Research output per year
Research output per year
Personal profile
Short presentation
PhD in Data stratification and association discovery using Self-Organising Maps and Rule Mining.
MSc in Bioinformatics and Systems Biology.
Chair of the Scientific Organising Committee of ENABLE 2018.
Former member of the NNF-Center for Protein Research Student and Postdoc Association (SPA) representatives.
Knowledge of languages
Spanish: Mother language
English: Full professional proficiency
Primary fields of research
Data stratification
Association analysis
Fields of interest
Genomics
Machine Learning
Data Analysis
Education/Academic qualification
Instituto de Salud Carlos III
2014 → 2015
Award Date: 20 Feb 2016
External positions
Department of Growth and Reproduction, Rigshospitalet, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen
1 Jul 2018 → 1 Sept 2018
Keywords
- ???Bioinformatik???
- Bioinformatics
- Data analysis
- Clustering Analysis
Fingerprint
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men
Jiang, L., Audouze, K., Romero Herrera, J. A., Ängquist, L. H., Kjærulff, S. K., Izarzugaza, J. M. G., Tjønneland, A., Halkjær, J., Overvad, K., Sørensen, T. I. A. & Brunak, S., Jan 2020, In: Clinical Nutrition.Research output: Contribution to journal › Journal article › Research › peer-review
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Combing the Hairball: Improving Visualization of miRNA-Target Interaction Networks
Russo, F., Hu, J. X., Romero Herrera, J. A. & Brunak, S., 2019, MicroRNA Target Identification: Methods and Protocols. Laganà, A. (ed.). Humana Press, p. 279-289 11 p. (Methods in Molecular Biology, Vol. 1970).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
Asplund, M., Kjartansdóttir, K. R., Mollerup, S., Vinner, L., Fridholm, H., Herrera, J. A. R., Friis-Nielsen, J., Hansen, T. A., Jensen, R. H., Nielsen, I. B., Richter, S. R., Rey-Iglesia, A., Matey-Hernandez, M. L., Alquezar-Planas, D. E., Olsen, P. V. S., Sicheritz-Pontén, T., Willerslev, E., Lund, O., Brunak, S. & Mourier, T. & 3 others, , Oct 2019, In: Clinical Microbiology and Infection. 25, 10, p. 1277-1285Research output: Contribution to journal › Journal article › Research › peer-review
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High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Mollerup, S., Asplund, M., Friis-Nielsen, J., Kjartansdóttir, K. R., Fridholm, H., Hansen, T. A., Herrera, J. A. R., Barnes, C. J., Jensen, R. H., Richter, S. R., Nielsen, I. B., Pietroni, C., Alquezar-Planas, D. E., Rey-Iglesia, A., Olsen, P. V. S., Rajpert-De Meyts, E., Groth-Pedersen, L., von Buchwald, C., Jensen, D. H. & Gniadecki, R. & 20 others, , 13 Sept 2019, In: The Journal of Infectious Diseases. 220, 8, p. 1312-1324Research output: Contribution to journal › Journal article › Research › peer-review
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A Novel Familial Cardiac Arrhythmia Syndrome with Widespread ST-Segment Depression
Bundgård, H., Jøns, C., Lodder, E. M., Izarzugaza, J. M. G., Romero Herrera, J. A., Pehrson, S., Tfelt-Hansen, J., Ahlberg, G., Olesen, M. S., Holst, A. G., Wellens, H., de Villiers, C., Hastings, R., Stuart, G., Brunak, S., Wilde, A. A. M., Watkins, H. & Christensen, A. H., 1 Nov 2018, In: The New England Journal of Medicine. 379, 18, p. 1780-1781 2 p.Research output: Contribution to journal › Comment/debate › Research
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Cutavirus in cutaneous malignant melanoma
Mollerup, S., Fridholm, E. M. H., Vinner, L., Kjartansdóttir, K. R., Friis-Nielsen, J., Asplund, M., Romero, J. A. H., Steiniche, T., Mourier, T., Brunak, S., Willerslev, E., Izarzugaza, J. M. G., Hansen, A. J. & Nielsen, L. P., Feb 2017, In: Emerging Infectious Diseases . 23, 2, p. 363-365 3 p.Research output: Contribution to journal › Letter › peer-review
Datasets
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Introduction to bulk RNAseq analysis
Herrera, J. A. R. (Creator), Zenodo, 2022
DOI: 10.5281/zenodo.7116371, https://zenodo.org/record/7116371
Dataset
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Introduction to bulk RNAseq analysis: supplementary material
Herrera, J. A. R. (Creator), Terkelsen, T. B. (Contributor), Zschach, H. (Contributor), Kalvisa, A. (Contributor), Refoyo-Martínez, A. (Contributor) & Andrajeva, D. (Contributor), Zenodo, 18 Jun 2024
DOI: 10.5281/zenodo.12090853, https://zenodo.org/records/12090853
Dataset
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Introduction to bulk RNAseq analysis: supplementary material
Herrera, J. A. R. (Creator), Zschach, H. (Contributor), Terkelsen, T. B. (Contributor), Andrajeva, D. (Contributor) & Kalvisa, A. (Contributor), Zenodo, 6 Nov 2023
DOI: 10.5281/zenodo.10075313, https://zenodo.org10075313
Dataset
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Introduction to bulk RNAseq analysis
Herrera, J. A. R. (Creator), Zschach, H. (Contributor), Terkelsen, T. B. (Contributor), Andrajeva, D. (Contributor) & Kalvisa, A. (Contributor), Zenodo, 2023
DOI: 10.5281/zenodo.7462592, https://zenodo.org/record/7462592
Dataset
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Introduction to bulk RNAseq analysis: supplementary material
Herrera, J. A. R. (Creator), Zschach, H. (Contributor), Terkelsen, T. B. (Contributor), Andrajeva, D. (Contributor) & Kalvisa, A. (Contributor), Zenodo, 2023
DOI: 10.5281/zenodo.7802718, https://zenodo.org/record/7802718
Dataset
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Introduction to bulk RNAseq analysis: supplementary material
Herrera, J. A. R. (Creator), Zschach, H. (Contributor), Terkelsen, T. B. (Contributor), Andrajeva, D. (Contributor) & Kalvisa, A. (Contributor), Zenodo, 2023
DOI: 10.5281/zenodo.8046218, https://zenodo.org/record/8046218
Dataset
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Introduction to bulk RNAseq analysis: supplementary material
Herrera, J. A. R. (Creator), Zschach, H. (Contributor), Terkelsen, T. B. (Contributor), Andrajeva, D. (Contributor), Kalvisa, A. (Contributor) & Refoyo-Martínez, A. (Contributor), Zenodo, 2024
DOI: 10.5281/zenodo.11909973, https://zenodo.org/records/11909973
Dataset
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Introduction to bulk RNAseq analysis: supplementary material
Herrera, J. A. R. (Creator), Zschach, H. (Contributor), Terkelsen, T. B. (Contributor), Andrajeva, D. (Contributor) & Kalvisa, A. (Contributor), Zenodo, 28 Nov 2023
DOI: 10.5281/zenodo.10211512, https://zenodo.org10211512
Dataset