Shyam Gopalakrishnan

Publikation

Publikationer pr. år 2016 2018 2019 2019

• 15 Tidsskriftartikel
• 1 Letter
• 1 Review

Publikationer pr. år

Publikationer pr. år

Søgeresultater

• 2019

  Hybridization between two high Arctic cetaceans confirmed by genomic analysis

  Skovrind, M., Castruita, J. A. S., Haile, J., Treadaway, E. C., Gopalakrishnan, S., Westbury, M. V., Heide-Jorgensen, M. P., Szpak, P. & Lorenzen, E. D., 1 dec. 2019, I: Scientific Reports. 9, 10 s., 7729.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Whales 100%
  • Natural History 21%
  • Skull 20%
  • Nitrogen Isotopes 19%
  • Carbon Isotopes 18%
  9 Citationer (Scopus)

  54 Downloads (Pure)

• Promises and pitfalls of using high-throughput sequencing for diet analysis

  Alberdi, A., Aizpurua, O., Bohmann, K., Gopalakrishnan, S., Lynggaard, C., Nielsen, M. & Gilbert, M. T. P., mar. 2019, I: Molecular Ecology Resources. 19, 2, s. 327-348

  Publikation: Bidrag til tidsskrift › Review › peer review

  • Prey Cleavage 100%
  • diet 58%
  • sequence analysis 49%
  • Diet 45%
  • DNA 41%
  43 Citationer (Scopus)

• Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

  Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J., & 39 flereHallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, M., Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, A. J., P Gilbert, M. T., Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 4 dec. 2019, I: Proceedings. Biological sciences. 286, 1916, s. 20191929

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  • sled dogs 100%
  • Arctic region 59%
  • dog 57%
  • dogs 43%
  • Dogs 40%
  12 Citationer (Scopus)

  2 Downloads (Pure)

• Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave

  Schroeder, H., Margaryan, A., Szmyt, M., Theulot, B., Włodarczak, P., Rasmussen, S., Gopalakrishnan, S., Szczepanek, A., Konopka, T., Jensen, T. Z. T., Witkowska, B., Wilk, S., Przybyła, M. M., Pospieszny, Ł., Sjögren, K-G., Belka, Z., Olsen, J., Kristiansen, K., Willerslev, E., Frei, K. M., & 3 flereSikora, M., Johannsen, N. N. & Allentoft, M. E., 28 maj 2019, I: Proceedings of the National Academy of Sciences of the United States of America. 116, 22, s. 10705-10710

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  • Grassland 100%
  • Violence 72%
  • Fixed Partial Denture 31%
  • Eastern Europe 30%
  • Population Genetics 28%
  32 Citationer (Scopus)
• 2018

  Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding

  Aizpurua, O., Budinski, I., Georgiakakis, P., Gopalakrishnan, S., Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, T. & Alberdi, A., 1 feb. 2018, I: Molecular Ecology. 27, 3, s. 815-825 11 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • arthropod pests 100%
  • Chiroptera 93%
  • Arthropods 92%
  • bat 83%
  • Agriculture 82%
  46 Citationer (Scopus)

• Ancient genomes from Iceland reveal the making of a human population

  Ebenesersdóttir, S. S., Sandoval Velasco, M., Gunnarsdóttir, E. D., Jagadeesan, A., Guðmundsdóttir, V. B., Thordardóttir, E. L., Einarsdóttir, M. S., Moore, K. H. S., Sigurðsson, Á., Magnusdóttir, D. N., Jonsson, H., Snorradóttir, S., Hovig, E., Møller, P., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T., Cavalleri, G. L., & 10 flereGilbert, E., Lalueza-Fox, C., Walser, J. . III., Kristjánsdóttir, S., Gopalakrishnan, S., Árnadóttir, L., Magnússon, Ó. Þ., Gilbert, T., Stefánsson, K. & Helgason, A., 1 jun. 2018, I: Science. 360, 6392, s. 1028-1032 5 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Iceland 100%
  • Genome 49%
  • Gene Pool 36%
  • Genetic Drift 35%
  • Scandinavian and Nordic Countries 32%
  22 Citationer (Scopus)

• Interspecific Gene Flow Shaped the Evolution of the Genus Canis

  Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K., & 7 flereHeide-Jørgensen, M. P., Petersen, B., Sicheritz-Ponten, T., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., 5 nov. 2018, I: Current Biology. 28, 21, s. 3441-3449

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  • Canis anthus 100%
  • Gene Flow 84%
  • Canis 78%
  • Canis lupus 74%
  • Cuon alpinus 66%
  33 Citationer (Scopus)

  69 Downloads (Pure)

• Origins and genetic legacies of the Caribbean Taino

  Schroeder, H., Sikora, M., Gopalakrishnan, S., Cassidy, L. M., Delserc, P. M., Velasco, M. S., Schraiber, J. G., Rasmussen, S., Homburger, J. R., Avila-Arcos, M. C., Allentoft, M. E., Moreno Mayar, J. V., Renaud, G., Gomez-Carballa, A., Laffoon, J. E., Hopkins, R. J. A., Higham, T. F. G., Carr, R. S., Schaffer, W. C., Day, J. S., & 7 flereHoogland, M., Salas, A., Bustamante, C. D., Nielsen, R., Bradley, D. G., Hofman, C. L. & Willerslev, E., 6 mar. 2018, I: Proceedings of the National Academy of Sciences of the United States of America. 115, 10, s. 2341-2346 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Genome 100%
  • Bahamas 66%
  • Ancient DNA 58%
  • Caves 53%
  • Inbreeding 52%
  27 Citationer (Scopus)

