Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

Daniel I. Speiser; M. Sabrina Pankey; Alexander K. Zaharoff; Barbara A. Battelle; Heather D. Bracken-Grissom; Jesse W. Breinholt; Seth M. Bybee; Thomas W. Cronin; Anders Lydik Garm; Annie R. Lindgren; Nipam H. Patel; Megan L. Porter; Meredith E. Protas; Ajna S. Rivera; Jeanne M. Serb; Kirk S. Zigler; Keith A. Crandall; Todd H. Oakley

doi:10.1186/s12859-014-0350-x

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

Daniel I. Speiser, M. Sabrina Pankey, Alexander K. Zaharoff, Barbara A. Battelle, Heather D. Bracken-Grissom, Jesse W. Breinholt, Seth M. Bybee, Thomas W. Cronin, Anders Lydik Garm, Annie R. Lindgren, Nipam H. Patel, Megan L. Porter, Meredith E. Protas, Ajna S. Rivera, Jeanne M. Serb, Kirk S. Zigler, Keith A. Crandall, Todd H. Oakley

Marine Biological Section

43 Citationer (Scopus)

333 Downloads (Pure)

Originalsprog	Engelsk
Artikelnummer	350
Tidsskrift	B M C Bioinformatics
Vol/bind	15
Antal sider	12
ISSN	1471-2105
DOI	https://doi.org/10.1186/s12859-014-0350-x
Status	Udgivet - 19 nov. 2014

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10.1186/s12859-014-0350-x

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organismsForlagets udgivne version, 925 KB

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Speiser, D. I., Pankey, M. S., Zaharoff, A. K., Battelle, B. A., Bracken-Grissom, H. D., Breinholt, J. W., Bybee, S. M., Cronin, T. W., Garm, A. L., Lindgren, A. R., Patel, N. H., Porter, M. L., Protas, M. E., Rivera, A. S., Serb, J. M., Zigler, K. S., Crandall, K. A., & Oakley, T. H. (2014). Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. B M C Bioinformatics, 15, Artikel 350. https://doi.org/10.1186/s12859-014-0350-x

Speiser, DI, Pankey, MS, Zaharoff, AK, Battelle, BA, Bracken-Grissom, HD, Breinholt, JW, Bybee, SM, Cronin, TW, Garm, AL, Lindgren, AR, Patel, NH, Porter, ML, Protas, ME, Rivera, AS, Serb, JM, Zigler, KS, Crandall, KA & Oakley, TH 2014, 'Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms', B M C Bioinformatics, bind 15, 350. https://doi.org/10.1186/s12859-014-0350-x

@article{86f239a147594b56847698f7dbc4fe6e,

title = "Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms",

keywords = "Bioinformatics, Eyes, Evolution, Galaxy, Next-generation sequence analysis, Orthology, Phototransduction, Transcriptomes, Vision",

author = "Speiser, {Daniel I.} and Pankey, {M. Sabrina} and Zaharoff, {Alexander K.} and Battelle, {Barbara A.} and Bracken-Grissom, {Heather D.} and Breinholt, {Jesse W.} and Bybee, {Seth M.} and Cronin, {Thomas W.} and Garm, {Anders Lydik} and Lindgren, {Annie R.} and Patel, {Nipam H.} and Porter, {Megan L.} and Protas, {Meredith E.} and Rivera, {Ajna S.} and Serb, {Jeanne M.} and Zigler, {Kirk S.} and Crandall, {Keith A.} and Oakley, {Todd H.}",

year = "2014",

month = nov,

day = "19",

doi = "10.1186/s12859-014-0350-x",

language = "English",

volume = "15",

journal = "B M C Bioinformatics",

issn = "1471-2105",

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T1 - Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

AU - Speiser, Daniel I.

AU - Pankey, M. Sabrina

AU - Zaharoff, Alexander K.

AU - Battelle, Barbara A.

AU - Bracken-Grissom, Heather D.

AU - Breinholt, Jesse W.

AU - Bybee, Seth M.

AU - Cronin, Thomas W.

AU - Garm, Anders Lydik

AU - Lindgren, Annie R.

AU - Patel, Nipam H.

AU - Porter, Megan L.

AU - Protas, Meredith E.

AU - Rivera, Ajna S.

AU - Serb, Jeanne M.

AU - Zigler, Kirk S.

AU - Crandall, Keith A.

AU - Oakley, Todd H.

PY - 2014/11/19

Y1 - 2014/11/19

KW - Bioinformatics

KW - Eyes

KW - Evolution

KW - Galaxy

KW - Next-generation sequence analysis

KW - Orthology

KW - Phototransduction

KW - Transcriptomes

KW - Vision

U2 - 10.1186/s12859-014-0350-x

DO - 10.1186/s12859-014-0350-x

M3 - Journal article

C2 - 25407802

SN - 1471-2105

VL - 15

JO - B M C Bioinformatics

JF - B M C Bioinformatics

M1 - 350

ER -

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

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