Research output per year
Research output per year
Personal profile
Short presentation
Investigating nature. My main interest is to find patterns in a large variety of biological systems, extract parameters and and create computer models to understand the systems. I mainly work with epidemiological methods, including estimation of transmission rates, simulation of disease outbreaks in different populations. This often includes bioeconomic modeling of the consequences and control scenarios for disease outbreaks. I also have a passion for building bridges between research areas, merging different disciplines into new methods for biological discoveries. My main research interests include epidemiology, (lidar) entomology, amphibians, evolutionary and general biology.
Short presentation
Investigating nature. My main interest is to find patterns in a large variety of biological systems, extract parameters and and create computer models to understand the systems. I mainly work with epidemiological methods, including estimation of transmission rates, simulation of disease outbreaks in different populations. This often includes bioeconomic modeling of the consequences and control scenarios for disease outbreaks. I also have a passion for building bridges between research areas, merging different disciplines into new methods for biological discoveries. My main research interests include epidemiology, (lidar) entomology, amphibians, evolutionary and general biology.
Check out some of my R Shiny apps:
https://ucphepi.shinyapps.io/R0_v2/
https://ucphepi.shinyapps.io/fetus_age_estimation/
https://ucphepi.shinyapps.io/stopmast_example/
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Dive into the research topics where Carsten Kirkeby is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Differential somatic cell count as an additional indicator for intramammary infections in dairy cows
Kirkeby, C., Toft, N., Schwarz, D., Farre, M., Nielsen, S. S., Zervens, L., Hechinger, S. & Halasa, T., Feb 2020, In: Journal of Dairy Science.Research output: Contribution to journal › Journal article › Research › peer-review
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A cohort study of the effect of Streptococcus agalactiae on milk yield and somatic cell count in Norwegian dairy cows
Holmøy, I. H., Toftaker, I., Kirkeby, C., Østerås, O., Jørgensen, H. J. & Nødtvedt, A., Sept 2019, In: Journal of Dairy Science. 102, 9, p. 8385-8399Research output: Contribution to journal › Journal article › Research › peer-review
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Associations between udder health and culling in dairy cows
Gussmann, M., Denwood, M., Kirkeby, C., Farre, M. & Halasa, T., 2019, In: Preventive Veterinary Medicine. 171, 104751.Research output: Contribution to journal › Journal article › Research › peer-review
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Brug beslutningstræet til at vælge den rigtige behandling af mastitis: Når der tages beslutninger om klinisk og subklinisk mastitis, er det væsentligt for behandlingens effekt, smittespredning og økonomi. Beslutningstræet viser, hvad simuleringsmodeller foreslår som det bedste.
Gussmann, M. K., Halasa, T., Kirkeby, C. T. & Nielsen, S. S., 8 Mar 2019, 2 p. Landbrug og fødevarer SEGES.Research output: Other contribution › Net publication - Internet publication › Communication
9 Downloads (Pure) -
Composite or aseptic quarter milk samples: Sensitivity and specificity of PCR and bacterial culture of Staphylococcus aureus based on Bayesian latent class evaluation
Toft, N., Halasa, T., Nielsen, S. S., Hechinger, S., Zervens, L. M., Schwarz, D. & Kirkeby, C., 1 Nov 2019, In: Preventive Veterinary Medicine. 104689.Research output: Contribution to journal › Journal article › Research › peer-review
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Danske præciseringer af internationale mastitisanbefalinger. De internationale mastitisanbefalinger består af 10 punkter, hvor nogle nu kan præciseres for danske forhold baseret på resultaterne fra STOPMAST projektet
Nielsen, S. S., Krogh, M. A., Kirkeby, C. T., Østergaard, S. & Halasa, T., 14 Mar 2019, 3 p. www.landbrugsinfo.dk : Landbrug og fødevarer SEGES.Research output: Other contribution › Net publication - Internet publication › Communication
12 Downloads (Pure) -
Differential Somatic Cell Count (DSCC) for Detecting Intra-mammary Infections
Kirkeby, C. T., 29 Jan 2019.Research output: Contribution to conference › Poster › Research › peer-review
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Differential Somatic Cell Count (DSCC) for Detecting Intra-mammary Infections
Kirkeby, C. T., 27 Mar 2019.Research output: Contribution to conference › Poster › Research
Activities
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Photonic classification of pests
Kirkeby, C. (Other)
13 Dec 2019Activity: Talk or presentation types › Lecture and oral contribution
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Forskning og formidling
Kirkeby, C. (Other)
10 Sept 2019Activity: Talk or presentation types › Lecture and oral contribution
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Introduction to Modelling of Disease Spread and Control
Kirkeby, C. (Organizer) & Halasa, T. (Organizer)
24 Jun 2019 → 28 Jun 2019Activity: Participating in or organising an event types › Participation in workshop, seminar, course
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Modelling economical impact of disease in animal husbandr
Kirkeby, C. (Other)
28 May 2019Activity: Talk or presentation types › Lecture and oral contribution
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Sensitivity and Specificity of PCR and Bacterial Culture of S. aureus based on Bayesian LCA
Kirkeby, C. (Other)
16 May 2019Activity: Talk or presentation types › Lecture and oral contribution
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Cost effectiveness and mastitis intervention
Kirkeby, C. (Participant)
14 May 2019Activity: Participating in or organising an event types › Organisation of and participation in conference
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IDF mastitis conference 2019
Kirkeby, C. (Organizer)
14 May 2019 → 16 May 2019Activity: Participating in or organising an event types › Organisation of and participation in conference
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Differential Cell Count (DSCC) for indicating Intramammary Infections in Dairy cows
Kirkeby, C. (Other)
11 Apr 2019Activity: Talk or presentation types › Lecture and oral contribution
Prizes
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Partnership Collaboration Award
Kirkeby, C. (Recipient), 14 Dec 2018
Prize: Prizes, scholarships, distinctions
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Partnership Collaboration Award
Kirkeby, C. (Recipient), 14 Dec 2019
Prize: Prizes, scholarships, distinctions
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EDENext 2013 3rd prize PhD award
Kirkeby, C. T. (Recipient), 2013
Prize: Prizes, scholarships, distinctions
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Datasets
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Supplementary material - Woudstra et al., 2023: Strain diversity and infection durations of Staphylococcus spp. and Streptococcus spp. causing intramammary infections in dairy cows
Woudstra, S. (Creator), Wente, N. (Creator), Zhang, Y. (Creator), Leimbach, S. (Creator), Gussmann, M. (Creator), Kirkeby, C. (Creator) & Krömker, V. (Creator), Zenodo, 2023
DOI: 10.5281/zenodo.7785231, https://zenodo.org/records/7785231
Dataset
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Protocol for a case-control study on risk factors for introduction of highly pathogenic avian influenza into holdings with poultry and other captive birds in Denmark
Jensen, H. A. (Creator), Boklund, A. E. (Creator), Kirkeby, C. T. (Creator), Kjær, L. J. (Creator), Hjulsager, C. K. (Creator), Larsen, L. E. (Creator) & Nielsen, S. S. (Creator), Zenodo, 15 Dec 2023
DOI: 10.5281/zenodo.10376775, https://zenodo.org/records/10376775
Dataset