records/11191318

  Dataset