Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

Alexander Sczyrba; Peter Hofmann; Peter Belmann; David Koslicki; Stefan Janssen; Johannes Dröge; Ivan Gregor; Stephan Majda; Jessika Fiedler; Eik Dahms; Andreas Bremges; Adrian Fritz; Ruben Garrido-Oter; Tue Sparholt Jørgensen; Nicole Shapiro; Philip D. Blood; Alexey Gurevich; Yang Bai; Dmitrij Turaev; Matthew Z. DeMaere; Rayan Chikhi; Niranjan Nagarajan; Christopher Quince; Fernando Meyer; Monika Balvociute; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Burton K. H. Chia; Bertrand Denis; Jeff L. Froula; Zhong Wang; Robert Egan; Dongwan Don Kang; Jeffrey J. Cook; Charles Deltel; Michael Beckstette; Claire Lemaitre; Pierre Peterlongo; Guillaume Rizk; Dominique Lavenier; Yu-Wei Wu; Steven W. Singer; Chirag Jain; Marc Strous; Heiner Klingenberg; Peter Meinicke; Michael D. Barton; Thomas Lingner; Hsin-Hung Lin; Yu-Chieh Liao; Genivaldo Gueiros Z. Silva; Daniel A. Cuevas; Robert A. Edwards; Surya Saha; Vitor C. Piro; Bernhard Y. Renard; Mihai Pop; Hans-Peter Klenk; Markus Göker; Nikos C. Kyrpides; Tanja Woyke; Julia A. Vorholt; Paul Schulze-Lefert; Edward M. Rubin; Aaron E. Darling; Thomas Rattei; Alice C. McHardy

doi:10.1038/NMETH.4458

Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Ruben Garrido-Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D. Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z. DeMaereRayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika Balvociute, Lars Hestbjerg Hansen, Søren Johannes Sørensen, Burton K. H. Chia, Bertrand Denis, Jeff L. Froula, Zhong Wang, Robert Egan, Dongwan Don Kang, Jeffrey J. Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu-Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael D. Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans-Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze-Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy

Microbiology

236 Citations (Scopus)

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Original language	English
Journal	Nature Methods
Volume	14
Issue number	11
Pages (from-to)	1063-1071
Number of pages	9
ISSN	1548-7091
DOIs	https://doi.org/10.1038/NMETH.4458
Publication status	Published - 31 Oct 2017

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Critical Assessment of Metagenome InterpretationFinal published version, 5.64 MBLicence: CC BY

https://www.biorxiv.org/content/early/2017/06/12/099127

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Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., ... McHardy, A. C. (2017). Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software. Nature Methods, 14(11), 1063-1071. https://doi.org/10.1038/NMETH.4458

Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Dröge, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jørgensen, TS, Shapiro, N, Blood, PD, Gurevich, A, Bai, Y, Turaev, D, DeMaere, MZ, Chikhi, R, Nagarajan, N, Quince, C, Meyer, F, Balvociute, M, Hansen, LH, Sørensen, SJ, Chia, BKH, Denis, B, Froula, JL, Wang, Z, Egan, R, Kang, DD, Cook, JJ, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, SW, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, MD, Lingner, T, Lin, H-H, Liao, Y-C, Silva, GGZ, Cuevas, DA, Edwards, RA, Saha, S, Piro, VC, Renard, BY, Pop, M, Klenk, H-P, Göker, M, Kyrpides, NC, Woyke, T, Vorholt, JA, Schulze-Lefert, P, Rubin, EM, Darling, AE, Rattei, T & McHardy, AC 2017, 'Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software', Nature Methods, vol. 14, no. 11, pp. 1063-1071. https://doi.org/10.1038/NMETH.4458

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AU - Koslicki, David

AU - Janssen, Stefan

AU - Dröge, Johannes

AU - Gregor, Ivan

AU - Majda, Stephan

AU - Fiedler, Jessika

AU - Dahms, Eik

AU - Bremges, Andreas

AU - Fritz, Adrian

AU - Garrido-Oter, Ruben

AU - Jørgensen, Tue Sparholt

AU - Shapiro, Nicole

AU - Blood, Philip D.

AU - Gurevich, Alexey

AU - Bai, Yang

AU - Turaev, Dmitrij

AU - DeMaere, Matthew Z.

AU - Chikhi, Rayan

AU - Nagarajan, Niranjan

AU - Quince, Christopher

AU - Meyer, Fernando

AU - Balvociute, Monika

AU - Hansen, Lars Hestbjerg

AU - Sørensen, Søren Johannes

AU - Chia, Burton K. H.

AU - Denis, Bertrand

AU - Froula, Jeff L.

AU - Wang, Zhong

AU - Egan, Robert

AU - Kang, Dongwan Don

AU - Cook, Jeffrey J.

AU - Deltel, Charles

AU - Beckstette, Michael

AU - Lemaitre, Claire

AU - Peterlongo, Pierre

AU - Rizk, Guillaume

AU - Lavenier, Dominique

AU - Wu, Yu-Wei

AU - Singer, Steven W.

AU - Jain, Chirag

AU - Strous, Marc

AU - Klingenberg, Heiner

AU - Meinicke, Peter

AU - Barton, Michael D.

AU - Lingner, Thomas

AU - Lin, Hsin-Hung

AU - Liao, Yu-Chieh

AU - Silva, Genivaldo Gueiros Z.

AU - Cuevas, Daniel A.

AU - Edwards, Robert A.

AU - Saha, Surya

AU - Piro, Vitor C.

AU - Renard, Bernhard Y.

AU - Pop, Mihai

AU - Klenk, Hans-Peter

AU - Göker, Markus

AU - Kyrpides, Nikos C.

AU - Woyke, Tanja

AU - Vorholt, Julia A.

AU - Schulze-Lefert, Paul

AU - Rubin, Edward M.

AU - Darling, Aaron E.

AU - Rattei, Thomas

AU - McHardy, Alice C.

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JO - Nature Methods

JF - Nature Methods

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Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

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