Biocomplexity

Research output

Research output per year 1972 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2020

• 709 Journal article
• 39 Ph.D. thesis
• 27 Conference article
• 19 Other contribution
• 70 More
  • 17 Article in proceedings
  • 16 Book chapter
  • 13 Review
  • 5 Book
  • 5 Comment/debate
  • 4 Conference abstract for conference
  • 2 Conference abstract in journal
  • 1 Report
  • 1 Conference abstract in proceedings
  • 1 Encyclopedia chapter
  • 1 Poster
  • 1 Contribution to newspaper - Newspaper article
  • 1 Editorial
  • 1 Letter
  • 1 Patent

Research output per year

Research output per year

Search results

• 2009

  The influence of vesicle size and composition on alpha-synuclein structure and stability

  Kjær, L., Giehm, L., Otzen, D. & Heimburg, T. R., 2009, In: Biophysical Journal. 96, 7, p. 2857-2870 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  60 Citations (Scopus)

• Themed issue: membrane biophysics

  Heimburg, T. R., 2009, In: Soft Matter. 5, 17, p. 3145-3147 2 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  5 Citations (Scopus)

• Thermodynamics and roughening of solid-solid interfaces

  Angheluta, L., Jettestuen, E. & Mathiesen, J., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 3, Part 1, p. 031601

  Research output: Contribution to journal › Journal article › Research › peer-review

  16 Citations (Scopus)

• Thermodynamics of stressed solids: Slow deformation and roughening of material interfaces

  Angheluta, L. & Mathiesen, J., 2009, In: European Physical Journal. Special Topics. 178, 1, p. 123-132 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Chemical Potential 100%
  • Chemical potential 88%
  • Thermodynamics 76%
  • Mass Transfer 74%
  • thermodynamics 60%
  4 Citations (Scopus)

• The temperature dependence of lipid membrane permeability, its quantized nature, and the influence of anesthetics

  Blicher, A., Wodzinska, K., Fidorra, M., Winterhalter, M. & Heimburg, T. R., 2009, In: Biophysical Journal. 96, 11, p. 4581-4591 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  127 Citations (Scopus)

• The thermodynamics of lipid ion channel formation in the absence and presence of anesthetics. BLM experiments and simulations

  Wodzinska, K., Blicher, A. & Heimburg, T. R., 2009, In: Soft Matter. 5, 17, p. 3319-3330 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  27 Citations (Scopus)

• Toolbox model of evolution of prokaryotic metabolic networks and their regulation

  Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, K., 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.

  Research output: Contribution to journal › Conference article › Research › peer-review

  79 Citations (Scopus)

• Towards a thermodynamic theory of nerve pulse propagation

  Andersen, S. SSL., Jackson, A. D. & Heimburg, T. R., 2009, In: Progress in Neurobiology. 88, 2, p. 104-113 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  82 Citations (Scopus)

• Tracking cell-nanoparticle interactions

  Selhuber-Unkel, C. J. M., 1 Dec 2009, In: Journal of Biomedical Nanotechnology. 5, 6, Sp.Iss. Sl., p. 634-640 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  9 Citations (Scopus)

• Variety in intracellular diffusion during the cell cycle

  Selhuber-Unkel, C., Yde, P., Berg-Sørensen, K. & Oddershede, L. B., 2009, In: Physical Biology. 6, 2, p. 025015

  Research output: Contribution to journal › Journal article › Research › peer-review

  41 Citations (Scopus)

• Vesicles in electric fields: some novel aspects of membrane behavior

  Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  109 Citations (Scopus)

• Why do phage play dice?

  Avlund, M., Dodd, I. B., Semsey, S., Sneppen, K. & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  33 Citations (Scopus)
• 2008

  Amplitude equation and long-rang interactions in underwater sand ripples in one dimension

  Schnipper, T., Mertens, K., Ellegaard, C. S. & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.

