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Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities
Daniel Sundfeld
*
, George Teodoro,
Jakob H. Havgaard
,
Jan Gorodkin
, Alba C.M.A. Melo
*
Corresponding author af dette arbejde
3
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Keyphrases
Alignment Problem
20%
Computationally Expensive
20%
Dynamic Programming
40%
Execution Time
20%
Graphics Processing Unit
100%
Individual Sequences
20%
Multicore Processors
20%
NVIDIA
20%
P100
20%
Parallelization
20%
Ribonucleic Acid
100%
Sankoff Algorithm
60%
Structural Alignment
40%
Tesla
20%
Two-level
40%
Unit-based
20%
Wavefront
60%
Computer Science
Execution Time
20%
Graphics Processing Unit
100%
Hierarchical Level
20%
Multicore
20%
Parallelism
20%
Running Version
20%
Speed-up
20%
Engineering
Diagonal Matrix
20%
Pair Probability
100%
Tesla Roadster
20%