Automatic sleep classification using a data-driven topic model reveals latent sleep states

Henriette Koch; Julie A E Christensen; Rune Frandsen; Marielle Zoetmulder; Lars Arvastson; Soren R Christensen; Poul Jennum; Helge B D Sorensen

doi:10.1016/j.jneumeth.2014.07.002

Automatic sleep classification using a data-driven topic model reveals latent sleep states

Henriette Koch, Julie A E Christensen, Rune Frandsen, Marielle Zoetmulder, Lars Arvastson, Soren R Christensen, Poul Jennum, Helge B D Sorensen

30 Citations (Scopus)

Abstract

BACKGROUND: The golden standard for sleep classification uses manual scoring of polysomnography despite points of criticism such as oversimplification, low inter-rater reliability and the standard being designed on young and healthy subjects.

NEW METHOD: To meet the criticism and reveal the latent sleep states, this study developed a general and automatic sleep classifier using a data-driven approach. Spectral EEG and EOG measures and eye correlation in 1s windows were calculated and each sleep epoch was expressed as a mixture of probabilities of latent sleep states by using the topic model Latent Dirichlet Allocation. Model application was tested on control subjects and patients with periodic leg movements (PLM) representing a non-neurodegenerative group, and patients with idiopathic REM sleep behavior disorder (iRBD) and Parkinson's Disease (PD) representing a neurodegenerative group. The model was optimized using 50 subjects and validated on 76 subjects.

RESULTS: The optimized sleep model used six topics, and the topic probabilities changed smoothly during transitions. According to the manual scorings, the model scored an overall subject-specific accuracy of 68.3 ± 7.44 (% μ ± σ) and group specific accuracies of 69.0 ± 4.62 (control), 70.1 ± 5.10 (PLM), 67.2 ± 8.30 (iRBD) and 67.7 ± 9.07 (PD).

COMPARISON WITH EXISTING METHOD: Statistics of the latent sleep state content showed accordances to the sleep stages defined in the golden standard. However, this study indicates that sleep contains six diverse latent sleep states and that state transitions are continuous processes.

CONCLUSIONS: The model is generally applicable and may contribute to the research in neurodegenerative diseases and sleep disorders.

Original language	English
Journal	Journal of Neuroscience Methods
Volume	235
Pages (from-to)	130-137
ISSN	0165-0270
DOIs	https://doi.org/10.1016/j.jneumeth.2014.07.002
Publication status	Published - 30 Sept 2014

Keywords

Aged
Brain
Electroencephalography
Electrooculography
Eye
Female
Humans
Male
Middle Aged
Nocturnal Myoclonus Syndrome
Ocular Physiological Phenomena
Parkinson Disease
Pattern Recognition, Automated
Polysomnography
Probability
REM Sleep Behavior Disorder
Sensitivity and Specificity
Signal Processing, Computer-Assisted
Sleep

Access to Document

10.1016/j.jneumeth.2014.07.002

Cite this

@article{d05adacd152d4c90bdfd8d0feb4f6ee8,

title = "Automatic sleep classification using a data-driven topic model reveals latent sleep states",

abstract = "BACKGROUND: The golden standard for sleep classification uses manual scoring of polysomnography despite points of criticism such as oversimplification, low inter-rater reliability and the standard being designed on young and healthy subjects.NEW METHOD: To meet the criticism and reveal the latent sleep states, this study developed a general and automatic sleep classifier using a data-driven approach. Spectral EEG and EOG measures and eye correlation in 1s windows were calculated and each sleep epoch was expressed as a mixture of probabilities of latent sleep states by using the topic model Latent Dirichlet Allocation. Model application was tested on control subjects and patients with periodic leg movements (PLM) representing a non-neurodegenerative group, and patients with idiopathic REM sleep behavior disorder (iRBD) and Parkinson's Disease (PD) representing a neurodegenerative group. The model was optimized using 50 subjects and validated on 76 subjects.RESULTS: The optimized sleep model used six topics, and the topic probabilities changed smoothly during transitions. According to the manual scorings, the model scored an overall subject-specific accuracy of 68.3 ± 7.44 (% μ ± σ) and group specific accuracies of 69.0 ± 4.62 (control), 70.1 ± 5.10 (PLM), 67.2 ± 8.30 (iRBD) and 67.7 ± 9.07 (PD).COMPARISON WITH EXISTING METHOD: Statistics of the latent sleep state content showed accordances to the sleep stages defined in the golden standard. However, this study indicates that sleep contains six diverse latent sleep states and that state transitions are continuous processes.CONCLUSIONS: The model is generally applicable and may contribute to the research in neurodegenerative diseases and sleep disorders.",

keywords = "Aged, Brain, Electroencephalography, Electrooculography, Eye, Female, Humans, Male, Middle Aged, Nocturnal Myoclonus Syndrome, Ocular Physiological Phenomena, Parkinson Disease, Pattern Recognition, Automated, Polysomnography, Probability, REM Sleep Behavior Disorder, Sensitivity and Specificity, Signal Processing, Computer-Assisted, Sleep",

author = "Henriette Koch and Christensen, {Julie A E} and Rune Frandsen and Marielle Zoetmulder and Lars Arvastson and Christensen, {Soren R} and Poul Jennum and Sorensen, {Helge B D}",

year = "2014",

month = sep,

day = "30",

doi = "10.1016/j.jneumeth.2014.07.002",

language = "English",

volume = "235",

pages = "130--137",

journal = "Journal of Neuroscience Methods",

issn = "0165-0270",

publisher = "Elsevier",

}

TY - JOUR

T1 - Automatic sleep classification using a data-driven topic model reveals latent sleep states

