Phospho.ELM: a database of phosphorylation sites--update 2011

Holger Dinkel; Claudia Chica; Allegra Via; Cathryn M Gould; Lars J Jensen; Toby J Gibson; Francesca Diella

doi:10.1093/nar/gkq1104

Phospho.ELM: a database of phosphorylation sites--update 2011

Holger Dinkel, Claudia Chica, Allegra Via, Cathryn M Gould, Lars J Jensen, Toby J Gibson, Francesca Diella

398 Citationer (Scopus)

Abstract

The Phospho.ELM resource (http://phospho.elm.eu.org) is a relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature and phosphoproteomic analyses. The resource has been actively developed for more than 7 years and currently comprises 42,574 serine, threonine and tyrosine non-redundant phosphorylation sites. Several new features have been implemented, such as structural disorder/order and accessibility information and a conservation score. Additionally, the conservation of the phosphosites can now be visualized directly on the multiple sequence alignment used for the score calculation. Finally, special emphasis has been put on linking to external resources such as interaction networks and other databases.

Originalsprog	Engelsk
Bogserie	Nucleic Acids Symposium Series
Vol/bind	39
Udgave nummer	Database issue
Sider (fra-til)	D261-7
ISSN	0261-3166
DOI	https://doi.org/10.1093/nar/gkq1104
Status	Udgivet - 1 jan. 2011

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10.1093/nar/gkq1104

Citationsformater

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abstract = "The Phospho.ELM resource (http://phospho.elm.eu.org) is a relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature and phosphoproteomic analyses. The resource has been actively developed for more than 7 years and currently comprises 42,574 serine, threonine and tyrosine non-redundant phosphorylation sites. Several new features have been implemented, such as structural disorder/order and accessibility information and a conservation score. Additionally, the conservation of the phosphosites can now be visualized directly on the multiple sequence alignment used for the score calculation. Finally, special emphasis has been put on linking to external resources such as interaction networks and other databases.",

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AU - Dinkel, Holger

AU - Chica, Claudia

AU - Via, Allegra

AU - Gould, Cathryn M

AU - Jensen, Lars J

AU - Gibson, Toby J

AU - Diella, Francesca

PY - 2011/1/1

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N2 - The Phospho.ELM resource (http://phospho.elm.eu.org) is a relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature and phosphoproteomic analyses. The resource has been actively developed for more than 7 years and currently comprises 42,574 serine, threonine and tyrosine non-redundant phosphorylation sites. Several new features have been implemented, such as structural disorder/order and accessibility information and a conservation score. Additionally, the conservation of the phosphosites can now be visualized directly on the multiple sequence alignment used for the score calculation. Finally, special emphasis has been put on linking to external resources such as interaction networks and other databases.

AB - The Phospho.ELM resource (http://phospho.elm.eu.org) is a relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature and phosphoproteomic analyses. The resource has been actively developed for more than 7 years and currently comprises 42,574 serine, threonine and tyrosine non-redundant phosphorylation sites. Several new features have been implemented, such as structural disorder/order and accessibility information and a conservation score. Additionally, the conservation of the phosphosites can now be visualized directly on the multiple sequence alignment used for the score calculation. Finally, special emphasis has been put on linking to external resources such as interaction networks and other databases.

KW - Amino Acid Sequence

KW - Animals

KW - Conserved Sequence

KW - Databases, Protein

KW - Humans

KW - Mice

KW - Phosphoproteins

KW - Phosphorylation

KW - Protein Conformation

KW - Sequence Analysis, Protein

KW - Serine

KW - Threonine

KW - Tyrosine

U2 - 10.1093/nar/gkq1104

DO - 10.1093/nar/gkq1104

M3 - Journal article

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SN - 0261-3166

VL - 39

SP - D261-7

JO - Nucleic acids symposium series

JF - Nucleic acids symposium series

IS - Database issue

ER -

Phospho.ELM: a database of phosphorylation sites--update 2011

Abstract

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