Kresten Lindorff-Larsen

Søgeresultater

• SAXS calculations for Refinement of 𝛼-synuclein ensembles against SAXS data: Comparison of force fields and methods

  Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2021

  DOI: 10.5281/zenodo.4437444, https://zenodo.org/record/4437444

  Datasæt

• CG model of liquid-liquid phase behaviour of IDPs

  Tesei, G. (Ophavsmand), Schulze, T. K. (Ophavsmand), Crehuet, R. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2021

  DOI: 10.5281/zenodo.5828163, https://zenodo.org/records/5828163

  Datasæt

• Plumed files for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'

  Orioli, S. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2021

  DOI: 10.5281/zenodo.4733551, https://zenodo.org/record/4733551

  Datasæt

• A coarse-grained model for disordered and multi-domain proteins

  Cao, F. (Ophavsmand), Bülow, S. V. (Ophavsmand), Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 16 okt. 2024

  DOI: 10.5281/zenodo.14276086, https://zenodo.org/records/14276086

  Datasæt

• CALVADOS: Coarse-graining Approach to Liquid-liquid phase separation Via an Automated Data-driven Optimisation Scheme

  Tesei, G. (Ophavsmand), Schulze, T. K. (Ophavsmand), Crehuet, R. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 12 sep. 2024

  DOI: 10.5281/zenodo.13754000, https://zenodo.org/records/13754000

  Datasæt

• FRETpredict

  Montepietra, D. (Ophavsmand), Tesei, G. (Ophavsmand), Martins, J. M. (Ophavsmand), Kunze, M. B. A. (Ophavsmand), Best, R. B. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2023

  DOI: 10.5281/zenodo.10371378, https://zenodo.org10371378

  Datasæt

• Molecular simulations and pre-analyzed data for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'

  Orioli, S. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2021

  DOI: 10.5281/zenodo.4719711, https://zenodo.org/record/4719711

  Datasæt

• CALVADOS: Coarse-graining Approach to Liquid-liquid phase separation Via an Automated Data-driven Optimisation Scheme

  Tesei, G. (Ophavsmand), Schulze, T. K. (Ophavsmand), Crehuet, R. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2022

  DOI: 10.5281/zenodo.6914054, https://zenodo.org/records/6914054

  Datasæt

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2022

  DOI: 10.5281/zenodo.6901205, https://zenodo.org/record/6901205

  Datasæt

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2023

  DOI: 10.5281/zenodo.7727848, https://zenodo.org/record/7727848

  Datasæt

• A coarse-grained model for disordered and multi-domain proteins

  Cao, F. (Ophavsmand), Bülow, S. V. (Ophavsmand), Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 5 dec. 2024

  DOI: 10.5281/zenodo.14282804, https://zenodo.org/records/14282804

  Datasæt

• The mechanism of amyloid fibril growth from Φ-value analysis - data and analysis repository

  Buell, A. (Ophavsmand), Larsen, J. A. (Bidrager), Barclay, A. (Bidrager), Vettore, N. (Bidrager), Klausen, L. K. (Bidrager), Mangels, L. (Bidrager), Coden, A. (Bidrager), Schmit, J. D. (Bidrager), Lindorff-Larsen, K. (Bidrager) & Buell, A. K. (Bidrager), Zenodo, 22 nov. 2024

  DOI: 10.5281/zenodo.14204396, https://zenodo.org/records/14204396

  Datasæt

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 4 sep. 2024

  DOI: 10.5281/zenodo.13684962, https://zenodo.org/records/13684962

  Datasæt

• Supporting data for transmembrane domain self association simulations in "Recalibration of protein interactions in Martini 3"

  Thomasen, F. E. (Ophavsmand), Skaalum, T. (Ophavsmand), Kumar, A. (Ophavsmand), Srinivasan, S. (Ophavsmand), Vanni, S. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 9 apr. 2024