  Research output: Contribution to journal › Journal article › Research › peer-review

  7 Citations (Scopus)

• Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations

  Imafuku, Y., Mitarai, N., Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493

  Research output: Contribution to journal › Journal article › Research › peer-review

  1 Citation (Scopus)

• A quantitative analysis of contractility in active cytoskeletal protein networks

  Bendix, P. M., Koenderink, G. K., Cuvelier, D., Dogic, Z., Koelemann, B. N., Brieher, W. M., Field, C. M., Mahadevan, L. & Weitz, D. A., 15 Apr 2008, In: Biophysical Journal. 94, 8, p. 3126-3136 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  205 Citations (Scopus)

• A quantitative analysis of indicators of scientific performance

  Lehmann, S., Jackson, A. D. & Lautrup, B. E., 2008, In: Scientometrics. 76, 2, p. 369-390 22 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  72 Citations (Scopus)

• Brownian Warps for Non-Rigid Registration

  Nielsen, M., Johansen, P., Jackson, A. D., Lautrup, B. E. & Hauberg, S., 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 221-231 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  6 Citations (Scopus)

• Development of radiotracers for Vps10p domain (neurotensin-3) receptors

  Bender, D., Horvath, G., Jansen, P., Olsen, A. K. & Gjedde, A., 2008, In: NeuroImage. 41, Suppl. 2, p. T89-T89

  Research output: Contribution to journal › Journal article › Research › peer-review

• Dimensions, maximal growth sites, and optimization in the dielectric breakdown model

  Mathiesen, J., Jensen, M. H. & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203

  Research output: Contribution to journal › Journal article › Research › peer-review

  8 Citations (Scopus)

• Dynamical analysis on gene activity in the presence of repressors and an interfering promoter

  Nakanishi, H., Mitarai, N. & Sneppen, K., 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240

  Research output: Contribution to journal › Journal article › Research › peer-review

  11 Citations (Scopus)

• Dynamical genetic regulation

  Jensen, M. H., Krishna, S., Sneppen, K. & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).

  Research output: Book/Report › Book › Research › peer-review

• Efficient optical trapping and visualization of silver nanoparticles

  Bosanac, L., Aabo, T., Bendix, P. M. & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486-1491 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  187 Citations (Scopus)

• Efficient optical trapping and visualization of silver nano-particles

  Bosanac, L., Aabo, T., Bendix, P. M. & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486–1491 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Elasticity with arbitrarily shaped inhomogeneity

  Mathiesen, J., Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Inhomogeneity 100%
  • Elasticity 78%
  • inhomogeneity 72%
  • elastic properties 65%
  • Conformal Map 44%
  5 Citations (Scopus)

• Gene duplication models for directed networks with limits on growth

  Enemark, J. & Sneppen, K., 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007

  Research output: Contribution to journal › Journal article › Research › peer-review

  12 Citations (Scopus)

• Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1

  Pedersen, M., Lo Leggio, L., Grossmann, J. G., Larsen, S. Y. & Hammer, K., 2008, In: Journal of Molecular Biology. 373, p. 983-996

  Research output: Contribution to journal › Journal article › Research › peer-review

  15 Citations (Scopus)

• Komolgorov scaling from random force fields

  Jensen, M. H., Sneppen, K. & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  2 Citations (Scopus)

• Lipid membrane domain formation and alamethicin aggregation studied by calorimetry, sound velocity measurements, and atomic force microscopy

  Oliynyk, V., Jäger, M., Heimburg, T. R., Buckin, V. & Kaatze, U., 2008, In: Biophysical Chemistry. 134, 3, p. 168-177 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  16 Citations (Scopus)

• Missing levels in acoustic resonators

  Noguetira, T. N., Sartorelli, J. C., Pato, M. P. & Ellegaard, C. S., 1 Nov 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 5, part 2, 055201.

  Research output: Contribution to journal › Journal article › Research › peer-review

  4 Citations (Scopus)

• Mode locking of a driven Bose-Einstein condensate

  Nicolin, A., Carretero-González, R. & Jensen, M. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 036208

  Research output: Contribution to journal › Journal article › Research › peer-review

  13 Citations (Scopus)

• Non-harmonic potential of a single beam optical trap

  Richardson, A. C., S. Reihani, S. N. & Oddershede, L. B., 2008, In: Optics Express. 16, 20, p. 15709-15717 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  37 Citations (Scopus)

• One hub-one process: a tool based view on regulatory network topology

  Axelsen, J. B., Bernhardsson, S. & Sneppen, K., 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

  Research output: Contribution to journal › Journal article › Research › peer-review

  4 Citations (Scopus)

• Optical tweezers cause physiological damage to Escherichia coli and Listeria bacteria

  Rasmussen, M. B., Oddershede, L. B. & Siegumfeldt, H., 2008, In: Applied and Environmental Microbiology. 74, 8, p. 2441-2446

  Research output: Contribution to journal › Journal article › Research › peer-review

