PigGIS: Pig Genomic Informatics System

Jue Ruan; Yiran Guo; Heng Li; Yafeng Hu; Fei Song; Xin Huang; Karsten Kristiansen; Lars Bolund; Jun Wang

doi:10.1093/nar/gkl808

PigGIS: Pig Genomic Informatics System

Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiansen, Lars Bolund, Jun Wang

6 Citations (Scopus)

Abstract

Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at http://www.piggis.org/ and http://pig.genomics.org.cn/.

Original language	English
Book series	Nucleic Acids Symposium Series
Volume	35
Issue number	Database issue
Pages (from-to)	D654-657
ISSN	0261-3166
DOIs	https://doi.org/10.1093/nar/gkl808
Publication status	Published - 2007
Externally published	Yes

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title = "PigGIS: Pig Genomic Informatics System",

abstract = "Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at http://www.piggis.org/ and http://pig.genomics.org.cn/.",

author = "Jue Ruan and Yiran Guo and Heng Li and Yafeng Hu and Fei Song and Xin Huang and Karsten Kristiansen and Lars Bolund and Jun Wang",

year = "2007",

doi = "10.1093/nar/gkl808",

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pages = "D654--657",

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TY - JOUR

T1 - PigGIS: Pig Genomic Informatics System

AU - Ruan, Jue

AU - Guo, Yiran

AU - Li, Heng

AU - Hu, Yafeng

AU - Song, Fei

AU - Huang, Xin

AU - Kristiansen, Karsten

AU - Bolund, Lars

AU - Wang, Jun

PY - 2007

Y1 - 2007

N2 - Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at http://www.piggis.org/ and http://pig.genomics.org.cn/.

AB - Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at http://www.piggis.org/ and http://pig.genomics.org.cn/.

U2 - 10.1093/nar/gkl808

DO - 10.1093/nar/gkl808

M3 - Journal article

C2 - 17090590

SN - 0261-3166

VL - 35

SP - D654-657

JO - Nucleic acids symposium series

JF - Nucleic acids symposium series

IS - Database issue

ER -

PigGIS: Pig Genomic Informatics System

Abstract

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