TY - JOUR
T1 - PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
AU - Gnad, Florian
AU - Ren, Shubin
AU - Cox, Juergen
AU - Olsen, Jesper Velgaard
AU - Macek, Boris
AU - Oroshi, Mario
AU - Mann, Matthias
N1 - Keywords: Databases, Protein; Evolution; Phosphoproteins; Phosphorylation; Proteome; Software
PY - 2007
Y1 - 2007
N2 - PHOSIDA http://www.phosida.com, a phosphorylation site database, integrates thousands of high-confidence in vivo phosphosites identified by mass spectrometry-based proteomics in various species. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus. Using support vector machines, PHOSIDA also predicts phosphosites.
AB - PHOSIDA http://www.phosida.com, a phosphorylation site database, integrates thousands of high-confidence in vivo phosphosites identified by mass spectrometry-based proteomics in various species. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus. Using support vector machines, PHOSIDA also predicts phosphosites.
U2 - 10.1186/gb-2007-8-11-r250
DO - 10.1186/gb-2007-8-11-r250
M3 - Journal article
C2 - 18039369
SN - 1474-7596
VL - 8
SP - R250
JO - Genome Biology (Online Edition)
JF - Genome Biology (Online Edition)
IS - 11
ER -