AU - Koch, Henriette

AU - Christensen, Julie A E

AU - Frandsen, Rune

AU - Zoetmulder, Marielle

AU - Arvastson, Lars

AU - Christensen, Soren R

AU - Jennum, Poul

AU - Sorensen, Helge B D

PY - 2014/9/30

Y1 - 2014/9/30

N2 - BACKGROUND: The golden standard for sleep classification uses manual scoring of polysomnography despite points of criticism such as oversimplification, low inter-rater reliability and the standard being designed on young and healthy subjects.NEW METHOD: To meet the criticism and reveal the latent sleep states, this study developed a general and automatic sleep classifier using a data-driven approach. Spectral EEG and EOG measures and eye correlation in 1s windows were calculated and each sleep epoch was expressed as a mixture of probabilities of latent sleep states by using the topic model Latent Dirichlet Allocation. Model application was tested on control subjects and patients with periodic leg movements (PLM) representing a non-neurodegenerative group, and patients with idiopathic REM sleep behavior disorder (iRBD) and Parkinson's Disease (PD) representing a neurodegenerative group. The model was optimized using 50 subjects and validated on 76 subjects.RESULTS: The optimized sleep model used six topics, and the topic probabilities changed smoothly during transitions. According to the manual scorings, the model scored an overall subject-specific accuracy of 68.3 ± 7.44 (% μ ± σ) and group specific accuracies of 69.0 ± 4.62 (control), 70.1 ± 5.10 (PLM), 67.2 ± 8.30 (iRBD) and 67.7 ± 9.07 (PD).COMPARISON WITH EXISTING METHOD: Statistics of the latent sleep state content showed accordances to the sleep stages defined in the golden standard. However, this study indicates that sleep contains six diverse latent sleep states and that state transitions are continuous processes.CONCLUSIONS: The model is generally applicable and may contribute to the research in neurodegenerative diseases and sleep disorders.

AB - BACKGROUND: The golden standard for sleep classification uses manual scoring of polysomnography despite points of criticism such as oversimplification, low inter-rater reliability and the standard being designed on young and healthy subjects.NEW METHOD: To meet the criticism and reveal the latent sleep states, this study developed a general and automatic sleep classifier using a data-driven approach. Spectral EEG and EOG measures and eye correlation in 1s windows were calculated and each sleep epoch was expressed as a mixture of probabilities of latent sleep states by using the topic model Latent Dirichlet Allocation. Model application was tested on control subjects and patients with periodic leg movements (PLM) representing a non-neurodegenerative group, and patients with idiopathic REM sleep behavior disorder (iRBD) and Parkinson's Disease (PD) representing a neurodegenerative group. The model was optimized using 50 subjects and validated on 76 subjects.RESULTS: The optimized sleep model used six topics, and the topic probabilities changed smoothly during transitions. According to the manual scorings, the model scored an overall subject-specific accuracy of 68.3 ± 7.44 (% μ ± σ) and group specific accuracies of 69.0 ± 4.62 (control), 70.1 ± 5.10 (PLM), 67.2 ± 8.30 (iRBD) and 67.7 ± 9.07 (PD).COMPARISON WITH EXISTING METHOD: Statistics of the latent sleep state content showed accordances to the sleep stages defined in the golden standard. However, this study indicates that sleep contains six diverse latent sleep states and that state transitions are continuous processes.CONCLUSIONS: The model is generally applicable and may contribute to the research in neurodegenerative diseases and sleep disorders.

KW - Aged

KW - Brain

KW - Electroencephalography

KW - Electrooculography

KW - Eye

KW - Female

KW - Humans

KW - Male

KW - Middle Aged

KW - Nocturnal Myoclonus Syndrome

KW - Ocular Physiological Phenomena

KW - Parkinson Disease

KW - Pattern Recognition, Automated

KW - Polysomnography

KW - Probability

KW - REM Sleep Behavior Disorder

KW - Sensitivity and Specificity

KW - Signal Processing, Computer-Assisted

KW - Sleep

U2 - 10.1016/j.jneumeth.2014.07.002

DO - 10.1016/j.jneumeth.2014.07.002

M3 - Journal article

C2 - 25016288

SN - 0165-0270

VL - 235

SP - 130

EP - 137

JO - Journal of Neuroscience Methods

JF - Journal of Neuroscience Methods

ER -

Automatic sleep classification using a data-driven topic model reveals latent sleep states

Abstract

Keywords

Access to Document

Fingerprint

Cite this