Geometric morphometrics and paleoproteomics in tandem enlighten the paleodiversity of Pongo - Data for Phylogenies

This folder contains the data used for the creation of the phylogenetic trees for the manuscript 'Geometric morphometrics and paleoproteomics in tandem enlighten the paleodiversity of Pongo'. Ancient_Sequences.fa is a fasta file containing all palaeoproteomic sequences reconstructed in the context of the above study. (15 fosil pongo samples) 'Raw_Reference_Dataset' is a folder containing 9 fasta files. Each fasta contains the reference sequences of multiple samples (6 H.sapiens,27 Pongo, 30 Gorilla, 38 Pan, 2 Macaca, 1 Nomascus, 1 Microcebus, 1 Papio ) for one protein. 'Alignments' is a folder containing 9 fasta files with the name of a protein. Each fasta file contains the aligned sequences of the reference dataset and the ancient samples for that protein. Additionally, the fasta file 'CONCATENATED.fa' contains all proteins concatenated, aligned and I/L fixed.