Stinus Lindgreen

Publikation

Publikationer pr. år 2006 2007 2008 2010 2012 2014 2016 2016

• 15 Tidsskriftartikel
• 1 Ph.d.-afhandling

Publikationer pr. år

Publikationer pr. år

Søgeresultater

• 2016

  AdapterRemoval v2: rapid adapter trimming, identification, and read merging

  Schubert, M., Lindgreen, S. & Orlando, L. A. A., 12 feb. 2016, I: BMC Research Notes. 9, 7 s., 88.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • structure-specific endonuclease I 100%
  • Datasets 72%
  • Amount 38%
  401 Citationer (Scopus)

  145 Downloads (Pure)

• An evaluation of the accuracy and speed of metagenome analysis tools

  Lindgreen, S., Adair, K. L. & Gardner, P. P., 18 jan. 2016, I: Scientific Reports. 6, 14 s., 19233.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Metagenome 100%
  • Benchmarking 75%
  • Datasets 55%
  • Metagenomics 43%
  • Firearms 39%
  157 Citationer (Scopus)

  125 Downloads (Pure)
• 2014

  Adaptable probabilistic mapping of short reads using position specific scoring matrices

  Kerpedjiev, P., Frellsen, J., Lindgreen, S. & Krogh, A., 9 apr. 2014, I: B M C Bioinformatics. 15, 17 s., 15:100.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Position-Specific Scoring Matrices 100%
  • Sequencing Method 93%
  • DNA Sequencing 77%
  • Scoring 74%
  • Error 46%
  31 Citationer (Scopus)

  1550 Downloads (Pure)

• Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

  Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E., & 1 flereOrlando, L. A. A., mar. 2014, I: Genome Research. 24, 3, s. 454-466 13 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Cytosine 100%
  • Nucleosomes 98%
  • Human Genome 88%
  • Methylation 76%
  • Epigenomics 73%
  90 Citationer (Scopus)

  274 Downloads (Pure)

• Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling

  Lindgreen, S., Umu, S. U., Lai, A. S-W., Eldai, H., Liu, W., McGimpsey, S., Wheeler, N. E., Biggs, P. J., Thomson, N. R., Barquist, L., Poole, A. M. & Gardner, P. P., 1 okt. 2014, I: P L o S One. 10, 10, 10 s., e1003907.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • RNA 100%
  • non-coding RNA 95%
  • Untranslated RNA 93%
  • Phylogenetics 76%
  • Transcriptome 76%
  27 Citationer (Scopus)

  704 Downloads (Pure)

• SNPest: a probabilistic graphical model for estimating genotypes

  Lindgreen, S., Krogh, A. & Pedersen, J. S., 2014, I: BMC Research Notes. 7, 12 s., 298.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Statistical Models 100%
  • Ancient DNA 94%
  • Error 66%
  • Diploidy 64%
  • Genotype 63%
  4 Citationer (Scopus)

  296 Downloads (Pure)
• 2012

  AdapterRemoval: easy cleaning of next generation sequencing reads

  Lindgreen, S., 2012, I: BMC Research Notes. 5, 337, 7 s., 337.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • High-Throughput Nucleotide Sequencing 100%
  • Nucleotide 85%
  • Amount 44%
  • Single Nucleotide Polymorphism 43%
  • Nucleotides 42%
  318 Citationer (Scopus)

  1179 Downloads (Pure)

• Improving ancient DNA read mapping against modern reference genomes

  Schubert, M., Ginolhac, A., Lindgreen, S., Thompson, J. F., Al-Rasheid, K. A. S., Willerslev, E., Krogh, A. & Orlando, L. A. A., 10 maj 2012, I: BMC Genomics. 13, 15 s., 178.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Ancient DNA 100%
  • Genome 42%
  • Firearms 20%
  • DNA Damage 15%
  • Forensic Anthropology 11%
  133 Citationer (Scopus)

  3285 Downloads (Pure)
• 2011

  An Aboriginal Australian genome reveals separate human dispersals into Asia

  Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C., & 38 flereMoreno Mayar, J. V., Muller, C., Dortch, J., Gilbert, T., Lund, O., Wesolowska, A., Karmin, M., Weinert, L. A., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., van Driem, G., Jha, A. R., Ricaut, F-X., de Knijff, P., Migliano, A. B., Gallego Romero, I., Kristiansen, K., Lambert, D. M., Brunak, S., Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, C. D., Krogh, A., Foley, R. A., Lahr, M. M., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, R., Wang, J. & Willerslev, E., 7 okt. 2011, I: Science. 334, 6052, s. 94-98 5 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Oceanic Ancestry Group 100%
  • Genome 46%
  • Gene Flow 34%
  • Western Australia 29%
  • North American Indians 27%
  412 Citationer (Scopus)
• 2010

  Ancient human genome sequence of an extinct Palaeo-Eskimo

  Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S., & 32 flereBunce, M., Lorenzen, E., Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, K., Bak, M., Tommerup, N., Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, M., Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, T. V. O., Nielsen, F. C., Crawford, M. H., Brunak, S., Sicheritz-Pontén, T., Villems, R., Nielsen, R., Krogh, A., Wang, J. & Willerslev, E., 11 feb. 2010, I: Nature. 463, 7282, s. 757-762 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Inuits 100%
  • Human Genome 70%
  • Single Nucleotide Polymorphism 56%
  • Genome 45%
  • Permafrost 41%
  485 Citationer (Scopus)

• Bioinformatical approaches to RNA structure prediction & Sequencing of an ancient human genome

  Lindgreen, S., 2010, Biologisk Institut: Museum Tusculanum. 111 s.

  Publikation: Bog/antologi/afhandling/rapport › Ph.d.-afhandling

  • Ancient DNA 100%
  • Human Genome 65%
  • Base Pairing 64%
  • Research Personnel 43%
  • RNA 43%
• 2008

  Rfam: updates to the RNA families database

  Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, I: Nucleic Acids Research.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Nucleic Acid Databases 100%
  • Small Nucleolar RNA 61%
  • Sequence Alignment 51%
  • Transfer RNA 46%
  • MicroRNAs 35%
  625 Citationer (Scopus)

• WAR: webserver for aligning structural RNAs

  Þórarinsson, E. & Lindgreen, S., 2008, I: Nucleic Acids Research. 36, Suppl. 2, s. W79-W84 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Untranslated RNA 100%
  • RNA 61%
  36 Citationer (Scopus)

  665 Downloads (Pure)
• 2007

  MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.

  Lindgreen, S., Gardner, P. P. & Krogh, A., 2007, I: Bioinformatics. 23, 24, s. 3304-11 7 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Structure Prediction 100%
  • RNA 75%
  • Simulated Annealing 75%
  • Alignment 72%
  • Untranslated RNA 70%
  57 Citationer (Scopus)

• Multiple alignment and structure prediction of non-coding RNA sequences

  Lindgreen, S., Gardner, P. P. & Krogh, A., 20 nov. 2007, I: BMC Bioinformatics. 8, SUPPL. 8, P8.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  1 Citationer (Scopus)
• 2006

  Measuring covariation in RNA alignments: Physical realism improves information measures

  Lindgreen, S., Gardner, P. P. & Krogh, A., 2006, I: Bioinformatics. 22, 24, s. 2988-2995 8 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Information Measure 100%
  • RNA 93%
  • Alignment 89%
  • Untranslated RNA 88%
  • Computational Biology 73%
  39 Citationer (Scopus)