  125 Citations (Scopus)

• Optical tweezers techniques

  Oddershede, L. B., 2008, Handbook of Molecular Biophysics: Methods and Applications. Bohr, H. G. (ed.). 1. ed. ed. Berlin: Wiley-VCH, Vol. Chapter 6. p. Chapter 6

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

• Oscillation patterns in negative feedback loops

  Pigolotti, S., Krishna, S. & Jensen, M. H., 2008, In: Proceedings of the National Academy of Science of the United States of America. 104, 16, p. 6533-6537

  Research output: Contribution to journal › Journal article › Research › peer-review

  95 Citations (Scopus)

• Oscillations and temporal signalling in cells

  Tiana, G., Krishna, S., Pigolotti, S., Jensen, M. H. & Sneppen, K., 2008, In: Physical Biology. 4, 2, p. R1-R17

  Research output: Contribution to journal › Journal article › Research › peer-review

  100 Citations (Scopus)

• Quantitative force calibration in viscoelastic media and living cells: 32nd Congress of the Federation of European Biochemical Societies. July 07-12 Vienna, Austria

  Berg-Sørensen, K., Fischer, M., Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2008, In: FEBS Journal. 274, Suppl. 1, p. 299-299

  Research output: Contribution to journal › Journal article › Research › peer-review

• Quantitative optical trapping of single gold nanorods

  Selhuber-Unkel, C., Zins, I., Schubert, O., Soennichsen, C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 9, p. 2998-3003

  Research output: Contribution to journal › Journal article › Research › peer-review

  157 Citations (Scopus)

• Rationalizing translation attenuation in the network architecture of the unfolded protein response

  Trusina, A., Papa, F. R. & Tang, C., 23 Dec 2008, In: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, p. 20280-20285

  Research output: Contribution to journal › Journal article › Research › peer-review

  37 Citations (Scopus)

• Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions

  Merksamer, P., Trusina, A. & Papa, F., 20 Nov 2008, In: Cell. 135, 5, p. 933-947

  Research output: Contribution to journal › Journal article › Research › peer-review

  202 Citations (Scopus)

• Resonant energy transfer in Bose-Einstien condensates

  Nicolin, A., Jensen, M. H., Thomsen, J. W. & Carretero-Gonxález, R., 2008, In: Physica D : Non-linear Phenomena. 237, 19, p. 2476-2481

  Research output: Contribution to journal › Journal article › Research › peer-review

  8 Citations (Scopus)

• Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

  Mitarai, N., Sneppen, K. & Pedersen, S., 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Codon Usage 100%
  • Ribosomes 75%
  • Messenger RNA 41%
  • Stochastic Processes 18%
  • Protein Biosynthesis 13%
  101 Citations (Scopus)

• Signalling and Feedback in Biological Networks

  Krishna, S., Jensen, M. H. & Sneppen, K., 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

• Single-file dynamics with different diffusion constants

  Ambjornsson, T., Silbey, R. J., Lizana, G. L. & Lomholt, M. A., 2008, In: Journal of Chemical Physics. 129, 18, p. 185106

  Research output: Contribution to journal › Journal article › Research › peer-review

  21 Citations (Scopus)

• Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence

  Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  17 Citations (Scopus)

• Stability of a sonoluminescing nitrogen bubble in chilled water

  Holzfuss, J. & Levinsen, M. T., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 4, p. 046304 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  10 Citations (Scopus)

• The cost and capacity of signaling in the Escherichia coli proetin reaction network

  Axelsen, J. B., Krishna, S. & Sneppen, K., 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

  Research output: Contribution to journal › Journal article › Research › peer-review

  5 Citations (Scopus)

• The generation of promoter-mediated transcriptional noise in bacteria

  Mitarai, N., Dodd, I. B., Crooks, M. T. & Sneppen, K., 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

  Research output: Contribution to journal › Journal article › Research › peer-review

  37 Citations (Scopus)

• Thermodynamics of the nervous impulse

  Jackson, A. D. & Heimburg, T. R., 2008, Structure and dynamics of membranous interfaces. Nag, K. (ed.). New York: Wiley, p. 317-340 24 p.

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

• The Role of MOR and the CI operator sites on the genetic switch temperate bacteriophage TP901-1

  Pedersen, M. & Hammer, K., 9 Dec 2008, In: Journal of Molecular Biology. 384, 3, p. 577-589

  Research output: Contribution to journal › Journal article › Research › peer-review