  7 Downloads (Pure)

• Single-tube library preparation for degraded DNA

  Carøe, C., Gopalakrishnan, S., Vinner, L., Mak, S. S. T., Sinding, M. H. S., Samaniego, J. A., Wales, N., Sicheritz-Ponten, T. & Gilbert, M. T. P., 1 feb. 2018, I: Methods in Ecology and Evolution. 9, 2, s. 410-419 10 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • library 100%
  • DNA 88%
  • Canis lupus 39%
  • protocol 22%
  • protocols 22%
  85 Citationer (Scopus)

• The evolutionary history of dogs in the Americas

  Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V., & 30 flereGuiry, E., Hansen, A. J., Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y-M., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J-M., Pavlova, E. Y., Sciulli, P., Sinding, M-H. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, E., Pitulko, V. V., Barnes, I., Gilbert, M. T. P., Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., 6 jul. 2018, I: Science. 361, 6397, s. 81-85 6 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • History 100%
  • Dogs 96%
  • Veterinary Venereal Tumors 25%
  • Siberia 23%
  • North American Indians 18%
  46 Citationer (Scopus)

• Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

  Bohmann, K., Gopalakrishnan, S., Nielsen, M., Nielsen, L. D. S. B., Jones, G., Streicker, D. G. & Gilbert, T., sep. 2018, I: Molecular Ecology Resources. 18, 5, s. 1050-1063 14 s.

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  • Ecology 100%
  • Chiroptera 97%
  • bat 87%
  • DNA barcoding 81%
  • population structure 80%
  28 Citationer (Scopus)

  168 Downloads (Pure)

• Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites

  Liu, Y., Wang, L., Xu, T., Guo, X., Li, Y., Yin, T., Yang, H., Hu, Y., Adeola, A. C., Sanke, O. J., Otecko, N. O., Wang, M., Ma, Y., Charles, O. S., Sinding, M. S., Gopalakrishnan, S., Alfredo Samaniego, J., Hansen, A. J., Fernandes, C., Gaubert, P., & 10 flereBudd, J., Dawuda, P. M., Knispel Rueness, E., Jiang, L., Zhai, W., Gilbert, M. T. P., Peng, M., Qi, X., Wang, G. & Zhang, Y., 1 feb. 2018, I: MOLECULAR BIOLOGY AND EVOLUTION . 35, 2, s. 287-298

  Publikation: Bidrag til tidsskrift › Letter › peer review

  • Whole Genome Sequencing 100%
  • dog 86%
  • parasite 86%
  • genome 80%
  • Parasites 71%
  15 Citationer (Scopus)
• 2017

  Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

  Mak, S., Gopalakrishnan, S., Carøe, C., Geng, C., Liu, S., Sinding, M. H. S., Kuderna, L. F. K., Zhang, W., Fu, S., Garrett Vieira, F. J., Germonpré, M., Bocherens, H., Fedorov, S., Petersen, B., Sicheritz-Pontén, T., Marques-Bonet, T., Zhang, G., Jiang, H. & Gilbert, T., 1 aug. 2017, I: GigaScience. 6, 8, s. 1–13 13 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • DNA 100%
  • High-Throughput Nucleotide Sequencing 93%
  • Ancient DNA 62%
  • Libraries 34%
  • DNA Damage 33%
  61 Citationer (Scopus)

  281 Downloads (Pure)

• The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

  Gopalakrishnan, S., Samaniego Castruita, J. A., Sinding, M. H. S., Kuderna, L. F. K., Räikkönen, J., Petersen, B., Sicheritz-Pontén, T., Larson, G., Orlando, L. A. A., Marques-Bonet, T., Hansen, A. J., Dalén, L. & Gilbert, T., 2017, I: BMC Genomics. 18, 11 s., 495.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Metagenomics 100%
  • Dogs 58%
  • Genome 54%
  • Domestication 14%
  • Principal Component Analysis 9%
  27 Citationer (Scopus)

  135 Downloads (Pure)
• 2016

  An Anthropocene map of genetic diversity

  Miraldo, A., Li, S., Borregaard, M. K., Florez Rodriguez, A., Gopalakrishnan, S., Rizvanovic, M., Wang, Z., Rahbek, C., Marske, K. A. & Nogues, D. B., 30 sep. 2016, I: Science. 353, 6307, s. 1532-1535 4 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Genetic Variation 100%
  • Biodiversity 94%
  • Ecosystem 76%
  • Mammals 61%
  • Genetic Loci 42%
  107 Citationer (Scopus)

• Genome sequence of a 5,310-year-old maize cob provides insights into the early stages of maize domestication

  Ramos Madrigal, J., Smith, B. D., Moreno Mayar, J. V., Gopalakrishnan, S., Ross-Ibarra, J., Gilbert, T. & Wales, N., 5 dec. 2016, I: Current Biology. 26, 23, s. 3195-3201 7 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Domestication 100%
  • Zea mays 78%
  • corn cobs 77%
  • domestication 65%
  • Genome 43%
  57 Citationer (Scopus)

• Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice

  Parker, C. C., Gopalakrishnan, S., Carbonetto, P., Gonzales, N. M., Leung, E., Park, Y. J., Aryee, E., Davis, J., Blizard, D. A., Ackert-Bicknell, C. L., Lionikas, A., Pritchard, J. K. & Palmer, A. A., 1 aug. 2016, I: Nature Genetics. 48, 8, s. 919-926 8 s.

  Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

  • Farms 100%
  • Genome-Wide Association Study 91%
  • Gene Expression 52%
  • Quantitative Trait Loci 31%
  • Linkage Disequilibrium 28%
  46 Citationer (Scopus)