  DOI: 10.5281/zenodo.10949496, https://zenodo.org/records/10949496

  Datasæt

• 3x 1 µs all-atom MD trajectories; AMBER ff15ipq & SPC/Eb; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Ophavsmand), Orioli, S. (Ophavsmand), Harding-Larsen, D. (Ophavsmand), Hoffmann, F. (Ophavsmand), Gavrilov, Y. (Ophavsmand), Teilum, K. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2020

  DOI: 10.5281/zenodo.3991429, https://zenodo.org/record/3991429

  Datasæt

• 5x 1 µs all-atom MD trajectories; AMBER ff99SB*-ILDN & TIP4P/2005; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Ophavsmand), Orioli, S. (Ophavsmand), Harding-Larsen, D. (Ophavsmand), Hoffmann, F. (Ophavsmand), Gavrilov, Y. (Ophavsmand), Teilum, K. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2020

  DOI: 10.5281/zenodo.3989057, https://zenodo.org/record/3989057

  Datasæt

• 3x 5 µs all-atom MD trajectories; AMBER ff99SB*-ILDN & TIP4P/2005; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

  Kümmerer, F. (Ophavsmand), Orioli, S. (Ophavsmand), Harding-Larsen, D. (Ophavsmand), Hoffmann, F. (Ophavsmand), Gavrilov, Y. (Ophavsmand), Teilum, K. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2020

  DOI: 10.5281/zenodo.3989044, https://zenodo.org/record/3989044

  Datasæt

• Computational Studies of Substrate Transport and Specificity in a Phospholipid Flippase

  Wang, Y. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2020

  DOI: 10.5281/zenodo.3911588, https://zenodo.org/record/3911588

  Datasæt

• Ensembles for: Computing, Analyzing, and Comparing the Radius of Gyration and Hydrodynamic Radius in Conformational Ensembles of Intrinsically Disordered Proteins

  Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2020

  DOI: 10.5281/zenodo.3964622, https://zenodo.org/record/3964622

  Datasæt

• Molecular simulations of the N-terminal domain of CPEB4

  Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2023

  DOI: 10.5281/zenodo.7749344, https://zenodo.org/records/7749344

  Datasæt

• Predicting and interpreting large scale mutagenesis data using analyses of protein stability and conservation

  Høie, M. H. (Ophavsmand), Cagiada, M. (Ophavsmand), Frederiksen, A. H. B. (Ophavsmand), Stein, A. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2021

  DOI: 10.5281/zenodo.5647208, https://zenodo.org/record/5647208

  Datasæt

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2022

  DOI: 10.5281/zenodo.6815068, https://zenodo.org/record/6815068

  Datasæt

• Improved Predictions of Phase Behaviour of IDPs by Tuning the Interaction Range

  Tesei, G. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2022

  DOI: 10.5281/zenodo.7437501, https://zenodo.org/records/7437501

  Datasæt

• Supporting data for "Recalibration of protein interactions in Martini 3"

  Thomasen, F. E. (Ophavsmand), Skaalum, T. (Ophavsmand), Kumar, A. (Ophavsmand), Srinivasan, S. (Ophavsmand), Vanni, S. (Ophavsmand) & Lindorff-Larsen, K. (Ophavsmand), Zenodo, 2023

  DOI: 10.5281/zenodo.8010043, https://zenodo.org/records/8010043

  Datasæt

• The mechanism of amyloid fibril growth from Φ-value analysis - data and analysis repository

  Buell, A. (Ophavsmand), Larsen, J. A. (Bidrager), Barclay, A. (Bidrager), Vettore, N. (Bidrager), Klausen, L. K. (Bidrager), Mangels, L. (Bidrager), Coden, A. (Bidrager), Schmit, J. D. (Bidrager), Lindorff-Larsen, K. (Bidrager) & Buell, A. K. (Bidrager), Zenodo, 20 sep. 2024

  DOI: 10.5281/zenodo.11191318, https://zenodo.org/records/11191318

  Datasæt