James Seymour Haile

2019

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

Frantz, L. A. F., Haile, J., Lin, A. T., Scheu, A., Geoerg, C., Benecke, N., Alexander, M., Linderholm, A., Mullin, V. E., Daly, K. G., Battista, V. M., Price, M., Gron, K. J., Alexandri, P., Arbogast, R.-M., Arbuckle, B., Balasescu, A., Barnett, R., Bartosiewicz, L. & Baryshnikov, G. & 80 others, Bonsall, C., Boric, D., Boroneant, A., Bulatovic, J., Cakirlar, C., Carretero, J.-M., Chapman, J., Church, M., Crooijmans, R., De Cupere, B., Detry, C., Dimitrijevic, V., Dumitrascu, V., du Plessis, L., Edwards, C. J., Erek, C. M., Erim-Ozdogan, A., Ervynck, A., Fulgione, D., Gligor, M., Gotherstrom, A., Gourichon, L., Groenen, M. A. M., Helmer, D., Hongo, H., Horwitz, L. K., Irving-Pease, E. K., Lebrasseur, O., Lesur, J., Malone, C., Manaseryan, N., Marciniak, A., Martlew, H., Mashkour, M., Matthews, R., Matuzeviciute, G. M., Maziar, S., Meijaard, E., McGovern, T., Megens, H.-J., Miller, R., Mohaseb, A. F., Orschiedt, J., Orton, D., Papathanasiou, A., Pearson, M. P., Pinhasi, R., Radmanovic, D., Ricaut, F.-X., Richards, M., Sabin, R., Sarti, L., Schier, W., Sheikhi, S., Stephan, E., Stewart, J. R., Stoddart, S., Tagliacozzo, A., Tasic, N., Trantalidou, K., Tresset, A., Valdiosera, C., van den Hurk, Y., Van Poucke, S., Vigne, J.-D., Yanevich, A., Zeeb-Lanz, A., Triantafyllidis, A., Gilbert, M. T. P., Schibler, J., Rowley-Conwy, P., Zeder, M., Peters, J., Cucchi, T., Bradley, D. G., Dobney, K., Burger, J., Evin, A., Girdland-Flink, L. & Larson, G., 27 Aug 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 35, p. 17231-17238

Research output: Contribution to journal › Journal article › Research › peer-review

26 Citations (Scopus)

10 Downloads (Pure)

Hybridization between two high Arctic cetaceans confirmed by genomic analysis

Skovrind, M., Castruita, J. A. S., Haile, J., Treadaway, E. C., Gopalakrishnan, S., Westbury, M. V., Heide-Jorgensen, M. P., Szpak, P. & Lorenzen, E. D., 1 Dec 2019, In: Scientific Reports. 9, 10 p., 7729.

Research output: Contribution to journal › Journal article › Research › peer-review

9 Citations (Scopus)

54 Downloads (Pure)

Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa

Knapp, M., Thomas, J. E., Haile, J., Prost, S., Ho, S. Y. W., Dussex, N., Cameron-Christie, S., Kardailsky, O., Barnett, R., Bunce, M., Gilbert, M. T. P. & Scofield, R. P., May 2019, In: Molecular Phylogenetics and Evolution. 134, p. 122-128

Research output: Contribution to journal › Journal article › Research › peer-review

4 Citations (Scopus)

2018

Giant deer (Megaloceros giganteus) diet from Mid-Weichselian deposits under the present North Sea inferred from molar-embedded botanical remains: GIANT DEER DIET FROM MID-WEICHSELIAN DEPOSITS

Van Geel, B., Sevink, J., Mol, D., Langeveld, B. W., Van Der Ham, R. W. J. M., Van Der Kraan, C. J. M., Van Der Plicht, J., Haile, J. S., Rey-iglesia, A. & Lorenzen, E. D., 1 Nov 2018, In: Journal of Quaternary Science. 33, 8, p. 924-933

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

Metabarcoding of modern soil DNA gives a highly local vegetation signal in Svalbard tundra

