Jeppe Vinther

Phone+4522840780
Emailjvintherbio.kudk
Websitehttp://www1.bio.ku.dk/english/research/bi/rna_biologi/vinther/, https://www1.bio.ku.dk/english/research/bi/rna_biologi/vinther/

Ole Maaløes Vej 5, 2200 København N., 04 Bygning 4, 04-1-27

Research activity per year

CV

Current position

Associate professor
Department of Biology, University of Copenhagen
Ole Maaløes Vej 5, room 3.1.11,
DK-2200 København N
Phone: +45 35321264
Email: [email protected]

Personal information

Born on: 22/4 1973
Nationality: Danish
Married with two children.

Research Interest

I am interested in the mechanisms of gene regulation, especially the functional roles of RNA that do not depend on the RNA being translated into protein. Currently, I focus on developing sequencing based methods that will improve the prediction of RNA structure and accessibility.

Research and Teaching Experience

2011-current
Associate Professor, Groupleader, Department of Biology, University of Copenhagen

2008-11
Assistant professor, Groupleader, Department of Biology, University of Copenhagen

2006-07
Groupleader, Molecular Evolution Group, Department of Molecular Biology, University of Copenhagen, Denmark. Organizer of the course: Molecular Evolution, Faculty of Natural Sciences.

2005-06
Postdoc, Molecular Evolution Group, Department of Molecular Biology, University of Copenhagen, Denmark.

2004-05
Visiting Scientist, Galloway Lab, Program in Cancer Biology, Fred Hutchinsons Cancer Research Center, Seattle, US.

2003-04
Postdoc, Protein Laboratory, Institute of Molecular Pathology, University of Copenhagen, Denmark.

1999-02
PhD and MSc Student, Protein Laboratory, Institute of Molecular Pathology, University of Copenhagen, Denmark. Teacher on the practical course: Cell Biology and Protein Purification, Human Biology, Faculty of Health Science

Education

2007
EMBO Lab Management Course

2003
PhD in Human Biology, University of Copenhagen, Denmark. Integrated PhD program (Human Biology), Scholarship from Faculty of Health Science, University of Copenhagen

2000
MSc in Human Biology, University of Copenhagen, Denmark.

1997-99
Human Biology, Faculty of Health Science, University of Copenhagen, Denmark.

1993-97
Undergraduate Studies, Technical University of Denmark, Copenhagen.

Primary fields of research

miRNA target determinants

Export of miRNA precursors

RNA-protein interactions

Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

Keywords

Faculty of Science
Molecular Biology
micro RNA

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6 Similar Profiles

30 Journal article
2 Book chapter

Detection of internal N7-methylguanosine (m⁷G) RNA modifications by mutational profiling sequencing
Enroth, C., Poulsen, L. D., Iversen, S., Kirpekar, F., Albrechtsen, A. & Vinther, J., 18 Nov 2019, In: Nucleic Acids Research. 47, 20, 13 p., e126.
Research output: Contribution to journal › Journal article › Research › peer-review
4 Downloads (Pure)
Excess primer degradation by Exo I improves the preparation of 3' cDNA ligation-based sequencing libraries
Enroth, C. H., Fehler, A. O., Poulsen, L. D. & Vinther, J., 2019, In: BioTechniques. 67, 3, p. 110-116
Research output: Contribution to journal › Journal article › Research › peer-review
12 Downloads (Pure)
RNA-Seq for Bacterial Gene Expression
Poulsen, L. D. & Vinther, J., 2018, In: Current Protocols in Nucleic Acid Chemistry. 73, 1, p. 1-12 e55.
Research output: Contribution to journal › Journal article › Research › peer-review
5 Citations (Scopus)
RNase H sequence preferences influence antisense oligonucleotide efficiency
Kiełpiński, Ł. J., Hagedorn, P. H., Lindow, M. & Vinther, J., 15 Dec 2017, In: Nucleic Acids Research. 45, 22, p. 12932-12944 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
20 Citations (Scopus)

44 Downloads (Pure)
Effect of chronic uremia on the transcriptional profile of the calcified aorta analyzed by RNA sequencing
Rukov, J. L., Gravesen, E., Mace, M. L., Hofman-Bang, J., Vinther, J., Andersen, C. B., Lewin, E. & Ølgaard, K., 15 Mar 2016, In: American Journal of Physiology: Renal Physiology. 310, 6, p. F477-F491 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
27 Citations (Scopus)
Dissecting the target specificity of RNase H recruiting oligonucleotides using massively parallel reporter analysis of short RNA motifs
Rukov, J. L., Hagedorn, P. H., Høy, I. B., Feng, Y., Lindow, M. & Vinther, J., 30 Sept 2015, In: Nucleic Acids Research. 43, 17, p. 8476-8487 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
5 Citations (Scopus)

72 Downloads (Pure)
Reproducible analysis of sequencing-based RNA structure probing data with user-friendly tools
Kielpinski, L. J., Sidiropoulos, N. & Vinther, J., 2015, Structures of large RNA molecules and their complexes. Woodson, S. A. & Allain, F. H. T. (eds.). Elsevier, p. 153-180 28 p. (Methods in Enzymology, Vol. 558).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
7 Citations (Scopus)
SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data
Poulsen, L. D., Kielpinski, L. J., Salama, S. R., Krogh, A. & Vinther, J., 1 May 2015, In: R N A. 21, 5, p. 1042-1052 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
24 Citations (Scopus)

134 Downloads (Pure)