Publikationer pr. år
Publikationer pr. år
Personlig profil
Kort præsentation
I am professor of Bioinformatics and the head of the Section for Computational and RNA Biology in the Department of Biology. I have a Ph.D. in theoretical physics, but moved into bioinformatics in 1991 as a postdoc at UCSC. Since then I have worked at the Sanger Centre in Cambridge and at the Technical University of Denmark before joining the University of Copenhagen in 2002. I have worked in many areas of bioinformatics, both with theory and applications. I am probably most well known for early work on hidden Markov models for biological sequences. In recent years I have focussed on analysis of data from high-throughput DNA sequencing with applications in post-transcriptional regulation, ancient genomics, metagenomics, and transcriptome analysis.
Fingeraftryk
Dyk ned i forskningsemnerne, hvor Anders Krogh er aktive. Disse emneetiketter kommer fra dennes persons arbejder. Sammen danner de et unikt fingerprint.
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Samarbejde og topforskningsområder i de sidste fem år
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Publikation
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Accurate genotyping across variant classes and lengths using variant graphs
Sibbesen, J. A., Maretty, L., Krogh, A., Petersen, B., Sibbesen, J. A., Liu, S., Have, C. T., Bork-Jensen, J., Guo, X., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J. & Brunak, S., 1 jul. 2018, I: Nature Genetics. 50, s. 1054-1059 6 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios
Matey-Hernandez, M. L., Danish Pan Genome Consortium, Brunak, S., Izarzugaza, J. M. G., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J., Eiberg, H. R. L. & Kristiansen, K., 2018, I: BMC Bioinformatics. 19, s. 1-12 239.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History
Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T., & 18 flere, 4 okt. 2018, I: Cell. 175, 2, s. 347-359, e1-e7Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion
Danish Pan Genome Consortium, Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Rasmussen, S., Kristiansen, K. & Brunak, S., aug. 2017, I: PLOS Genetics. 13, 8, s. e1006834Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Assembly and analysis of 100 full MHC haplotypes from the Danish population
Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., & 39 flere, sep. 2017, I: Genome Research. 27, 9, s. 1597-1607 11 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors
Plass, M., Rasmussen, S. H. & Krogh, A., 14 apr. 2017, I: PLoS Computational Biology. 13, 4, 26 s., e1005460.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X., & 39 flere, 3 aug. 2017, I: Nature. 548, 7665, s. 87-91 5 s.Publikation: Bidrag til tidsskrift › Letter › peer review
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Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches
Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, A., Bonch-Osmolovskaya, E. A., Peng, X. & Kublanov, I. V., 2 nov. 2017, I: Frontiers in Microbiology. 8, 11 s., 2140.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
Forskningsdatasæt
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Additional file 1 of Context dependency of nucleotide probabilities and variants in human DNA
Liang, Y. (Ophavsmand), Grønbæk, C. (Ophavsmand), Fariselli, P. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2022
DOI: 10.6084/m9.figshare.19101791, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Context_dependency_of_nucleotide_probabilities_and_variants_in_human_DNA/19101791
Datasæt
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Additional file 1 of Context dependency of nucleotide probabilities and variants in human DNA
Liang, Y. (Ophavsmand), Grønbæk, C. (Ophavsmand), Fariselli, P. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2022
DOI: 10.6084/m9.figshare.19101791.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Context_dependency_of_nucleotide_probabilities_and_variants_in_human_DNA/19101791/1
Datasæt
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Context dependency of nucleotide probabilities and variants in human DNA
Liang, Y. (Ophavsmand), Grønbæk, C. (Ophavsmand), Fariselli, P. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2022
DOI: 10.6084/m9.figshare.c.5819663, https://springernature.figshare.com/collections/Context_dependency_of_nucleotide_probabilities_and_variants_in_human_DNA/5819663
Datasæt
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N-of-one differential gene expression without control samples using a deep generative model
Prada-Luengo, I. (Ophavsmand), Schuster, V. (Ophavsmand), Liang, Y. (Ophavsmand), Terkelsen, T. (Ophavsmand), Sora, V. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2024
DOI: 10.6084/m9.figshare.c.6935315.v1, https://springernature.figshare.com/collections/N-of-one_differential_gene_expression_without_control_samples_using_a_deep_generative_model/6935315/1
Datasæt
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Additional file 6 of N-of-one differential gene expression without control samples using a deep generative model
Prada-Luengo, I. (Ophavsmand), Schuster, V. (Ophavsmand), Liang, Y. (Ophavsmand), Terkelsen, T. (Ophavsmand), Sora, V. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2024
DOI: 10.6084/m9.figshare.26641246.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_N-of-one_differential_gene_expression_without_control_samples_using_a_deep_generative_model/26641246/1
Datasæt
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N-of-one differential gene expression without control samples using a deep generative model
Prada-Luengo, I. (Ophavsmand), Schuster, V. (Ophavsmand), Liang, Y. (Ophavsmand), Terkelsen, T. (Ophavsmand), Sora, V. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2024
DOI: 10.6084/m9.figshare.c.6935315, https://springernature.figshare.com/collections/N-of-one_differential_gene_expression_without_control_samples_using_a_deep_generative_model/6935315
Datasæt
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scDGD pretrained models
Schuster, V. (Ophavsmand) & Krogh, A. (Ophavsmand), Zenodo, 2023
DOI: 10.1093/bioinformatics/btad497, https://zenodo.org/records/10696952
Datasæt
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Context dependency of nucleotide probabilities and variants in human DNA
Liang, Y. (Ophavsmand), Grønbæk, C. (Ophavsmand), Fariselli, P. (Ophavsmand) & Krogh, A. (Ophavsmand), figshare, 2022
DOI: 10.6084/m9.figshare.c.5819663.v1, https://springernature.figshare.com/collections/Context_dependency_of_nucleotide_probabilities_and_variants_in_human_DNA/5819663/1
Datasæt