Edwards, M. E., Alsos, I. G., Yoccoz, N., Coissac, E., Goslar, T., Gielly, L., Haile, J., Langdon, C. T., Tribsch, A., Binney, H. A., Von Stedingk, H. & Taberlet, P., 1 Jan 2018, In: The Holocene. 28, 12, p. 2006-2016

Research output: Contribution to journal › Journal article › Research › peer-review

13 Citations (Scopus)

Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events

Frantz, L. A. F., Rudzinski, A., Nugraha, A. M. S., Evin, A., Burton, J., Hulme-Beaman, A., Linderholm, A., Barnett, R., Vega, R., Irving-Pease, E. K., Haile, J. S., Allen, R., Leus, K., Shephard, J., Hillyer, M., Gillemot, S., van den Hurk, J., Ogle, S., Atofanei, C. & Thomas, M. G. & 22 others, Johansson, F., Mustari, A. H., Williams, J., Mohamad, K., Damayanti, C. S., Wiryadi, I. D., Obbles, D., Mona, S., Day, H., Yasin, M., Meker, S., McGuire, J. A., Evans, B. J., von Rintelen, T., Ho, S. Y. W., Searle, J. B., Kitchener, A. C., Macdonald, A. A., Shaw, D. J., Hall, R., Galbusera, P. & Larson, G., 11 Apr 2018, In: Proceedings of the Royal Society B: Biological Sciences. 285, 1876, 8 p., 20172566.

Research output: Contribution to journal › Journal article › Research › peer-review

6 Citations (Scopus)

69 Downloads (Pure)

The evolutionary history of dogs in the Americas

Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K. & Grimes, V. & 30 others, Guiry, E., Hansen, A. J., Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y.-M., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J.-M., Pavlova, E. Y., Sciulli, P., Sinding, M.-H. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, E., Pitulko, V. V., Barnes, I., Gilbert, M. T. P., Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., 6 Jul 2018, In: Science. 361, 6397, p. 81-85 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

46 Citations (Scopus)

2017

An ‛aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks

Thomas, J. E., Carvalho, G. R., Haile, J. S., Martin, M. D., Samaniego Castruita, J. A., Niemann, J., Sinding, M. H. S., Sandoval Velasco, M., Rawlence, N. J., Fuller, E., Fjeldså, J., Hofreiter, M., Stewart, J. R., Gilbert, T. & Knapp, M., 15 Jun 2017, In: Genes. 8, 6, 12 p., 164.

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

388 Downloads (Pure)

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

Sanchez Barreiro, F., Garrett Vieira, F. J., Martin, M. D., Haile, J. S., Gilbert, T. & Wales, N., 1 Mar 2017, In: Molecular Ecology Resources. 17, 2, p. 209-220 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

12 Citations (Scopus)

2016

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

Soares, A. E. R., Novak, B. J., Haile, J. S., Heupink, T. H., Fjeldså, J., Gilbert, T., Poinar, H., Church, G. M. & Shapiro, B., 26 Oct 2016, In: BMC Evolutionary Biology. 16, 9 p., 230.

Research output: Contribution to journal › Journal article › Research › peer-review

20 Citations (Scopus)

71 Downloads (Pure)

2015

Ancient and modern environmental DNA

Pedersen, M. W., Overballe-Petersen, S., Ermini, L., Der Sarkissian, C., Haile, J. S., Hellström, A. M., Spens, J., Thomsen, P. F., Bohmann, K., Cappellini, E., Schnell, I. B., Wales, N., Carøe, C., Campos, P., Schmidt, A. M. Z., Gilbert, M. T. P., Hansen, A. J., Orlando, L. A. A. & Willerslev, E., 19 Jan 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 11 p., 20130383.

