BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

Yozen Hernandez; Rocky Bernstein; Pedro Pagan; Levy Vargas; William McCaig; Girish Ramrattan; Saymon Akther; Amanda Larracuente; Lia Di; Filipe Jorge Garrett Vieira; Wei-Gang Qiu

doi:10.1186/s12859-018-2074-9

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

Yozen Hernandez, Rocky Bernstein, Pedro Pagan, Levy Vargas, William McCaig, Girish Ramrattan, Saymon Akther, Amanda Larracuente, Lia Di, Filipe Jorge Garrett Vieira, Wei-Gang Qiu

5 Citations (Scopus)

55 Downloads (Pure)

Original language	English
Article number	76
Journal	B M C Bioinformatics
Volume	19
Number of pages	7
ISSN	1471-2105
DOIs	https://doi.org/10.1186/s12859-018-2074-9
Publication status	Published - 2 Mar 2018

Keywords

FASTA sequences
NEWICK tree
Sequence alignments
UNIX utilities
BioPerl

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10.1186/s12859-018-2074-9Licence: CC BY

BpWrapper BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelinesFinal published version, 677 KBLicence: CC BY

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@article{945bfa023b064aa58cb76a58de194ceb,

title = "BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines",

keywords = "FASTA sequences, NEWICK tree, Sequence alignments, UNIX utilities, BioPerl",

author = "Yozen Hernandez and Rocky Bernstein and Pedro Pagan and Levy Vargas and William McCaig and Girish Ramrattan and Saymon Akther and Amanda Larracuente and Lia Di and Vieira, {Filipe Jorge Garrett} and Wei-Gang Qiu",

year = "2018",

month = mar,

day = "2",

doi = "10.1186/s12859-018-2074-9",

language = "English",

volume = "19",

journal = "B M C Bioinformatics",

issn = "1471-2105",

publisher = "BioMed Central Ltd.",

}

TY - JOUR

T1 - BpWrapper

T2 - BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

AU - Hernandez, Yozen

AU - Bernstein, Rocky

AU - Pagan, Pedro

AU - Vargas, Levy

AU - McCaig, William

AU - Ramrattan, Girish

AU - Akther, Saymon

AU - Larracuente, Amanda

AU - Di, Lia

AU - Vieira, Filipe Jorge Garrett

AU - Qiu, Wei-Gang

PY - 2018/3/2

Y1 - 2018/3/2

KW - FASTA sequences

KW - NEWICK tree

KW - Sequence alignments

KW - UNIX utilities

KW - BioPerl

U2 - 10.1186/s12859-018-2074-9

DO - 10.1186/s12859-018-2074-9

M3 - Journal article

C2 - 29499649

SN - 1471-2105

VL - 19

JO - B M C Bioinformatics

JF - B M C Bioinformatics

M1 - 76

ER -

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

Keywords

Access to Document

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Cite this