Leveraging gene-environment interactions and endotypes for asthma gene discovery

Klaus Bønnelykke, Carole Ober*

*Corresponding author for this work
53 Citations (Scopus)

Abstract

Asthma is a heterogeneous clinical syndrome that includes subtypes of disease with different underlying causes and disease mechanisms. Asthma is caused by a complex interaction between genes and environmental exposures; early-life exposures in particular play an important role. Asthma is also heritable, and a number of susceptibility variants have been discovered in genome-wide association studies, although the known risk alleles explain only a small proportion of the heritability. In this review, we present evidence supporting the hypothesis that focusing on more specific asthma phenotypes, such as childhood asthma with severe exacerbations, and on relevant exposures that are involved in gene-environment interactions (GEIs), such as rhinovirus infections, will improve detection of asthma genes and our understanding of the underlying mechanisms. We will discuss the challenges of considering GEIs and the advantages of studying responses to asthma-associated exposures in clinical birth cohorts, as well as in cell models of GEIs, to dissect the context-specific nature of genotypic risks, to prioritize variants in genome-wide association studies, and to identify pathways involved in pathogenesis in subgroups of patients. We propose that such approaches, in spite of their many challenges, present great opportunities for better understanding of asthma pathogenesis and heterogeneity and, ultimately, for improving prevention and treatment of disease.

Original languageEnglish
JournalJournal of Allergy and Clinical Immunology
Volume137
Issue number3
Pages (from-to)667-679
Number of pages13
ISSN0091-6749
DOIs
Publication statusPublished - 2016

Keywords

  • 17q asthma locus
  • Asthma
  • CDHR3
  • gene-environment interactions
  • genome-wide association study
  • rhinovirus

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