Research output: Contribution to journal › Review › peer-review

148 Citations (Scopus)

Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes

Epp, L. S., Gussarova, G., Boessenkool, S., Olsen, J., Haile, J. S., Schrøder-Nielsen, A., Ludikova, A., Hassel, K., Stenøien, H. K., Funder, S. V., Willerslev, E., Kjær, K. H. & Brochmann, C., 2015, In: Quaternary Science Reviews. 117, p. 152-163 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

43 Citations (Scopus)

Palaeoenvironmental interpretation of yedoma silt (ice complex) deposition as cold-climate loess, Duvanny Yar, Northeast Siberia

Murton, J. B., Goslar, T., Edwards, M. E., Bateman, M. D., Danilov, P. P., Savvinov, G. N., Gubin, S. V., Ghaleb, B., Haile, J. S., Kanevskiy, M., Lozhkin, A. V., Lupachev, A. V., Murton, D. K., Shur, Y., Tikhonov, A., Vasil'chuk, A. C., Vasil'chuk, Y. K. & Wolfe, S. A., 1 Jul 2015, In: Permafrost and Periglacial Processes. 26, 3, p. 208-288 81 p.

Research output: Contribution to journal › Journal article › Research › peer-review

60 Citations (Scopus)

2014

Fifty thousand years of Arctic vegetation and megafaunal diet

Willerslev, E., Davison, J., Moora, M., Zobel, M., Coissac, E., Edwards, M. E., Lorenzen, E., Vestergård, M., Gussarova, G., Haile, J. S., Craine, J., Gielly, L., Boessenkool, S., Epp, L. S., Pearman, P. B., Cheddadi, R., Murray, D., Bråthen, K. A., Yoccoz, N. & Binney, H. & 30 others, Cruaud, C., Wincker, P., Goslar, T., Alsos, I. G., Bellemain, E., Brysting, A. K., Elven, R., Sønstebø, J. H., Murton, J., Sher, A., Rasmussen, M., Rønn, R., Mourier, T., Cooper, A., Austin, J., Möller, P., Froese, D., Zazula, G., Pompanon, F., Rioux, D., Niderkorn, V., Tikhonov, A., Savvinov, G., Roberts, R. G., MacPhee, R. D. E., Gilbert, M. T. P., Kjær, K. H., Orlando, L. A. A., Brochmann, C. & Taberlet, P., 2014, In: Nature. 506, 7486, p. 47-51 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

304 Citations (Scopus)

2013

Molecular- and pollen-based vegetation analysis in lake sediments from central Scandinavia

Parducci, L., Matetovici, I., Fontana, S. L., Bennett, K. D., Suyama, Y., Haile, J. S., Kjær, K. H., Larsen, N. K., Drouzas, A. D. & Willerslev, E., 1 Jul 2013, In: Molecular Ecology. 22, 13, p. 3511-3524 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

59 Citations (Scopus)

2012

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

Jørgensen, T., Haile, J. S., Möller, P., Andreev, A., Boessenkool, S., Rasmussen, M., Kienast, F., Coissac, E., Taberlet, P., Brochmann, C., Bigelow, N. H., Andersen, K., Orlando, L. A. A., Gilbert, T. & Willerslev, E., Apr 2012, In: Molecular Ecology. 21, 8, p. 1989-2003 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

91 Citations (Scopus)

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA

Boessenkool, S., Epp, L. S., Haile, J. S., Bellemain, E., Edwards, M., Coissac, E., Willerslev, E. & Brochmann, C., Apr 2012, In: Molecular Ecology. 21, 8, p. 1806-1815 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

68 Citations (Scopus)

DNA from soil mirrors plant taxonomic and growth form diversity

Yoccoz, N. G., Bråthen, K. A., Gielly, L., Haile, J. S., Edwards, M. E., Goslar, T., von Stedingk, H., Brysting, A. K., Coissac, E., Pompanon, F., Sønstebo, J. H., Miquel, C., Valentini, A., de Bello, F., Chave, J., Thuiller, W., Wincker, P., Cruaud, C., Gavory, F. & Rasmussen, M. & 5 others, Gilbert, T., Orlando, L. A. A., Brochmann, C., Willerslev, E. & Taberlet, P., 1 Aug 2012, In: Molecular Ecology. 21, 15, p. 3647-3655 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

