Crowdsourced emphysema assessment

Silas Nyboe Ørting; Veronika Cheplygina; Jens Petersen; Laura H. Thomsen; Mathilde M. W. Wille; Marleen de Bruijne

doi:10.1007/978-3-319-67534-3_14

Crowdsourced emphysema assessment

Silas Nyboe Ørting^*, Veronika Cheplygina, Jens Petersen, Laura H. Thomsen, Mathilde M. W. Wille, Marleen de Bruijne

^*Corresponding author af dette arbejde

Datalogisk Institut

2 Citationer (Scopus)

Abstract

Classification of emphysema patterns is believed to be useful for improved diagnosis and prognosis of chronic obstructive pulmonary disease. Emphysema patterns can be assessed visually on lung CT scans. Visual assessment is a complex and time-consuming task performed by experts, making it unsuitable for obtaining large amounts of labeled data. We investigate if visual assessment of emphysema can be framed as an image similarity task that does not require expert. Substituting untrained annotators for experts makes it possible to label data sets much faster and at a lower cost. We use crowd annotators to gather similarity triplets and use t-distributed stochastic triplet embedding to learn an embedding. The quality of the embedding is evaluated by predicting expert assessed emphysema patterns. We find that although performance varies due to low quality triplets and randomness in the embedding, we still achieve a median F₁ score of 0.58 for prediction of four patterns.

Originalsprog	Engelsk
Titel	Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis : 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings
Redaktører	M. Jorge Cardoso, Tal Arbel, Su-Lin Lee, Veronika Cheplygina, Simone Balocco, Diana Mateus, Guillaume Zahnd, Lena Maier-Hein, Stefanie Dermirci, Eric Granger, Luc Duong, Marc-André Carbonneau, Shadi Albarquoni, Gustaco Carneiro
Antal sider	10
Forlag	Springer
Publikationsdato	2017
Sider	126-135
ISBN (Trykt)	978-3-319-67533-6
ISBN (Elektronisk)	978-3-319-67534-3
DOI	https://doi.org/10.1007/978-3-319-67534-3_14
Status	Udgivet - 2017
Begivenhed	2nd International Workshop on Large-Scale Annotation of Biomedical Data and Expert Label Synthesis - Québec City, Canada Varighed: 10 sep. 2017 → 14 sep. 2017 Konferencens nummer: 2

Workshop

Workshop	2nd International Workshop on Large-Scale Annotation of Biomedical Data and Expert Label Synthesis
Nummer	2
Land/Område	Canada
By	Québec City
Periode	10/09/2017 → 14/09/2017

Navn	Lecture notes in computer science
Vol/bind	10552
ISSN	0302-9743

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10.1007/978-3-319-67534-3_14

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Citationsformater

Ørting, S. N., Cheplygina, V., Petersen, J., Thomsen, L. H., Wille, M. M. W., & de Bruijne, M. (2017). Crowdsourced emphysema assessment. I M. J. Cardoso, T. Arbel, S-L. Lee, V. Cheplygina, S. Balocco, D. Mateus, G. Zahnd, L. Maier-Hein, S. Dermirci, E. Granger, L. Duong, M-A. Carbonneau, S. Albarquoni, & G. Carneiro (red.), Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings (s. 126-135). Springer. Lecture notes in computer science Bind 10552 https://doi.org/10.1007/978-3-319-67534-3_14

Crowdsourced emphysema assessment. / Ørting, Silas Nyboe; Cheplygina, Veronika; Petersen, Jens et al.

Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. red. / M. Jorge Cardoso; Tal Arbel; Su-Lin Lee; Veronika Cheplygina; Simone Balocco; Diana Mateus; Guillaume Zahnd; Lena Maier-Hein; Stefanie Dermirci; Eric Granger; Luc Duong; Marc-André Carbonneau; Shadi Albarquoni; Gustaco Carneiro. Springer, 2017. s. 126-135 (Lecture notes in computer science, Bind 10552).

Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › peer review

Ørting, SN, Cheplygina, V, Petersen, J, Thomsen, LH, Wille, MMW & de Bruijne, M 2017, Crowdsourced emphysema assessment. i MJ Cardoso, T Arbel, S-L Lee, V Cheplygina, S Balocco, D Mateus, G Zahnd, L Maier-Hein, S Dermirci, E Granger, L Duong, M-A Carbonneau, S Albarquoni & G Carneiro (red), Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Springer, Lecture notes in computer science, bind 10552, s. 126-135, 2nd International Workshop on Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, Québec City, Canada, 10/09/2017. https://doi.org/10.1007/978-3-319-67534-3_14

Ørting SN, Cheplygina V, Petersen J, Thomsen LH, Wille MMW, de Bruijne M. Crowdsourced emphysema assessment. I Cardoso MJ, Arbel T, Lee S-L, Cheplygina V, Balocco S, Mateus D, Zahnd G, Maier-Hein L, Dermirci S, Granger E, Duong L, Carbonneau M-A, Albarquoni S, Carneiro G, red., Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Springer. 2017. s. 126-135. (Lecture notes in computer science, Bind 10552). doi: 10.1007/978-3-319-67534-3_14

Ørting, Silas Nyboe ; Cheplygina, Veronika ; Petersen, Jens et al. / Crowdsourced emphysema assessment. Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. red. / M. Jorge Cardoso ; Tal Arbel ; Su-Lin Lee ; Veronika Cheplygina ; Simone Balocco ; Diana Mateus ; Guillaume Zahnd ; Lena Maier-Hein ; Stefanie Dermirci ; Eric Granger ; Luc Duong ; Marc-André Carbonneau ; Shadi Albarquoni ; Gustaco Carneiro. Springer, 2017. s. 126-135 (Lecture notes in computer science, Bind 10552).

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abstract = "Classification of emphysema patterns is believed to be useful for improved diagnosis and prognosis of chronic obstructive pulmonary disease. Emphysema patterns can be assessed visually on lung CT scans. Visual assessment is a complex and time-consuming task performed by experts, making it unsuitable for obtaining large amounts of labeled data. We investigate if visual assessment of emphysema can be framed as an image similarity task that does not require expert. Substituting untrained annotators for experts makes it possible to label data sets much faster and at a lower cost. We use crowd annotators to gather similarity triplets and use t-distributed stochastic triplet embedding to learn an embedding. The quality of the embedding is evaluated by predicting expert assessed emphysema patterns. We find that although performance varies due to low quality triplets and randomness in the embedding, we still achieve a median F1 score of 0.58 for prediction of four patterns.",

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Crowdsourced emphysema assessment

Abstract

Workshop

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