Synthesis, experimental and computational studies of N-(4-amino-6-oxo-1,6-dihydropyrimidin-5-yl)benzamide

Agnieszka A. Kaczor*, Agata Bartyzel, Monika Pitucha, Tomasz M. Wróbel, Sylwia Woźniak, Dariusz Matosiuk

*Corresponding author for this work
1 Citation (Scopus)

Abstract

Background: Blockade of kainate receptors is an emerging strategy to treat neurodegenera-tive diseases, including Parkinson’s disease as well as to treat epilepsy. In particular, non-competitive antagonists of kainate receptors are promising due to the expected good safety profile. We present here synthesis, experimental and computational studies of N-(4-amino-6-oxo-1,6-dihydropyrimidin-5-yl)benzamide which is an intermediate in the synthesis of hypoxanthine derivatives which were designed as non-competitive antagonists of kainate GluK1/GluK2 receptors. Method: The title compound was obtained in a five-step synthesis protocol and characterized used X-ray crystallography and experimental and computed spectra. Results: The presented detailed X-ray studies of the title compound confirm the reaction course. The title compound crystallizes in triclinic P-1 space group. The asymmetric unit comprises two independent molecules of the compound (A and B) and a DMF solvent molecule. The interpretation of IR spectra was facilitated by Potential Energy Distribution (PED) analysis. The low value of HOMO-LUMO gap indicates that the studied compound is relatively reactive. Conclusion: The title compound is a well-characterized intermediate which will be subjected to cycli-zation to hypoxanthine derivative designed as non-competitive antagonist of kainate GluK1 and GluK2 receptors.

Original languageEnglish
JournalLetters in Organic Chemistry
Volume15
Issue number6
Pages (from-to)491-502
ISSN1570-1786
DOIs
Publication statusPublished - 2018

Keywords

  • IR spectra
  • NMR spectra
  • PED analysis
  • Receptors
  • Theoretical computations
  • X-ray studies

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