156 Citations (Scopus)

Glacial survival of boreal trees in northern Scandinavia

Parducci, L., Jørgensen, T., Tollefsrud, M. M., Elverland, E., Alm, T., Fontana, S. L., Bennett, K. D., Haile, J. S., Matetovici, I., Suyama, Y., Edwards, M. E., Andersen, K., Rasmussen, M., Boessenkool, S., Coissac, E., Brochmann, C., Taberlet, P., Houmark-Nielsen, M., Larsen, N. K. & Orlando, L. A. A. & 4 others, Gilbert, T., Kjær, K. H., Alsos, I. G. & Willerslev, E., 2 Mar 2012, In: Science. 335, 6072, p. 1083-1086 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

220 Citations (Scopus)

High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

Murray, D. C., Pearson, S. G., Fullagar, R., Chase, B. M., Houston, J., Atchison, J., White, N. E., Bellgard, M. I., Clarke, E., Macphail, M., Gilbert, T., Haile, J. S. & Bunce, M., 14 Dec 2012, In: Quaternary Science Reviews. 58, p. 135-145 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

32 Citations (Scopus)

Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding

Jørgensen, T., Kjær, K. H., Haile, J. S., Rasmussen, M., Boessenkool, S., Andersen, K., Coissac, E., Taberlet, P., Brochmann, C., Orlando, L. A. A., Gilbert, T. & Willerslev, E., Apr 2012, In: Molecular Ecology. 21, 8, p. 1980-1988 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

53 Citations (Scopus)

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

Andersen, K., Bird, K. L., Rasmussen, M., Haile, J. S., Breuning-Madsen, H., Kjær, K. H., Orlando, L. A. A., Gilbert, T. & Willerslev, E., Apr 2012, In: Molecular Ecology. 21, 8, p. 1966-1979 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

160 Citations (Scopus)

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

Epp, L. S., Boessenkool, S., Bellemain, E. P., Haile, J. S., Esposito, A., Riaz, T., Erséus, C., Gusarov, V. I., Edwards, M. E., Johnsen, A., Stenøien, H. K., Hassel, K., Kauserud, H., Yoccoz, N. G., Bråthen, K. A., Willerslev, E., Taberlet, P., Coissac, E. & Brochmann, C., Apr 2012, In: Molecular Ecology. 21, 8, p. 1821-1833 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

143 Citations (Scopus)

2011

Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially-frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies

Arnold, L. J., Roberts, R. G., MacPhee, R. D. E., Haile, J. S., Brock, F., Möller, P., Froese, D. G., Tikhonov, A. N., Chivas, A. R., Gilbert, T. & Willerslev, E., Jul 2011, In: Boreas. 40, 3, p. 417-445 29 p.

Research output: Contribution to journal › Journal article › Research › peer-review

27 Citations (Scopus)

Possible Late Pleistocene volcanic activity on Nightingale Island, South Atlantic Ocean, based on geoelectrical resistivity measurements, sediment corings and ¹⁴C dating

Bjørk, A. A., Björck, S., Cronholm, A., Haile, J. S., Ljung, K. & Porter, C., Sept 2011, In: GFF. 133, 3-4, p. 141-147 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

3 Citations (Scopus)

Species-specific responses of Late Quaternary megafauna to climate and humans

Lorenzen, E., Nogues, D. B., Orlando, L. A. A., Weinstock Arenovitz, J., Binladen, J. K. M. A., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. & Froese, D. & 35 others, Zazula, G., Stafford jr., T., Aaris-Sørensen, K., Batra, P., Haywood, A. M., Singarayer, J. S., Valdes, P. J., Boeskorov, G., Burns, J. A., Davydov, S. P., Haile, J. S., Jenkins, D. L., Kosintsev, P., Kuznetsova, T., Lai, X., Martin, L. D., McDonald, H. G., Mol, D., Meldgaard, M., Munch, K., Stephan, E., Sablin, M., Sommer, R. S., Sipko, T., Scott, E., Suchard, M. A., Tikhonov, A., Willerslev, R., Wayne, R. K., Cooper, A., Hofreiter, M., Sher, A., Shapiro, B., Rahbek, C. & Willerslev, E., 17 Nov 2011, In: Nature. 479, 7373, p. 359-364 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

427 Citations (Scopus)

The late Pleistocene environment of the Eastern West Beringia based on the principal section at the Main River, Chukotka

Kuzmina, S. A., Sher, A. V., Edwards, M. E., Haile, J. S., Yan, E. V., Kotov, A. V. & Willerslev, E., Aug 2011, In: Quaternary Science Reviews. 30, 17–18, p. 2091-2106 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

25 Citations (Scopus)

2010

Fossil avian eggshell preserves ancient DNA

Oskam, C. L., Haile, J. S., McLay, E., Rigby, P., Allentoft, M. E., Olsen, M. E., Bengtsson, C., Miller, G. H., Schwenninger, J.-L., Jacomb, C., Walter, R., Baynes, A., Dortch, J., Parker-Pearson, M., Gilbert, T., Holdaway, R. N., Willerslev, E. & Bunce, M., 7 Jul 2010, In: Royal Society of London. Proceedings B. Biological Sciences. 277, 1690, p. 1991-2000 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

88 Citations (Scopus)

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

Sønstebø, J. H., Gielly, L., Brysting, A. K., Elven, R., Edwards, M., Haile, J. S., Willerslev, E., Coissac, E., Rioux, D., Sannier, J., Taberlet, P. & Brochmann, C., Nov 2010, In: Molecular Ecology Resources. 10, 6, p. 1009-1018 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

120 Citations (Scopus)

2009

Ancient DNA reveals late survival of mammoth and horse in interior Alaska

Haile, J., Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, R., Brook, B. W., Robinson, S., Demuro, M., Gilbert, M. T. P., Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, E., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

158 Citations (Scopus)

Mid-Holocene vertebrate bone Concentration-Lagerstätte on oceanic island Mauritius provides a window into the ecosystem of the dodo (Raphus cucullatus)

Rijsdijk, K. F., Hume, J. P., Bunnik, F., Florens, F. B. V., Baider, C., Shapiro, B., van der Plicht, J., Janoo, A., Griffiths, O., van den Hoek Ostende, L. W., Cremer, H., Vernimmen, T., De Louw, P. G. B., Bholah, A., Saumtally, S., Porch, N., Haile, J., Buckley, M., Collins, M. & Gittenberger, E., 1 Jan 2009, In: Quaternary Science Reviews. 28, 1-2, p. 14-24 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

34 Citations (Scopus)

Non-destructive sampling of ancient insect DNA

Thomsen, P. F., Elias, S., Gilbert, T., Haile, J., Munch, K., Kuzmina, S., Froese, D. G., Sher, A., Holdaway, R. N. & Willerslev, E., 2009, In: PLoS ONE. 4, 4, p. e5048

Research output: Contribution to journal › Journal article › Research › peer-review

76 Citations (Scopus)

2639 Downloads (Pure)

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography

Bunce, M., Worthy, T. H., Phillips, M. J., Holdaway, R. N., Willerslev, E., Haile, J., Shapiro, B., Scofield, R. P., Drummond, A., Kamp, P. J. J. & Cooper, A., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, p. 20646-20651 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

127 Citations (Scopus)

2006

Assessing the fidelity of ancient DNA sequences amplified from nuclear genes

Binladen, J., Wiuf, C. H., Gilbert, M. T. P., Bunce, M., Barnett, R., Larson, G., Greenwood, A. D., Haile, J., Ho, S. Y. W., Hansen, A. J. & Willerslev, E., 2006, In: Genetics. 172, 2, p. 733-41

Research output: Contribution to journal › Journal article › Research › peer-review

86 Citations (Scopus)

James Seymour Haile

Research output

Search results